Wall clock time and date at job start Tue Mar 31 2020 18:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00280 * 2 1 4 4 H 1.48501 * 109.47380 * 270.00016 * 3 2 1 5 5 H 1.48497 * 109.47273 * 30.00216 * 3 2 1 6 6 H 1.48503 * 109.47233 * 150.00284 * 3 2 1 7 7 C 1.37885 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99345 * 172.32988 * 7 2 1 9 9 C 1.50696 * 119.99912 * 352.32933 * 7 2 1 10 10 C 1.52999 * 115.55099 * 294.73598 * 9 7 2 11 11 N 1.46506 * 109.46988 * 275.64395 * 10 9 7 12 12 C 1.34771 * 120.00228 * 185.00668 * 11 10 9 13 13 O 1.21591 * 119.99477 * 4.87642 * 12 11 10 14 14 N 1.34776 * 120.00393 * 184.88135 * 12 11 10 15 15 C 1.47063 * 136.05697 * 175.06317 * 14 12 11 16 16 C 1.53496 * 87.98259 * 207.07943 * 15 14 12 17 17 O 1.42900 * 114.20974 * 220.34293 * 16 15 14 18 18 C 1.50703 * 114.20695 * 87.52111 * 16 15 14 19 19 C 1.38241 * 119.97183 * 329.71985 * 18 16 15 20 20 C 1.38200 * 120.02609 * 179.76997 * 19 18 16 21 21 C 1.38461 * 119.97365 * 0.50992 * 20 19 18 22 22 F 1.35096 * 120.02469 * 179.76516 * 21 20 19 23 23 C 1.38465 * 119.94598 * 359.74492 * 21 20 19 24 24 C 1.38192 * 119.97388 * 0.02562 * 23 21 20 25 25 C 1.47068 * 136.05450 * 355.00421 * 14 12 11 26 26 C 1.52997 * 117.51593 * 80.44217 * 9 7 2 27 27 C 1.52991 * 60.00349 * 107.47821 * 26 9 7 28 28 H 0.97003 * 119.99404 * 5.00340 * 1 2 3 29 29 H 1.08994 * 109.47342 * 155.64717 * 10 9 7 30 30 H 1.09000 * 109.47300 * 35.63834 * 10 9 7 31 31 H 0.97005 * 120.00138 * 4.99929 * 11 10 9 32 32 H 1.09000 * 113.47021 * 321.86010 * 15 14 12 33 33 H 1.08994 * 113.47179 * 92.30476 * 15 14 12 34 34 H 0.96698 * 114.00709 * 179.97438 * 17 16 15 35 35 H 1.08007 * 119.98750 * 0.02601 * 19 18 16 36 36 H 1.07999 * 120.01380 * 180.25823 * 20 19 18 37 37 H 1.07994 * 120.00975 * 179.97438 * 23 21 20 38 38 H 1.07997 * 119.98786 * 180.02562 * 24 23 21 39 39 H 1.09004 * 113.46551 * 267.69287 * 25 14 12 40 40 H 1.08992 * 113.47066 * 38.08034 * 25 14 12 41 41 H 1.09004 * 117.49707 * 214.96903 * 26 9 7 42 42 H 1.08999 * 117.50006 * 359.97438 * 26 9 7 43 43 H 1.09004 * 117.50070 * 252.51043 * 27 26 9 44 44 H 1.08999 * 117.52570 * 107.48104 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0773 -1.1982 -0.1254 9 6 1.2610 -2.4934 0.1731 10 6 0.5824 -2.6891 1.5303 11 7 1.5542 -3.2190 2.4902 12 6 1.1559 -3.5668 3.7299 13 8 -0.0232 -3.5249 4.0237 14 7 2.0646 -3.9610 4.6439 15 6 2.0453 -4.3188 6.0702 16 6 3.5111 -3.8695 6.1470 17 8 4.3409 -4.7120 6.9492 18 6 3.6931 -2.4013 6.4340 19 6 2.7454 -1.4910 6.0049 20 6 2.9089 -0.1449 6.2716 21 6 4.0277 0.2931 6.9598 22 9 4.1909 1.6093 7.2170 23 6 4.9789 -0.6191 7.3845 24 6 4.8109 -1.9651 7.1207 25 6 3.5116 -4.2236 4.6534 26 6 0.5634 -3.0784 -1.0565 27 6 1.8355 -3.7334 -0.5149 28 1 -0.4849 0.8369 -0.0733 29 1 -0.2444 -3.3915 1.4252 30 1 0.2031 -1.7320 1.8883 31 1 2.4842 -3.3197 2.2335 32 1 1.3705 -3.7017 6.6635 33 1 1.9084 -5.3853 6.2484 34 1 5.2637 -4.4265 6.9952 35 1 1.8748 -1.8324 5.4645 36 1 2.1662 0.5657 5.9399 37 1 5.8522 -0.2786 7.9209 38 1 5.5525 -2.6768 7.4522 39 1 3.7651 -5.2649 4.4544 40 1 4.0834 -3.5263 4.0413 41 1 -0.3791 -3.6027 -0.8986 42 1 0.6417 -2.5232 -1.9913 43 1 2.7510 -3.6093 -1.0934 44 1 1.7304 -4.6886 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368253302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:43 Heat of formation + Delta-G solvation = -19.756225 kcal Electronic energy + Delta-G solvation = -29086.590687 eV Core-core repulsion = 24921.245865 eV Total energy + Delta-G solvation = -4165.344822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.03282 -41.27721 -39.03018 -37.95592 -36.71862 -35.69675 -33.24430 -32.08079 -31.28511 -30.99968 -28.60627 -26.41259 -25.93643 -24.87406 -23.33284 -23.13435 -21.34653 -20.80692 -19.41837 -19.12538 -18.57769 -17.84073 -17.34764 -16.57820 -16.22565 -15.95293 -15.71640 -15.50256 -14.97175 -14.71978 -14.45867 -14.34882 -13.90543 -13.75204 -13.57227 -13.36357 -13.28230 -13.13787 -13.02617 -12.61176 -12.40267 -12.09943 -11.77668 -11.57361 -11.33447 -11.13529 -11.03060 -10.94629 -10.56064 -10.42994 -10.33270 -9.85216 -9.51962 -9.31658 -9.09694 -8.77973 -8.72603 -8.63542 -8.26150 -8.05793 -6.11604 -4.18287 0.83623 1.02556 2.61641 3.23217 3.24641 3.32020 3.33521 3.52434 3.88744 4.00167 4.11665 4.14775 4.32330 4.41129 4.52917 4.66401 4.85009 5.06217 5.09772 5.24256 5.29482 5.32110 5.35691 5.48415 5.53878 5.66838 5.68977 5.79834 5.90893 5.97614 6.08314 6.21884 6.27762 6.43336 6.58924 6.63080 6.65287 6.84559 7.01962 7.17510 7.25789 7.37282 7.46814 7.57941 7.80802 8.30985 8.47338 8.80849 9.06142 9.46736 10.96062 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.004421 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.996584 B = 6331.280820 C = 8347.811480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.499 4.499 8 H 0.060 0.940 9 C 0.034 3.966 10 C 0.181 3.819 11 N -0.719 5.719 12 C 0.732 3.268 13 O -0.591 6.591 14 N -0.665 5.665 15 C 0.144 3.856 16 C 0.133 3.867 17 O -0.535 6.535 18 C -0.106 4.106 19 C -0.063 4.063 20 C -0.146 4.146 21 C 0.103 3.897 22 F -0.139 7.139 23 C -0.154 4.154 24 C -0.083 4.083 25 C 0.083 3.917 26 C -0.163 4.163 27 C -0.208 4.208 28 H 0.263 0.737 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.394 0.606 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.380 0.620 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.278 -6.214 14.292 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.130 4.130 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.034 3.966 10 C 0.058 3.942 11 N -0.371 5.371 12 C 0.435 3.565 13 O -0.469 6.469 14 N -0.409 5.409 15 C 0.020 3.980 16 C 0.091 3.909 17 O -0.340 6.340 18 C -0.106 4.106 19 C -0.081 4.081 20 C -0.165 4.165 21 C 0.083 3.917 22 F -0.118 7.118 23 C -0.173 4.173 24 C -0.101 4.101 25 C -0.041 4.041 26 C -0.202 4.202 27 C -0.245 4.245 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.227 0.773 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.229 0.771 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.472 -6.204 14.448 18.356 hybrid contribution 1.425 1.441 -0.390 2.063 sum 10.897 -4.763 14.058 18.413 Atomic orbital electron populations 1.69961 1.05876 1.27048 1.48055 1.24970 0.94780 0.98920 0.94371 0.86658 0.80005 0.83598 0.78199 1.20622 1.21067 1.19806 1.20400 0.93098 0.88701 1.51453 0.92195 1.19070 0.97741 0.91476 0.88355 1.20952 0.88347 0.97683 0.87198 1.45283 1.13485 1.67577 1.10747 1.15253 0.83115 0.78106 0.79976 1.90920 1.14664 1.62007 1.79333 1.48298 1.08712 1.72662 1.11199 1.22750 0.92471 1.01573 0.81199 1.21316 0.92818 0.86362 0.90421 1.86572 1.23928 1.52117 1.71397 1.19695 0.96089 0.93994 1.00854 1.21099 0.99016 0.91560 0.96389 1.21283 0.97796 0.97248 1.00198 1.17801 0.96242 0.77900 0.99723 1.91508 1.95543 1.32522 1.92217 1.21031 0.99842 0.92999 1.03443 1.20645 0.96944 0.94928 0.97614 1.23645 0.82849 1.02118 0.95507 1.22709 0.93391 1.03537 1.00533 1.22872 0.97817 0.96912 1.06889 0.92720 0.94133 0.90299 0.77276 0.89663 0.88942 0.77053 0.84057 0.84249 0.84556 0.84963 0.88856 0.90003 0.91594 0.89945 0.90425 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.06 12.59 55.43 0.70 -23.37 16 2 C 0.07 1.94 5.23 -17.82 -0.09 1.85 16 3 Si 0.89 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.50 -12.76 8.82 -34.44 -0.30 -13.06 16 8 H 0.06 1.52 7.83 -52.48 -0.41 1.11 16 9 C 0.03 0.80 1.32 -155.66 -0.20 0.60 16 10 C 0.18 4.15 5.53 -4.04 -0.02 4.13 16 11 N -0.72 -13.87 5.47 -65.23 -0.36 -14.23 16 12 C 0.73 13.89 7.88 -86.92 -0.68 13.21 16 13 O -0.59 -13.58 17.10 5.29 0.09 -13.49 16 14 N -0.67 -9.46 2.44 -191.01 -0.47 -9.92 16 15 C 0.14 1.70 7.48 -8.50 -0.06 1.63 16 16 C 0.13 1.29 2.05 -91.26 -0.19 1.10 16 17 O -0.53 -4.19 13.32 -35.23 -0.47 -4.66 16 18 C -0.11 -1.11 5.31 -104.62 -0.56 -1.67 16 19 C -0.06 -0.82 8.76 -39.59 -0.35 -1.16 16 20 C -0.15 -1.92 10.03 -39.51 -0.40 -2.31 16 21 C 0.10 1.25 7.30 -39.42 -0.29 0.96 16 22 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 23 C -0.15 -1.48 10.03 -39.51 -0.40 -1.88 16 24 C -0.08 -0.71 9.37 -39.60 -0.37 -1.08 16 25 C 0.08 0.87 7.66 -8.50 -0.07 0.81 16 26 C -0.16 -3.64 9.88 -26.74 -0.26 -3.91 16 27 C -0.21 -4.18 9.78 -26.73 -0.26 -4.45 16 28 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 29 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 30 H 0.08 2.08 7.26 -51.93 -0.38 1.70 16 31 H 0.39 6.90 8.14 -40.82 -0.33 6.57 16 32 H 0.09 1.04 7.68 -51.93 -0.40 0.64 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.38 1.50 7.17 45.56 0.33 1.83 16 35 H 0.14 2.16 5.47 -52.48 -0.29 1.87 16 36 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 0.65 6.35 -52.49 -0.33 0.32 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.85 8.11 -51.93 -0.42 0.42 16 41 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 42 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -31.16 374.57 -9.50 -40.66 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.16 Total: 10.87 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -4.50 Total: -5.24 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.13 Total: -47.52 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.38 Total: -18.15 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.16 -9.50 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368253302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.909 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds