Wall clock time and date at job start Tue Mar 31 2020 17:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99963 * 2 1 4 4 C 1.53006 * 109.47265 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46997 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46728 * 180.02562 * 5 4 3 7 7 C 1.35615 * 117.00102 * 180.02562 * 6 5 4 8 8 C 1.39294 * 119.97603 * 179.97438 * 7 6 5 9 9 N 1.31775 * 120.03486 * 179.97438 * 8 7 6 10 10 C 1.33030 * 119.98346 * 0.02562 * 9 8 7 11 11 C 1.48396 * 120.02809 * 179.97438 * 10 9 8 12 12 N 1.30767 * 126.41583 * 179.68459 * 11 10 9 13 13 O 1.21287 * 110.09485 * 179.84330 * 12 11 10 14 14 C 1.33668 * 110.03113 * 0.42723 * 13 12 11 15 15 C 1.50704 * 126.44255 * 179.77357 * 14 13 12 16 16 C 1.52996 * 109.46820 * 269.96024 * 15 14 13 17 17 C 1.50709 * 109.47204 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99699 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00208 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00032 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99936 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46914 * 90.00206 * 21 19 17 23 23 H 1.48497 * 109.46962 * 209.99794 * 21 19 17 24 24 H 1.48500 * 109.47230 * 330.00203 * 21 19 17 25 25 N 1.30970 * 107.12477 * 359.73629 * 14 13 12 26 26 C 1.39258 * 119.94405 * 359.97438 * 10 9 8 27 27 N 1.32083 * 119.96613 * 359.72274 * 26 10 9 28 28 H 1.08998 * 109.47485 * 299.99796 * 1 2 3 29 29 H 1.09007 * 109.47297 * 60.00209 * 1 2 3 30 30 H 1.09003 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47075 * 60.00062 * 3 2 1 32 32 H 1.08996 * 109.47405 * 300.00238 * 3 2 1 33 33 H 1.09000 * 109.46866 * 60.00127 * 4 3 2 34 34 H 1.09001 * 109.46611 * 300.00244 * 4 3 2 35 35 H 1.09000 * 109.47486 * 60.00167 * 5 4 3 36 36 H 1.09001 * 109.47362 * 299.99445 * 5 4 3 37 37 H 1.07994 * 119.98279 * 359.97101 * 8 7 6 38 38 H 1.09005 * 109.46848 * 29.95359 * 15 14 13 39 39 H 1.08991 * 109.47384 * 149.95818 * 15 14 13 40 40 H 1.08997 * 109.47125 * 299.99343 * 16 15 14 41 41 H 1.08996 * 109.47750 * 59.99584 * 16 15 14 42 42 H 0.97005 * 119.99714 * 180.02562 * 20 19 17 43 43 H 1.08002 * 120.01149 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 8 5.5823 2.4695 0.0013 7 6 6.2915 3.6255 0.0024 8 6 7.6839 3.5877 0.0030 9 7 8.3742 4.7102 0.0035 10 6 7.7409 5.8801 0.0040 11 6 8.5173 7.1447 0.0052 12 7 8.0266 8.3569 0.0000 13 8 8.9260 9.1705 0.0059 14 6 10.1081 8.5464 0.0064 15 6 11.4657 9.2005 0.0080 16 6 11.9267 9.4222 -1.4339 17 6 13.2842 10.0769 -1.4323 18 1 13.7693 10.3118 -0.4964 19 6 13.9067 10.3759 -2.6256 20 7 15.0915 10.9468 -2.6241 21 14 13.0679 9.9690 -4.2443 22 1 12.2370 11.1220 -4.6748 23 1 14.0965 9.6870 -5.2776 24 1 12.2035 8.7746 -4.0674 25 7 9.8647 7.2595 0.0059 26 6 6.3488 5.9169 0.0034 27 7 5.6590 4.7906 -0.0032 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6439 0.8909 35 1 3.8357 3.1231 0.8913 36 1 3.8365 3.1235 -0.8887 37 1 8.1980 2.6380 0.0031 38 1 11.4061 10.1600 0.5219 39 1 12.1787 8.5564 0.5225 40 1 11.9864 8.4628 -1.9478 41 1 11.2137 10.0663 -1.9485 42 1 15.5293 11.1575 -3.4637 43 1 5.8336 6.8661 0.0034 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361270053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:00 Heat of formation + Delta-G solvation = 3.570700 kcal Electronic energy + Delta-G solvation = -26359.960094 eV Core-core repulsion = 22215.546765 eV Total energy + Delta-G solvation = -4144.413329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.66564 -42.57389 -39.98120 -38.87530 -37.20263 -36.31232 -35.42286 -34.60327 -34.17108 -32.69453 -31.47114 -28.40901 -28.04936 -26.91544 -26.13800 -25.58425 -24.42614 -23.50647 -22.66951 -22.20908 -19.83982 -19.48201 -19.24327 -19.00483 -18.41306 -17.89691 -17.55636 -17.32623 -16.92676 -16.35791 -16.17254 -15.77741 -15.72983 -15.67087 -15.44185 -15.11739 -14.71944 -14.49165 -14.42318 -13.72373 -13.63165 -13.27970 -13.18926 -12.90423 -12.84104 -12.80244 -12.66691 -12.48576 -12.37767 -12.20286 -12.07037 -11.95724 -11.81331 -11.76983 -11.43447 -11.12575 -10.75290 -10.67962 -10.61526 -9.82463 -8.27791 -6.31838 -0.88000 -0.28052 0.14424 1.17172 1.36267 1.39658 1.41539 1.48889 1.70279 2.04024 2.36232 2.42017 2.54731 2.66465 2.92353 3.08235 3.16803 3.42520 3.78806 3.81001 3.88413 3.94677 4.12710 4.27755 4.28727 4.33988 4.36590 4.41043 4.44633 4.46439 4.52028 4.52862 4.68181 4.80749 4.85192 4.88490 4.96926 5.04529 5.26843 5.37673 5.59699 5.74506 5.84773 6.15907 6.25144 6.37037 6.75954 6.95974 7.32768 8.87882 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.026703 B = 0.001643 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.313483 B =17039.433285 C =17375.434990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.064 3.936 4 C -0.114 4.114 5 C 0.068 3.932 6 O -0.289 6.289 7 C 0.296 3.704 8 C 0.061 3.939 9 N -0.392 5.392 10 C 0.083 3.917 11 C 0.213 3.787 12 N -0.377 5.377 13 O 0.083 5.917 14 C 0.215 3.785 15 C -0.009 4.009 16 C -0.005 4.005 17 C -0.526 4.526 18 H 0.054 0.946 19 C 0.016 3.984 20 N -0.943 5.943 21 Si 0.936 3.064 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.258 1.258 25 N -0.487 5.487 26 C 0.147 3.853 27 N -0.496 5.496 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.215 0.785 38 H 0.121 0.879 39 H 0.112 0.888 40 H 0.018 0.982 41 H 0.027 0.973 42 H 0.267 0.733 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.078 -19.320 6.594 36.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.012 4.012 4 C -0.152 4.152 5 C -0.007 4.007 6 O -0.193 6.193 7 C 0.112 3.888 8 C -0.107 4.107 9 N -0.108 5.108 10 C -0.054 4.054 11 C -0.058 4.058 12 N -0.086 5.086 13 O 0.023 5.977 14 C -0.005 4.005 15 C -0.048 4.048 16 C -0.044 4.044 17 C -0.564 4.564 18 H 0.073 0.927 19 C -0.182 4.182 20 N -0.583 5.583 21 Si 0.760 3.240 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.182 1.182 25 N -0.220 5.220 26 C -0.013 4.013 27 N -0.225 5.225 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.231 0.769 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -30.538 -19.953 6.478 37.050 hybrid contribution 0.037 0.564 -0.838 1.011 sum -30.502 -19.389 5.640 36.580 Atomic orbital electron populations 1.22940 0.79155 1.03922 1.01038 1.87814 1.21686 1.28520 1.95676 1.22354 0.92274 0.84780 1.01823 1.21340 0.93753 0.95151 1.04937 1.22724 0.75692 0.98448 1.03793 1.86252 1.22173 1.24680 1.86182 1.21257 0.91105 0.86019 0.90466 1.23469 0.88449 0.98370 1.00399 1.68300 1.39175 0.97584 1.05732 1.18656 0.90997 0.88437 1.07345 1.23366 0.87624 0.92386 1.02455 1.74763 1.12617 0.99528 1.21679 1.85268 1.12882 1.34004 1.65556 1.29485 0.92171 0.86513 0.92297 1.20379 0.82179 1.01680 1.00553 1.19500 0.95638 0.96767 0.92487 1.21257 1.02053 1.39132 0.93973 0.92745 1.25761 0.95200 0.94442 1.02754 1.70019 1.16272 1.43880 1.28137 0.85876 0.78751 0.79779 0.79576 1.18912 1.21022 1.18215 1.72176 1.12521 1.16253 1.21060 1.23519 0.89449 0.97676 0.90617 1.68262 1.39280 0.97925 1.17033 0.92977 0.93050 0.88614 0.91740 0.91843 0.90122 0.90003 0.90277 0.90450 0.76897 0.86066 0.86954 0.96403 0.95445 0.92398 0.78593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.42 -5.46 10.70 -148.98 -1.59 -7.06 16 3 C 0.06 0.58 5.94 71.98 0.43 1.01 16 4 C -0.11 -1.14 5.95 30.60 0.18 -0.96 16 5 C 0.07 0.78 5.32 71.98 0.38 1.16 16 6 O -0.29 -4.51 10.12 -89.26 -0.90 -5.41 16 7 C 0.30 5.57 7.50 84.84 0.64 6.21 16 8 C 0.06 1.21 11.17 84.96 0.95 2.16 16 9 N -0.39 -10.80 10.43 -183.80 -1.92 -12.72 16 10 C 0.08 2.30 6.75 41.92 0.28 2.59 16 11 C 0.21 6.95 7.91 137.28 1.09 8.04 16 12 N -0.38 -11.78 11.85 -59.15 -0.70 -12.48 16 13 O 0.08 2.65 11.29 74.62 0.84 3.50 16 14 C 0.21 7.31 7.75 88.36 0.68 7.99 16 15 C -0.01 -0.31 5.78 29.85 0.17 -0.14 16 16 C -0.01 -0.23 4.02 29.85 0.12 -0.11 16 17 C -0.53 -28.15 9.66 25.60 0.25 -27.91 16 18 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 19 C 0.02 0.92 5.47 84.65 0.46 1.39 16 20 N -0.94 -56.87 13.96 21.44 0.30 -56.57 16 21 Si 0.94 43.35 27.47 68.60 1.88 45.23 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.26 -11.53 6.54 99.48 0.65 -10.88 16 25 N -0.49 -17.76 11.57 -302.53 -3.50 -21.26 16 26 C 0.15 3.23 10.86 84.90 0.92 4.15 16 27 N -0.50 -9.90 9.38 -307.31 -2.88 -12.79 16 28 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.84 8.11 -2.39 -0.02 0.82 16 36 H 0.08 0.85 8.11 -2.39 -0.02 0.83 16 37 H 0.21 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.12 3.64 8.14 -2.38 -0.02 3.62 16 39 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 40 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 41 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 42 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 43 H 0.20 3.55 7.86 -2.91 -0.02 3.53 16 Total: -1.00 -68.83 379.11 0.31 -68.52 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 0.98 Total: 4.03 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 7.81 Total: 7.01 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -8.70 Total: -115.82 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -1.66 Total: -8.97 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.23 kcal Total: -68.83 0.31 -68.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361270053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.088 kcal (2) G-P(sol) polarization free energy of solvation -68.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds