Wall clock time and date at job start Tue Mar 31 2020 17:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99963 * 2 1 4 4 C 1.53006 * 109.47265 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46997 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46728 * 180.02562 * 5 4 3 7 7 C 1.35615 * 117.00102 * 180.02562 * 6 5 4 8 8 C 1.39294 * 119.97603 * 179.97438 * 7 6 5 9 9 N 1.31775 * 120.03486 * 179.97438 * 8 7 6 10 10 C 1.33030 * 119.98346 * 0.02562 * 9 8 7 11 11 C 1.48396 * 120.02809 * 179.97438 * 10 9 8 12 12 N 1.30767 * 126.41583 * 179.68459 * 11 10 9 13 13 O 1.21287 * 110.09485 * 179.84330 * 12 11 10 14 14 C 1.33668 * 110.03113 * 0.42723 * 13 12 11 15 15 C 1.50704 * 126.44255 * 179.77357 * 14 13 12 16 16 C 1.52996 * 109.46820 * 269.96024 * 15 14 13 17 17 C 1.50709 * 109.47204 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99699 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00208 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00032 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99936 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46914 * 90.00206 * 21 19 17 23 23 H 1.48497 * 109.46962 * 209.99794 * 21 19 17 24 24 H 1.48500 * 109.47230 * 330.00203 * 21 19 17 25 25 N 1.30970 * 107.12477 * 359.73629 * 14 13 12 26 26 C 1.39258 * 119.94405 * 359.97438 * 10 9 8 27 27 N 1.32083 * 119.96613 * 359.72274 * 26 10 9 28 28 H 1.08998 * 109.47485 * 299.99796 * 1 2 3 29 29 H 1.09007 * 109.47297 * 60.00209 * 1 2 3 30 30 H 1.09003 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47075 * 60.00062 * 3 2 1 32 32 H 1.08996 * 109.47405 * 300.00238 * 3 2 1 33 33 H 1.09000 * 109.46866 * 60.00127 * 4 3 2 34 34 H 1.09001 * 109.46611 * 300.00244 * 4 3 2 35 35 H 1.09000 * 109.47486 * 60.00167 * 5 4 3 36 36 H 1.09001 * 109.47362 * 299.99445 * 5 4 3 37 37 H 1.07994 * 119.98279 * 359.97101 * 8 7 6 38 38 H 1.09005 * 109.46848 * 29.95359 * 15 14 13 39 39 H 1.08991 * 109.47384 * 149.95818 * 15 14 13 40 40 H 1.08997 * 109.47125 * 299.99343 * 16 15 14 41 41 H 1.08996 * 109.47750 * 59.99584 * 16 15 14 42 42 H 0.97005 * 119.99714 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.01149 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 8 5.5823 2.4695 0.0013 7 6 6.2915 3.6255 0.0024 8 6 7.6839 3.5877 0.0030 9 7 8.3742 4.7102 0.0035 10 6 7.7409 5.8801 0.0040 11 6 8.5173 7.1447 0.0052 12 7 8.0266 8.3569 0.0000 13 8 8.9260 9.1705 0.0059 14 6 10.1081 8.5464 0.0064 15 6 11.4657 9.2005 0.0080 16 6 11.9267 9.4222 -1.4339 17 6 13.2842 10.0769 -1.4323 18 1 13.7693 10.3118 -0.4964 19 6 13.9067 10.3759 -2.6256 20 7 15.0915 10.9468 -2.6241 21 14 13.0679 9.9690 -4.2443 22 1 12.2370 11.1220 -4.6748 23 1 14.0965 9.6870 -5.2776 24 1 12.2035 8.7746 -4.0674 25 7 9.8647 7.2595 0.0059 26 6 6.3488 5.9169 0.0034 27 7 5.6590 4.7906 -0.0032 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 3.8357 3.1231 0.8913 36 1 3.8365 3.1235 -0.8887 37 1 8.1980 2.6380 0.0031 38 1 11.4061 10.1600 0.5219 39 1 12.1787 8.5564 0.5225 40 1 11.9864 8.4628 -1.9478 41 1 11.2137 10.0663 -1.9485 42 1 15.5293 11.1575 -3.4637 43 1 5.8336 6.8661 0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361270053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:00 Heat of formation + Delta-G solvation = 28.324345 kcal Electronic energy + Delta-G solvation = -26358.886695 eV Core-core repulsion = 22215.546765 eV Total energy + Delta-G solvation = -4143.339931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.37395 -41.69950 -39.25199 -38.40431 -35.88959 -34.82417 -34.44681 -33.70832 -32.72520 -31.28343 -30.26361 -27.89748 -26.42984 -26.14105 -25.18496 -24.79863 -23.23319 -22.15525 -22.03265 -20.68151 -19.07952 -18.37979 -17.96390 -17.60172 -17.29545 -16.94382 -16.77041 -16.38547 -16.34295 -15.58839 -15.09217 -14.99814 -14.64103 -14.43576 -14.09304 -13.88086 -13.84326 -13.33007 -12.79163 -12.54635 -12.52530 -12.42184 -12.31875 -11.97548 -11.94470 -11.79281 -11.63475 -11.45583 -11.22548 -11.10909 -10.90228 -10.69354 -10.28566 -10.23567 -9.90955 -9.73502 -9.70502 -9.37993 -8.88124 -8.63289 -6.13931 -4.14646 0.09692 0.60992 1.42372 2.13812 2.39778 2.99385 3.13110 3.24392 3.26715 3.35065 3.37161 3.38962 3.56175 3.74139 4.08690 4.26841 4.37844 4.38409 4.40979 4.53561 4.70060 4.77068 4.78209 4.82347 4.88296 4.92493 5.06633 5.12030 5.12464 5.20105 5.37639 5.42199 5.57596 5.75962 5.85461 5.99974 6.14475 6.41321 6.48460 6.54357 6.73304 7.00170 7.13795 7.26743 7.60504 8.25995 8.37596 8.88125 9.46753 10.98622 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.026703 B = 0.001643 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.313483 B =17039.433285 C =17375.434990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.066 3.934 4 C -0.121 4.121 5 C 0.070 3.930 6 O -0.291 6.291 7 C 0.285 3.715 8 C 0.056 3.944 9 N -0.362 5.362 10 C 0.114 3.886 11 C 0.213 3.787 12 N -0.379 5.379 13 O 0.082 5.918 14 C 0.214 3.786 15 C -0.020 4.020 16 C -0.008 4.008 17 C -0.526 4.526 18 H 0.079 0.921 19 C 0.074 3.926 20 N -0.896 5.896 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.266 1.266 25 N -0.463 5.463 26 C 0.134 3.866 27 N -0.495 5.495 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.187 0.813 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.027 0.973 41 H 0.020 0.980 42 H 0.265 0.735 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.494 -18.090 6.820 33.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.011 4.011 4 C -0.159 4.159 5 C -0.005 4.005 6 O -0.195 6.195 7 C 0.101 3.899 8 C -0.110 4.110 9 N -0.078 5.078 10 C -0.024 4.024 11 C -0.059 4.059 12 N -0.088 5.088 13 O 0.021 5.979 14 C -0.006 4.006 15 C -0.059 4.059 16 C -0.047 4.047 17 C -0.564 4.564 18 H 0.097 0.903 19 C -0.128 4.128 20 N -0.534 5.534 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.190 1.190 25 N -0.195 5.195 26 C -0.026 4.026 27 N -0.224 5.224 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.204 0.796 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.045 0.955 41 H 0.038 0.962 42 H 0.075 0.925 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -27.923 -18.739 6.692 34.287 hybrid contribution -0.662 0.334 -0.991 1.238 sum -28.585 -18.404 5.701 34.472 Atomic orbital electron populations 1.22778 0.80451 1.03068 1.00205 1.87859 1.20132 1.27509 1.95482 1.22294 0.92826 0.85118 1.00860 1.21409 0.93293 0.95914 1.05272 1.22559 0.77014 0.97690 1.03259 1.86236 1.20945 1.25477 1.86880 1.21147 0.90916 0.85791 0.92036 1.23044 0.88087 0.98314 1.01591 1.68382 1.37854 0.96817 1.04748 1.18642 0.90241 0.89036 1.04509 1.22972 0.88085 0.91419 1.03382 1.74790 1.12987 0.99665 1.21343 1.85278 1.13127 1.33980 1.65508 1.29770 0.92163 0.86627 0.91990 1.20609 0.81822 1.00277 1.03173 1.19640 0.97768 0.97806 0.89487 1.20917 1.00422 1.40023 0.94990 0.90298 1.24928 0.94613 0.94260 0.99047 1.69887 1.14489 1.41871 1.27183 0.86848 0.79639 0.79511 0.83787 1.20091 1.21114 1.19020 1.72192 1.11200 1.15724 1.20399 1.23392 0.90466 0.96854 0.91890 1.68180 1.39574 0.97928 1.16676 0.93859 0.93857 0.89346 0.92767 0.92747 0.89710 0.89726 0.90922 0.90912 0.79632 0.88209 0.87316 0.95464 0.96212 0.92472 0.80083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.83 10.70 -35.23 -0.38 -3.21 16 3 C 0.07 0.36 5.94 37.16 0.22 0.58 16 4 C -0.12 -0.71 5.95 -26.73 -0.16 -0.87 16 5 C 0.07 0.48 5.32 37.16 0.20 0.68 16 6 O -0.29 -2.61 10.12 -18.54 -0.19 -2.80 16 7 C 0.28 2.99 7.50 -16.84 -0.13 2.86 16 8 C 0.06 0.61 11.17 -17.18 -0.19 0.42 16 9 N -0.36 -5.19 10.43 -9.45 -0.10 -5.29 16 10 C 0.11 1.65 6.75 -82.79 -0.56 1.09 16 11 C 0.21 3.56 7.91 -156.12 -1.24 2.33 16 12 N -0.38 -6.15 11.85 30.96 0.37 -5.78 16 13 O 0.08 1.37 11.29 18.04 0.20 1.57 16 14 C 0.21 3.75 7.75 -12.99 -0.10 3.64 16 15 C -0.02 -0.35 5.78 -27.88 -0.16 -0.51 16 16 C -0.01 -0.19 4.02 -27.88 -0.11 -0.30 16 17 C -0.53 -14.00 9.66 -34.44 -0.33 -14.33 16 18 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -26.59 13.96 55.43 0.77 -25.81 16 21 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 25 N -0.46 -8.60 11.57 -9.89 -0.11 -8.71 16 26 C 0.13 1.58 10.86 -17.06 -0.19 1.40 16 27 N -0.49 -5.47 9.38 -12.85 -0.12 -5.59 16 28 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 36 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 37 H 0.19 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 40 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 41 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.18 1.81 7.86 -52.49 -0.41 1.40 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -32.23 379.11 -6.08 -38.30 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -5.84 Total: -5.10 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.73 Total: 0.21 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.81 Total: -51.18 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.36 Total: -4.43 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.23 -6.08 -38.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361270053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.628 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds