Wall clock time and date at job start Tue Mar 31 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47474 * 240.00226 * 3 2 1 5 5 H 1.48504 * 109.46884 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47011 * 119.99984 * 3 2 1 7 7 C 1.38801 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00376 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99997 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46878 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47081 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47215 * 179.97438 * 12 11 10 14 14 C 1.48558 * 111.00110 * 285.41764 * 13 12 11 15 15 C 1.54384 * 104.59487 * 200.96035 * 14 13 12 16 16 C 1.54264 * 105.06049 * 23.85249 * 15 14 13 17 17 C 1.50700 * 110.32073 * 241.10338 * 16 15 14 18 18 N 1.34771 * 119.99967 * 305.69733 * 17 16 15 19 19 O 1.21279 * 119.99479 * 125.70131 * 17 16 15 20 20 C 1.50705 * 110.32226 * 118.99723 * 16 15 14 21 21 C 1.38236 * 120.00114 * 305.07288 * 20 16 15 22 22 C 1.38227 * 120.00046 * 179.80858 * 21 20 16 23 23 C 1.38242 * 119.99960 * 0.40253 * 22 21 20 24 24 C 1.38239 * 119.99707 * 359.85097 * 23 22 21 25 25 C 1.38229 * 120.00168 * 359.96115 * 24 23 22 26 26 C 1.48564 * 111.00200 * 169.99711 * 13 12 11 27 27 H 0.96996 * 120.00269 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46750 * 60.00349 * 10 9 7 29 29 H 1.08995 * 109.46875 * 300.00190 * 10 9 7 30 30 H 1.09003 * 109.47298 * 59.99839 * 11 10 9 31 31 H 1.09003 * 109.47020 * 299.99888 * 11 10 9 32 32 H 1.09003 * 109.47315 * 59.99692 * 12 11 10 33 33 H 1.09003 * 109.46974 * 299.99759 * 12 11 10 34 34 H 1.08996 * 110.40980 * 82.18301 * 14 13 12 35 35 H 1.09001 * 110.41334 * 319.73813 * 14 13 12 36 36 H 1.08996 * 110.32372 * 264.95345 * 15 14 13 37 37 H 1.08997 * 110.32414 * 142.74817 * 15 14 13 38 38 H 0.96997 * 120.00331 * 4.72863 * 18 17 16 39 39 H 0.97006 * 120.00060 * 184.72700 * 18 17 16 40 40 H 1.07998 * 119.99904 * 0.02562 * 21 20 16 41 41 H 1.07999 * 120.00189 * 180.23181 * 22 21 20 42 42 H 1.08000 * 120.00434 * 179.83327 * 23 22 21 43 43 H 1.08007 * 119.99715 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.00147 * 179.97438 * 25 24 23 45 45 H 1.09004 * 110.40920 * 40.26349 * 26 13 12 46 46 H 1.09000 * 110.51064 * 277.87377 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9795 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0005 13 7 2.6364 -7.6833 -0.0005 14 6 2.1039 -8.0524 1.3363 15 6 2.1148 -9.5962 1.3467 16 6 3.1839 -9.9965 0.3092 17 6 2.5604 -10.8039 -0.8000 18 7 1.8450 -11.9085 -0.5093 19 8 2.7024 -10.4596 -1.9542 20 6 4.2871 -10.7818 0.9707 21 6 4.9563 -10.2522 2.0581 22 6 5.9654 -10.9742 2.6673 23 6 6.3111 -12.2223 2.1839 24 6 5.6453 -12.7497 1.0931 25 6 4.6336 -12.0293 0.4864 26 6 3.7290 -8.6610 -0.2408 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7313 0.8894 29 1 3.1246 -3.7312 -0.8905 30 1 1.3711 -5.4840 -0.8914 31 1 1.3706 -5.4846 0.8886 32 1 3.7596 -6.1477 0.8899 33 1 3.7607 -6.1474 -0.8901 34 1 1.0871 -7.6787 1.4568 35 1 2.7491 -7.6624 2.1235 36 1 1.1391 -9.9837 1.0537 37 1 2.3888 -9.9662 2.3347 38 1 1.6736 -12.1459 0.4154 39 1 1.5016 -12.4662 -1.2249 40 1 4.6883 -9.2758 2.4339 41 1 6.4857 -10.5620 3.5192 42 1 7.1013 -12.7853 2.6581 43 1 5.9156 -13.7247 0.7151 44 1 4.1138 -12.4411 -0.3660 45 1 4.6285 -8.3661 0.2996 46 1 3.9377 -8.7459 -1.3073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411963411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:40 Heat of formation + Delta-G solvation = -18.132701 kcal Electronic energy + Delta-G solvation = -25833.410166 eV Core-core repulsion = 22234.348921 eV Total energy + Delta-G solvation = -3599.061245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31279 -38.94809 -38.21148 -34.82781 -33.84184 -32.40554 -32.06789 -31.29097 -30.04237 -28.61755 -25.89723 -25.20885 -23.71889 -22.73596 -22.12023 -21.91356 -20.55539 -19.60739 -18.09019 -17.44885 -17.41784 -16.78257 -15.98664 -15.45317 -15.21399 -14.96212 -14.94963 -14.77356 -14.61820 -14.17081 -14.05440 -13.63546 -13.39004 -13.27254 -13.19476 -12.80511 -12.53119 -12.10665 -11.88610 -11.79540 -11.55750 -11.47276 -11.42873 -11.17561 -11.10777 -11.01388 -10.74812 -10.59730 -10.24944 -10.09127 -9.90938 -9.50464 -9.32586 -9.12295 -9.01676 -8.47147 -8.25529 -6.48231 -6.18958 -3.88824 0.89801 0.98983 2.37213 3.15957 3.24061 3.25709 3.30081 3.33118 3.57165 3.87814 4.15913 4.26183 4.35713 4.36377 4.56587 4.60561 4.68737 4.74086 4.95752 5.03543 5.11653 5.16651 5.24308 5.25580 5.33802 5.42785 5.46519 5.53548 5.59326 5.63477 5.66202 5.79031 5.81661 5.88190 5.94226 6.06063 6.11551 6.13180 6.14661 6.38333 6.48854 6.56209 6.62947 6.78147 6.84678 6.99287 7.06162 7.63749 7.99270 8.40088 9.27015 10.89161 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.002078 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.600351 B =13468.499217 C =14184.647123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.071 0.929 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.090 4.090 12 C 0.050 3.950 13 N -0.504 5.504 14 C 0.030 3.970 15 C -0.113 4.113 16 C -0.043 4.043 17 C 0.541 3.459 18 N -0.858 5.858 19 O -0.525 6.525 20 C -0.068 4.068 21 C -0.107 4.107 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.118 4.118 26 C 0.052 3.948 27 H 0.267 0.733 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.401 0.599 39 H 0.402 0.598 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.053 0.947 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.229 -29.722 6.305 31.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.664 4.664 8 H 0.089 0.911 9 S 0.096 5.904 10 C -0.262 4.262 11 C -0.129 4.129 12 C -0.079 4.079 13 N -0.227 5.227 14 C -0.098 4.098 15 C -0.151 4.151 16 C -0.047 4.047 17 C 0.325 3.675 18 N -0.422 5.422 19 O -0.399 6.399 20 C -0.069 4.069 21 C -0.125 4.125 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.076 4.076 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.233 0.767 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.071 0.929 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.724 -29.402 5.181 30.838 hybrid contribution 2.311 0.998 0.842 2.655 sum 10.035 -28.404 6.023 30.721 Atomic orbital electron populations 1.70012 1.05901 1.27376 1.47268 1.25013 0.95082 0.99055 0.94681 0.86230 0.79235 0.81275 0.78820 1.19936 1.20837 1.19991 1.22653 0.94474 0.90863 1.58438 0.91063 1.84631 1.09597 0.99321 1.96836 1.23234 1.02811 0.97459 1.02659 1.21199 0.96821 0.91676 1.03169 1.22359 0.97340 0.87304 1.00924 1.65424 1.28286 1.02468 1.26557 1.23212 1.01946 0.93771 0.90910 1.22560 0.97910 0.96759 0.97909 1.20439 0.94458 0.95523 0.94307 1.19988 0.77564 0.80191 0.89749 1.43895 1.57895 1.28104 1.12307 1.90762 1.59638 1.68258 1.21250 1.19447 0.96774 0.94547 0.96131 1.20971 0.96047 0.99975 0.95496 1.21164 0.97310 0.94858 0.99979 1.21205 0.99824 0.95985 0.96830 1.21136 0.96062 0.99953 0.96208 1.21206 0.98076 0.94379 0.99995 1.23180 0.93096 0.88223 1.03149 0.92291 0.92425 0.92141 0.90722 0.91805 0.94549 0.90678 0.89183 0.93324 0.90205 0.89929 0.77030 0.76720 0.85817 0.85765 0.85988 0.85943 0.85837 0.92906 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 10 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 11 C -0.09 -1.54 5.33 -26.73 -0.14 -1.68 16 12 C 0.05 0.71 4.83 -3.83 -0.02 0.69 16 13 N -0.50 -6.55 5.34 -229.97 -1.23 -7.78 16 14 C 0.03 0.31 5.91 -2.18 -0.01 0.30 16 15 C -0.11 -0.93 5.64 -25.34 -0.14 -1.07 16 16 C -0.04 -0.41 0.73 -155.43 -0.11 -0.52 16 17 C 0.54 5.67 5.14 -10.99 -0.06 5.62 16 18 N -0.86 -5.35 7.47 31.22 0.23 -5.12 16 19 O -0.52 -7.86 16.26 5.56 0.09 -7.77 16 20 C -0.07 -0.57 4.74 -104.62 -0.50 -1.07 16 21 C -0.11 -0.83 8.03 -39.59 -0.32 -1.15 16 22 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 23 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 24 C -0.12 -0.79 10.05 -39.58 -0.40 -1.18 16 25 C -0.12 -0.93 8.96 -39.59 -0.35 -1.28 16 26 C 0.05 0.61 5.34 -2.18 -0.01 0.60 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 29 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.08 7.47 -51.93 -0.39 0.69 16 32 H 0.04 0.48 7.77 -51.93 -0.40 0.08 16 33 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.09 0.99 7.85 -51.93 -0.41 0.59 16 35 H 0.05 0.48 7.75 -51.93 -0.40 0.08 16 36 H 0.08 0.61 7.35 -51.93 -0.38 0.23 16 37 H 0.08 0.53 7.20 -51.93 -0.37 0.16 16 38 H 0.40 1.56 8.38 -40.82 -0.34 1.22 16 39 H 0.40 2.05 8.93 -40.82 -0.36 1.68 16 40 H 0.12 0.91 7.86 -52.49 -0.41 0.50 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 44 H 0.12 0.94 5.94 -52.49 -0.31 0.63 16 45 H 0.05 0.58 7.01 -51.93 -0.36 0.21 16 46 H 0.10 1.42 6.79 -51.93 -0.35 1.07 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -34.91 383.15 -11.18 -46.09 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.00 Total: 1.52 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -2.45 Total: -18.06 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.26 Total: -38.53 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.91 -11.18 -46.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411963411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.958 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds