Wall clock time and date at job start Tue Mar 31 2020 18:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99982 * 2 1 4 4 H 1.48500 * 109.47474 * 240.00226 * 3 2 1 5 5 H 1.48504 * 109.46884 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47011 * 119.99984 * 3 2 1 7 7 C 1.38801 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00376 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99997 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46878 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47081 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47215 * 179.97438 * 12 11 10 14 14 C 1.48558 * 111.00110 * 285.41764 * 13 12 11 15 15 C 1.54384 * 104.59487 * 200.96035 * 14 13 12 16 16 C 1.54264 * 105.06049 * 23.85249 * 15 14 13 17 17 C 1.50700 * 110.32073 * 241.10338 * 16 15 14 18 18 N 1.34771 * 119.99967 * 305.69733 * 17 16 15 19 19 O 1.21279 * 119.99479 * 125.70131 * 17 16 15 20 20 C 1.50705 * 110.32226 * 118.99723 * 16 15 14 21 21 C 1.38236 * 120.00114 * 305.07288 * 20 16 15 22 22 C 1.38227 * 120.00046 * 179.80858 * 21 20 16 23 23 C 1.38242 * 119.99960 * 0.40253 * 22 21 20 24 24 C 1.38239 * 119.99707 * 359.85097 * 23 22 21 25 25 C 1.38229 * 120.00168 * 359.96115 * 24 23 22 26 26 C 1.48564 * 111.00200 * 169.99711 * 13 12 11 27 27 H 0.96996 * 120.00269 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46750 * 60.00349 * 10 9 7 29 29 H 1.08995 * 109.46875 * 300.00190 * 10 9 7 30 30 H 1.09003 * 109.47298 * 59.99839 * 11 10 9 31 31 H 1.09003 * 109.47020 * 299.99888 * 11 10 9 32 32 H 1.09003 * 109.47315 * 59.99692 * 12 11 10 33 33 H 1.09003 * 109.46974 * 299.99759 * 12 11 10 34 34 H 1.08996 * 110.40980 * 82.18301 * 14 13 12 35 35 H 1.09001 * 110.41334 * 319.73813 * 14 13 12 36 36 H 1.08996 * 110.32372 * 264.95345 * 15 14 13 37 37 H 1.08997 * 110.32414 * 142.74817 * 15 14 13 38 38 H 0.96997 * 120.00331 * 4.72863 * 18 17 16 39 39 H 0.97006 * 120.00060 * 184.72700 * 18 17 16 40 40 H 1.07998 * 119.99904 * 0.02562 * 21 20 16 41 41 H 1.07999 * 120.00189 * 180.23181 * 22 21 20 42 42 H 1.08000 * 120.00434 * 179.83327 * 23 22 21 43 43 H 1.08007 * 119.99715 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.00147 * 179.97438 * 25 24 23 45 45 H 1.09004 * 110.40920 * 40.26349 * 26 13 12 46 46 H 1.09000 * 110.51064 * 277.87377 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9795 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0005 13 7 2.6364 -7.6833 -0.0005 14 6 2.1039 -8.0524 1.3363 15 6 2.1148 -9.5962 1.3467 16 6 3.1839 -9.9965 0.3092 17 6 2.5604 -10.8039 -0.8000 18 7 1.8450 -11.9085 -0.5093 19 8 2.7024 -10.4596 -1.9542 20 6 4.2871 -10.7818 0.9707 21 6 4.9563 -10.2522 2.0581 22 6 5.9654 -10.9742 2.6673 23 6 6.3111 -12.2223 2.1839 24 6 5.6453 -12.7497 1.0931 25 6 4.6336 -12.0293 0.4864 26 6 3.7290 -8.6610 -0.2408 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7313 0.8894 29 1 3.1246 -3.7312 -0.8905 30 1 1.3711 -5.4840 -0.8914 31 1 1.3706 -5.4846 0.8886 32 1 3.7596 -6.1477 0.8899 33 1 3.7607 -6.1474 -0.8901 34 1 1.0871 -7.6787 1.4568 35 1 2.7491 -7.6624 2.1235 36 1 1.1391 -9.9837 1.0537 37 1 2.3888 -9.9662 2.3347 38 1 1.6736 -12.1459 0.4154 39 1 1.5016 -12.4662 -1.2249 40 1 4.6883 -9.2758 2.4339 41 1 6.4857 -10.5620 3.5192 42 1 7.1013 -12.7853 2.6581 43 1 5.9156 -13.7247 0.7151 44 1 4.1138 -12.4411 -0.3660 45 1 4.6285 -8.3661 0.2996 46 1 3.9377 -8.7459 -1.3073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411963411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:39 Heat of formation + Delta-G solvation = -42.168453 kcal Electronic energy + Delta-G solvation = -25834.452435 eV Core-core repulsion = 22234.348921 eV Total energy + Delta-G solvation = -3600.103513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.06209 -39.59078 -39.12695 -35.86074 -34.72184 -34.58836 -33.00605 -31.82074 -30.90222 -29.39983 -27.87064 -26.65081 -24.46008 -23.32529 -23.13402 -22.74955 -21.68227 -20.34732 -19.54237 -18.74496 -18.12842 -17.54761 -16.89520 -16.80611 -16.50226 -16.10494 -15.89869 -15.87063 -15.56135 -15.34149 -15.09148 -14.79660 -14.38402 -14.19537 -13.97076 -13.88735 -13.62167 -13.33436 -13.18744 -12.94227 -12.89268 -12.71634 -12.50565 -12.35104 -12.34452 -12.26739 -12.04187 -11.78064 -11.58511 -11.35530 -11.13278 -10.93921 -10.61679 -10.32417 -9.85397 -9.70105 -9.42694 -8.66880 -8.36921 -6.13542 0.35714 0.46803 1.30956 1.40868 1.47514 1.57502 1.73820 2.28486 2.48698 2.78110 2.91760 2.96905 3.32377 3.39426 3.60096 3.64067 3.97570 4.01092 4.03789 4.11502 4.21135 4.24614 4.28667 4.32968 4.42058 4.42284 4.55402 4.64031 4.69790 4.71755 4.77068 4.81098 4.88388 4.95701 4.99352 5.05881 5.12408 5.17411 5.30273 5.39337 5.54918 5.58703 5.61849 5.84556 5.89552 5.98940 6.06672 6.18047 6.40038 7.04737 7.31109 8.72290 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021842 B = 0.002078 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.600351 B =13468.499217 C =14184.647123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.014 3.986 3 Si 0.995 3.005 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.198 6.198 10 C -0.087 4.087 11 C -0.077 4.077 12 C 0.061 3.939 13 N -0.522 5.522 14 C 0.025 3.975 15 C -0.104 4.104 16 C -0.036 4.036 17 C 0.538 3.462 18 N -0.835 5.835 19 O -0.578 6.578 20 C -0.076 4.076 21 C -0.114 4.114 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.120 4.120 25 C -0.128 4.128 26 C 0.053 3.947 27 H 0.271 0.729 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.416 0.584 39 H 0.410 0.590 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.120 0.880 45 H 0.062 0.938 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.875 -30.901 7.980 33.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.817 3.183 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.030 5.970 10 C -0.236 4.236 11 C -0.116 4.116 12 C -0.069 4.069 13 N -0.246 5.246 14 C -0.102 4.102 15 C -0.142 4.142 16 C -0.040 4.040 17 C 0.323 3.677 18 N -0.400 5.400 19 O -0.457 6.457 20 C -0.077 4.077 21 C -0.132 4.132 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.075 4.075 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.247 0.753 39 H 0.242 0.758 40 H 0.145 0.855 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.138 0.862 45 H 0.080 0.920 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.348 -30.636 6.893 32.764 hybrid contribution 1.814 1.225 0.332 2.214 sum 11.162 -29.411 7.225 32.277 Atomic orbital electron populations 1.70151 1.07693 1.28610 1.47918 1.26095 0.96073 1.03173 0.93775 0.85054 0.77923 0.75999 0.79362 1.19033 1.19923 1.18773 1.23005 0.94723 0.91968 1.58941 0.90916 1.84658 1.14104 1.01177 1.97032 1.23147 1.00119 0.97467 1.02868 1.21054 0.97782 0.90215 1.02503 1.22141 0.95791 0.87524 1.01423 1.65322 1.28970 1.01892 1.28454 1.23294 1.01564 0.95503 0.89876 1.22557 0.97867 0.94995 0.98787 1.20312 0.95165 0.94344 0.94131 1.20229 0.77500 0.80820 0.89175 1.43711 1.56094 1.26648 1.13530 1.90743 1.61833 1.69893 1.23243 1.19353 0.96940 0.94766 0.96645 1.21070 0.96410 1.00297 0.95466 1.21431 0.96987 0.94990 1.00357 1.21515 0.99970 0.95977 0.96507 1.21392 0.95551 1.00635 0.96193 1.21267 0.98715 0.94533 1.00133 1.23087 0.93229 0.89350 1.01819 0.91959 0.91657 0.92231 0.92311 0.91557 0.93135 0.91116 0.89874 0.92247 0.89620 0.87509 0.75309 0.75838 0.85469 0.84085 0.83887 0.84223 0.86170 0.92028 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 0.99 44.58 29.55 68.60 2.03 46.61 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.77 9.50 67.95 0.65 -31.13 16 8 H 0.07 4.12 7.80 -2.91 -0.02 4.09 16 9 S -0.20 -10.88 21.44 -56.49 -1.21 -12.09 16 10 C -0.09 -3.60 5.67 71.98 0.41 -3.19 16 11 C -0.08 -2.62 5.33 30.59 0.16 -2.46 16 12 C 0.06 1.69 4.83 86.30 0.42 2.11 16 13 N -0.52 -13.42 5.34 -881.49 -4.70 -18.12 16 14 C 0.03 0.50 5.91 86.45 0.51 1.01 16 15 C -0.10 -1.51 5.64 31.49 0.18 -1.34 16 16 C -0.04 -0.64 0.73 -52.78 -0.04 -0.68 16 17 C 0.54 11.14 5.14 87.66 0.45 11.59 16 18 N -0.84 -9.48 7.47 -173.54 -1.30 -10.77 16 19 O -0.58 -17.88 16.26 -3.03 -0.05 -17.93 16 20 C -0.08 -1.15 4.74 -19.86 -0.09 -1.25 16 21 C -0.11 -1.54 8.03 22.27 0.18 -1.36 16 22 C -0.12 -1.34 10.05 22.27 0.22 -1.12 16 23 C -0.12 -1.25 10.05 22.27 0.22 -1.02 16 24 C -0.12 -1.36 10.05 22.27 0.22 -1.14 16 25 C -0.13 -1.82 8.96 22.27 0.20 -1.62 16 26 C 0.05 1.25 5.34 86.45 0.46 1.71 16 27 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 28 H 0.06 2.61 8.14 -2.40 -0.02 2.59 16 29 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.24 7.47 -2.39 -0.02 2.22 16 32 H 0.05 1.26 7.77 -2.39 -0.02 1.24 16 33 H 0.07 2.01 8.08 -2.39 -0.02 1.99 16 34 H 0.08 1.76 7.85 -2.39 -0.02 1.74 16 35 H 0.06 1.06 7.75 -2.39 -0.02 1.04 16 36 H 0.09 1.15 7.35 -2.39 -0.02 1.13 16 37 H 0.11 1.07 7.20 -2.39 -0.02 1.05 16 38 H 0.42 2.41 8.38 -92.71 -0.78 1.63 16 39 H 0.41 3.76 8.93 -92.70 -0.83 2.93 16 40 H 0.13 1.57 7.86 -2.91 -0.02 1.55 16 41 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 42 H 0.14 0.82 8.06 -2.91 -0.02 0.79 16 43 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 44 H 0.12 1.72 5.94 -2.91 -0.02 1.71 16 45 H 0.06 1.30 7.01 -2.39 -0.02 1.29 16 46 H 0.08 2.20 6.79 -2.39 -0.02 2.18 16 Total: -1.00 -77.25 383.15 -0.94 -78.19 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.61 Total: 18.19 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 4.62 Total: -28.62 kcal Atomic # 7 Polarization: -78.62 SS G_CDS: -5.72 Total: -84.34 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.05 Total: -17.93 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -10.88 SS G_CDS: -1.21 Total: -12.09 kcal Total: -77.25 -0.94 -78.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411963411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.022 kcal (2) G-P(sol) polarization free energy of solvation -77.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds