Wall clock time and date at job start Tue Mar 31 2020 18:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00280 * 2 1 4 4 H 1.48501 * 109.47380 * 270.00016 * 3 2 1 5 5 H 1.48497 * 109.47273 * 30.00216 * 3 2 1 6 6 H 1.48503 * 109.47233 * 150.00284 * 3 2 1 7 7 C 1.37885 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99345 * 172.32988 * 7 2 1 9 9 C 1.50696 * 119.99912 * 352.32933 * 7 2 1 10 10 C 1.52999 * 115.55099 * 294.73598 * 9 7 2 11 11 N 1.46506 * 109.46988 * 275.64395 * 10 9 7 12 12 C 1.34771 * 120.00228 * 185.00668 * 11 10 9 13 13 O 1.21591 * 119.99477 * 4.87642 * 12 11 10 14 14 N 1.34776 * 120.00393 * 184.88135 * 12 11 10 15 15 C 1.47063 * 136.05697 * 175.06317 * 14 12 11 16 16 C 1.53496 * 87.98259 * 207.07943 * 15 14 12 17 17 O 1.42900 * 114.20974 * 220.34293 * 16 15 14 18 18 C 1.50703 * 114.20695 * 87.52111 * 16 15 14 19 19 C 1.38241 * 119.97183 * 329.71985 * 18 16 15 20 20 C 1.38200 * 120.02609 * 179.76997 * 19 18 16 21 21 C 1.38461 * 119.97365 * 0.50992 * 20 19 18 22 22 F 1.35096 * 120.02469 * 179.76516 * 21 20 19 23 23 C 1.38465 * 119.94598 * 359.74492 * 21 20 19 24 24 C 1.38192 * 119.97388 * 0.02562 * 23 21 20 25 25 C 1.47068 * 136.05450 * 355.00421 * 14 12 11 26 26 C 1.52997 * 117.51593 * 80.44217 * 9 7 2 27 27 C 1.52991 * 60.00349 * 107.47821 * 26 9 7 28 28 H 0.97003 * 119.99404 * 5.00340 * 1 2 3 29 29 H 1.08994 * 109.47342 * 155.64717 * 10 9 7 30 30 H 1.09000 * 109.47300 * 35.63834 * 10 9 7 31 31 H 0.97005 * 120.00138 * 4.99929 * 11 10 9 32 32 H 1.09000 * 113.47021 * 321.86010 * 15 14 12 33 33 H 1.08994 * 113.47179 * 92.30476 * 15 14 12 34 34 H 0.96698 * 114.00709 * 179.97438 * 17 16 15 35 35 H 1.08007 * 119.98750 * 0.02601 * 19 18 16 36 36 H 1.07999 * 120.01380 * 180.25823 * 20 19 18 37 37 H 1.07994 * 120.00975 * 179.97438 * 23 21 20 38 38 H 1.07997 * 119.98786 * 180.02562 * 24 23 21 39 39 H 1.09004 * 113.46551 * 267.69287 * 25 14 12 40 40 H 1.08992 * 113.47066 * 38.08034 * 25 14 12 41 41 H 1.09004 * 117.49707 * 214.96903 * 26 9 7 42 42 H 1.08999 * 117.50006 * 359.97438 * 26 9 7 43 43 H 1.09004 * 117.50070 * 252.51043 * 27 26 9 44 44 H 1.08999 * 117.52570 * 107.48104 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0773 -1.1982 -0.1254 9 6 1.2610 -2.4934 0.1731 10 6 0.5824 -2.6891 1.5303 11 7 1.5542 -3.2190 2.4902 12 6 1.1559 -3.5668 3.7299 13 8 -0.0232 -3.5249 4.0237 14 7 2.0646 -3.9610 4.6439 15 6 2.0453 -4.3188 6.0702 16 6 3.5111 -3.8695 6.1470 17 8 4.3409 -4.7120 6.9492 18 6 3.6931 -2.4013 6.4340 19 6 2.7454 -1.4910 6.0049 20 6 2.9089 -0.1449 6.2716 21 6 4.0277 0.2931 6.9598 22 9 4.1909 1.6093 7.2170 23 6 4.9789 -0.6191 7.3845 24 6 4.8109 -1.9651 7.1207 25 6 3.5116 -4.2236 4.6534 26 6 0.5634 -3.0784 -1.0565 27 6 1.8355 -3.7334 -0.5149 28 1 -0.4849 0.8369 -0.0733 29 1 -0.2444 -3.3915 1.4252 30 1 0.2031 -1.7320 1.8883 31 1 2.4842 -3.3197 2.2335 32 1 1.3705 -3.7017 6.6635 33 1 1.9084 -5.3853 6.2484 34 1 5.2637 -4.4265 6.9952 35 1 1.8748 -1.8324 5.4645 36 1 2.1662 0.5657 5.9399 37 1 5.8522 -0.2786 7.9209 38 1 5.5525 -2.6768 7.4522 39 1 3.7651 -5.2649 4.4544 40 1 4.0834 -3.5263 4.0413 41 1 -0.3791 -3.6027 -0.8986 42 1 0.6417 -2.5232 -1.9913 43 1 2.7510 -3.6093 -1.0934 44 1 1.7304 -4.6886 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368253302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:42 Heat of formation + Delta-G solvation = -40.092052 kcal Electronic energy + Delta-G solvation = -29087.472515 eV Core-core repulsion = 24921.245865 eV Total energy + Delta-G solvation = -4166.226650 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.99360 -42.26558 -40.34480 -39.05143 -38.36274 -36.55745 -34.90355 -34.06587 -32.14204 -31.91234 -29.84040 -27.89556 -27.26157 -26.51926 -24.31230 -24.00778 -23.03025 -21.90574 -21.21683 -20.40957 -19.44121 -19.07234 -18.26857 -18.01997 -17.47441 -17.28384 -16.79123 -16.68609 -16.52793 -16.10781 -15.76100 -15.51756 -15.25852 -15.01988 -14.72792 -14.40352 -14.39848 -14.26292 -14.03031 -13.87206 -13.63694 -13.47030 -13.18881 -12.99666 -12.95138 -12.82293 -12.40532 -12.19633 -12.06967 -12.00361 -11.57830 -11.36700 -11.07638 -10.98811 -10.53354 -10.19040 -10.14196 -10.08965 -9.66169 -9.51367 -8.13295 -6.23934 -0.04286 0.17330 1.37231 1.38763 1.41648 1.48617 2.09749 2.38402 2.38837 2.93048 3.07268 3.13600 3.15742 3.26609 3.47141 3.56017 3.67191 3.84801 3.98554 4.20232 4.21736 4.35581 4.42141 4.50855 4.53476 4.54799 4.63953 4.68651 4.69948 4.76303 4.85677 4.94431 4.95632 5.06372 5.07500 5.17949 5.24299 5.37340 5.54873 5.56505 5.67323 5.79334 5.79760 6.23990 6.34737 6.75750 6.81053 7.04518 7.43601 7.58121 8.94311 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.004421 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.996584 B = 6331.280820 C = 8347.811480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.027 3.973 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.009 3.991 10 C 0.201 3.799 11 N -0.713 5.713 12 C 0.731 3.269 13 O -0.641 6.641 14 N -0.666 5.666 15 C 0.133 3.867 16 C 0.161 3.839 17 O -0.529 6.529 18 C -0.106 4.106 19 C -0.082 4.082 20 C -0.171 4.171 21 C 0.085 3.915 22 F -0.149 7.149 23 C -0.144 4.144 24 C -0.065 4.065 25 C 0.084 3.916 26 C -0.174 4.174 27 C -0.169 4.169 28 H 0.260 0.740 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.405 0.595 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.402 0.598 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.168 0.832 38 H 0.183 0.817 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.353 -8.104 15.653 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.174 4.174 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.190 1.190 7 C -0.540 4.540 8 H 0.080 0.920 9 C 0.008 3.992 10 C 0.077 3.923 11 N -0.366 5.366 12 C 0.434 3.566 13 O -0.524 6.524 14 N -0.408 5.408 15 C 0.010 3.990 16 C 0.118 3.882 17 O -0.337 6.337 18 C -0.107 4.107 19 C -0.100 4.100 20 C -0.190 4.190 21 C 0.066 3.934 22 F -0.128 7.128 23 C -0.162 4.162 24 C -0.082 4.082 25 C -0.039 4.039 26 C -0.212 4.212 27 C -0.206 4.206 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.240 0.760 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.255 0.745 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.186 0.814 38 H 0.200 0.800 39 H 0.137 0.863 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 13.646 -8.119 15.836 22.426 hybrid contribution 0.214 1.970 -0.716 2.107 sum 13.860 -6.149 15.121 21.413 Atomic orbital electron populations 1.70082 1.07232 1.27374 1.49705 1.25645 0.95363 1.01878 0.94487 0.85782 0.78953 0.80085 0.78263 1.19937 1.21872 1.19000 1.20700 0.93294 0.89745 1.50234 0.91979 1.19044 0.99191 0.92399 0.88544 1.20405 0.88781 0.95220 0.87894 1.44965 1.13261 1.67688 1.10702 1.15295 0.83110 0.77943 0.80202 1.90872 1.17259 1.63979 1.80244 1.48152 1.10059 1.71112 1.11436 1.23018 0.94234 1.02376 0.79394 1.20748 0.91637 0.85766 0.90075 1.86569 1.25392 1.51301 1.70464 1.19834 0.96127 0.94001 1.00722 1.20896 0.99266 0.92131 0.97727 1.21236 0.98625 0.97307 1.01858 1.18034 0.96803 0.78075 1.00524 1.91479 1.95593 1.33338 1.92368 1.21439 0.99648 0.92917 1.02206 1.21146 0.96535 0.95320 0.95248 1.23947 0.79946 1.03763 0.96206 1.22669 0.94930 1.04170 0.99471 1.22870 0.96866 0.96214 1.04692 0.93130 0.95434 0.94712 0.76038 0.91004 0.87271 0.74459 0.87194 0.86029 0.81431 0.79982 0.86261 0.89525 0.91239 0.91315 0.89204 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.91 12.59 21.45 0.27 -51.64 16 2 C 0.03 1.45 5.23 84.66 0.44 1.90 16 3 Si 0.94 42.83 29.55 68.60 2.03 44.86 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.50 -25.83 8.82 25.60 0.23 -25.60 16 8 H 0.06 3.10 7.83 -2.91 -0.02 3.08 16 9 C 0.01 0.43 1.32 -52.93 -0.07 0.36 16 10 C 0.20 9.61 5.53 86.38 0.48 10.09 16 11 N -0.71 -27.99 5.47 -478.54 -2.62 -30.61 16 12 C 0.73 28.56 7.88 179.06 1.41 29.97 16 13 O -0.64 -31.12 17.10 -4.00 -0.07 -31.19 16 14 N -0.67 -18.55 2.44 -876.97 -2.14 -20.69 16 15 C 0.13 2.96 7.48 83.18 0.62 3.58 16 16 C 0.16 2.58 2.05 -11.21 -0.02 2.56 16 17 O -0.53 -5.42 13.32 -148.98 -1.98 -7.40 16 18 C -0.11 -1.98 5.31 -19.86 -0.11 -2.09 16 19 C -0.08 -2.19 8.76 22.26 0.19 -2.00 16 20 C -0.17 -4.73 10.03 22.31 0.22 -4.51 16 21 C 0.08 2.01 7.30 22.38 0.16 2.17 16 22 F -0.15 -3.87 17.27 44.97 0.78 -3.09 16 23 C -0.14 -2.26 10.03 22.31 0.22 -2.04 16 24 C -0.07 -0.81 9.37 22.26 0.21 -0.60 16 25 C 0.08 1.50 7.66 83.18 0.64 2.14 16 26 C -0.17 -7.79 9.88 30.59 0.30 -7.48 16 27 C -0.17 -6.52 9.78 30.59 0.30 -6.22 16 28 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 29 H 0.03 1.36 7.87 -2.39 -0.02 1.34 16 30 H 0.03 1.95 7.26 -2.39 -0.02 1.93 16 31 H 0.40 13.88 8.14 -92.70 -0.75 13.12 16 32 H 0.07 1.79 7.68 -2.39 -0.02 1.78 16 33 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.40 0.40 7.17 -74.06 -0.53 -0.13 16 35 H 0.11 3.64 5.47 -2.91 -0.02 3.62 16 36 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.18 0.44 6.35 -2.91 -0.02 0.42 16 39 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.09 1.52 8.11 -2.39 -0.02 1.50 16 41 H 0.07 3.01 8.06 -2.39 -0.02 2.99 16 42 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 44 H 0.09 3.05 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -72.33 374.57 1.27 -71.06 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.23 Total: 26.46 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 5.23 Total: 2.23 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -4.49 Total: -102.93 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -2.05 Total: -38.59 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -72.33 1.27 -71.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368253302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.969 kcal (2) G-P(sol) polarization free energy of solvation -72.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds