Wall clock time and date at job start Tue Mar 31 2020 17:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35501 * 117.00014 * 2 1 4 4 N 1.32190 * 119.72729 * 359.73089 * 3 2 1 5 5 C 1.31864 * 121.87961 * 179.74929 * 4 3 2 6 6 C 1.38930 * 121.08810 * 0.52753 * 5 4 3 7 7 N 1.40209 * 120.33737 * 179.76994 * 6 5 4 8 8 C 1.34786 * 119.99972 * 332.68976 * 7 6 5 9 9 O 1.21592 * 120.00076 * 5.59903 * 8 7 6 10 10 N 1.34773 * 119.99848 * 185.60070 * 8 7 6 11 11 C 1.46501 * 119.99573 * 185.57135 * 10 8 7 12 12 C 1.53004 * 109.47011 * 175.68540 * 11 10 8 13 13 C 1.50700 * 115.54875 * 69.47889 * 12 11 10 14 14 H 1.08003 * 120.00334 * 264.06988 * 13 12 11 15 15 C 1.37873 * 120.00082 * 84.07228 * 13 12 11 16 16 N 1.31514 * 120.00314 * 176.04728 * 15 13 12 17 17 Si 1.86800 * 119.99927 * 356.04690 * 15 13 12 18 18 H 1.48509 * 109.46884 * 89.57033 * 17 15 13 19 19 H 1.48499 * 109.47267 * 209.56922 * 17 15 13 20 20 H 1.48501 * 109.47137 * 329.57347 * 17 15 13 21 21 C 1.53002 * 117.49833 * 283.81562 * 12 11 10 22 22 C 1.52995 * 117.50082 * 215.15225 * 12 11 10 23 23 C 1.38893 * 119.31994 * 359.73933 * 6 5 4 24 24 C 1.39958 * 118.28860 * 0.02562 * 23 6 5 25 25 C 1.47527 * 120.56542 * 179.97438 * 24 23 6 26 26 N 1.34784 * 119.99772 * 0.02562 * 25 24 23 27 27 O 1.21585 * 120.00522 * 180.02562 * 25 24 23 28 28 H 1.08994 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46714 * 299.99744 * 1 2 3 30 30 H 1.08998 * 109.47090 * 59.99505 * 1 2 3 31 31 H 1.07998 * 119.44930 * 180.27119 * 5 4 3 32 32 H 0.96995 * 120.00203 * 152.69715 * 7 6 5 33 33 H 0.97002 * 120.00419 * 5.56358 * 10 8 7 34 34 H 1.08998 * 109.47133 * 295.67750 * 11 10 8 35 35 H 1.08995 * 109.47630 * 55.68906 * 11 10 8 36 36 H 0.97005 * 120.00314 * 179.97438 * 16 15 13 37 37 H 1.08997 * 117.49910 * 359.97438 * 21 12 11 38 38 H 1.09003 * 117.50155 * 145.02131 * 21 12 11 39 39 H 1.08998 * 117.50048 * 214.98117 * 22 12 11 40 40 H 1.09000 * 117.50088 * 359.97438 * 22 12 11 41 41 H 1.08000 * 120.85274 * 180.02562 * 23 6 5 42 42 H 0.96994 * 119.99986 * 0.02562 * 26 25 24 43 43 H 0.96999 * 119.99986 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3190 2.3125 -0.0054 5 6 1.8731 3.5091 -0.0007 6 6 3.2541 3.6601 -0.0008 7 7 3.8266 4.9401 -0.0007 8 6 3.1549 5.9788 -0.5360 9 8 2.0133 5.8282 -0.9267 10 7 3.7486 7.1844 -0.6384 11 6 2.9812 8.3413 -1.1061 12 6 3.8524 9.5967 -1.0276 13 6 4.9917 9.6597 -2.0120 14 1 5.9809 9.3447 -1.7141 15 6 4.7713 10.1195 -3.2930 16 7 5.7792 10.2480 -4.1281 17 14 3.0412 10.5599 -3.8425 18 1 2.7746 11.9892 -3.5402 19 1 2.9126 10.3308 -5.3041 20 1 2.0609 9.7100 -3.1200 21 6 4.0772 10.2154 0.3535 22 6 3.1643 10.9123 -0.6584 23 6 4.0619 2.5303 -0.0004 24 6 3.4451 1.2739 -0.0004 25 6 4.2547 0.0407 -0.0006 26 7 5.6004 0.1180 -0.0001 27 8 3.7082 -1.0454 -0.0011 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.2428 4.3861 -0.0010 32 1 4.7060 5.0780 0.3846 33 1 4.6839 7.2860 -0.4023 34 1 2.6710 8.1784 -2.1382 35 1 2.1000 8.4710 -0.4779 36 1 5.6241 10.5711 -5.0295 37 1 3.6041 9.7284 1.2062 38 1 5.0490 10.6684 0.5500 39 1 3.5357 11.8235 -1.1273 40 1 2.0907 10.8837 -0.4718 41 1 5.1383 2.6189 0.0000 42 1 6.0364 0.9844 0.0007 43 1 6.1327 -0.6929 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000432282553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:10 Heat of formation + Delta-G solvation = -26.244869 kcal Electronic energy + Delta-G solvation = -28093.698638 eV Core-core repulsion = 23947.992409 eV Total energy + Delta-G solvation = -4145.706229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32218 -40.06416 -38.97990 -38.06553 -37.18384 -34.89467 -34.11673 -33.75869 -32.23402 -32.20942 -29.80855 -27.40003 -26.62105 -25.33918 -24.97711 -23.01720 -21.93716 -21.56986 -20.57297 -19.48755 -18.81447 -18.52738 -18.15937 -17.26474 -16.72339 -16.34017 -16.20096 -16.07218 -15.46084 -14.96555 -14.93686 -14.73205 -14.64761 -14.30945 -14.17350 -13.66350 -13.57599 -13.26240 -13.23602 -12.91162 -12.56766 -12.30247 -11.94073 -11.57896 -11.22797 -10.80796 -10.69885 -10.64385 -10.52278 -10.27734 -10.15359 -9.94258 -9.88091 -9.76267 -9.63241 -9.31794 -8.77481 -8.70499 -8.56289 -7.97641 -6.24726 -4.30133 0.45867 0.99153 2.55306 2.70828 2.95674 3.21711 3.22636 3.24058 3.33694 3.37143 3.68182 4.20481 4.23557 4.32102 4.41081 4.57024 4.71517 4.85762 5.03805 5.13612 5.19182 5.22153 5.23805 5.50265 5.54782 5.68188 5.90997 5.92101 5.96801 6.10849 6.30289 6.34047 6.48048 6.52357 6.60888 6.84679 6.88068 6.98131 7.00040 7.03101 7.12580 7.58056 7.63121 8.04548 8.12196 8.30875 8.64478 8.74672 9.38242 10.86384 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.002516 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.828348 B =11124.017160 C =11550.397613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.276 6.276 3 C 0.348 3.652 4 N -0.523 5.523 5 C 0.163 3.837 6 C 0.084 3.916 7 N -0.681 5.681 8 C 0.700 3.300 9 O -0.584 6.584 10 N -0.709 5.709 11 C 0.169 3.831 12 C -0.018 4.018 13 C -0.494 4.494 14 H 0.078 0.922 15 C 0.082 3.918 16 N -0.894 5.894 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.255 1.255 21 C -0.177 4.177 22 C -0.190 4.190 23 C -0.048 4.048 24 C -0.199 4.199 25 C 0.573 3.427 26 N -0.854 5.854 27 O -0.520 6.520 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.197 0.803 32 H 0.410 0.590 33 H 0.404 0.596 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.266 0.734 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.147 0.853 42 H 0.399 0.601 43 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 -14.940 11.105 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.180 6.180 3 C 0.167 3.833 4 N -0.246 5.246 5 C 0.003 3.997 6 C -0.015 4.015 7 N -0.329 5.329 8 C 0.400 3.600 9 O -0.463 6.463 10 N -0.361 5.361 11 C 0.045 3.955 12 C -0.019 4.019 13 C -0.531 4.531 14 H 0.096 0.904 15 C -0.122 4.122 16 N -0.530 5.530 17 Si 0.703 3.297 18 H -0.202 1.202 19 H -0.219 1.219 20 H -0.179 1.179 21 C -0.214 4.214 22 C -0.228 4.228 23 C -0.077 4.077 24 C -0.206 4.206 25 C 0.358 3.642 26 N -0.419 5.419 27 O -0.396 6.396 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.213 0.787 32 H 0.245 0.755 33 H 0.238 0.762 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.165 0.835 42 H 0.228 0.772 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.414 -15.886 10.512 19.554 hybrid contribution 1.277 0.918 -0.257 1.594 sum -3.137 -14.968 10.255 18.413 Atomic orbital electron populations 1.22941 0.77599 1.03044 1.02503 1.86486 1.22270 1.23029 1.86217 1.19879 0.88077 0.85405 0.89914 1.67689 1.39486 0.98175 1.19291 1.23633 0.92156 0.94607 0.89262 1.18299 0.93458 0.84447 1.05282 1.42512 1.22283 1.05353 1.62734 1.15989 0.84739 0.80530 0.78741 1.90803 1.17320 1.82783 1.55420 1.45075 1.15104 1.06805 1.69089 1.21255 0.92018 0.83212 0.98978 1.19607 0.97656 0.89094 0.95528 1.20170 0.93747 1.44748 0.94434 0.90447 1.24957 0.96830 0.94076 0.96344 1.69881 1.30960 1.45445 1.06698 0.86920 0.85629 0.79505 0.77642 1.20224 1.21874 1.17910 1.22812 1.00461 1.05524 0.92640 1.22982 0.96569 0.98207 1.05015 1.21233 1.00065 0.89549 0.96893 1.19602 0.91487 0.93813 1.15658 1.17741 0.82208 0.88318 0.75931 1.43712 1.06850 1.12502 1.78879 1.90872 1.71568 1.28611 1.48534 0.88553 0.92242 0.92161 0.78681 0.75473 0.76160 0.91309 0.93451 0.92378 0.90864 0.89391 0.89050 0.90714 0.83535 0.77202 0.76377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.38 101.05 1.05 1.41 16 2 O -0.28 -3.86 8.57 -40.02 -0.34 -4.20 16 3 C 0.35 4.82 7.51 -16.64 -0.12 4.70 16 4 N -0.52 -7.35 9.19 -12.84 -0.12 -7.47 16 5 C 0.16 2.26 9.96 -17.28 -0.17 2.09 16 6 C 0.08 0.98 6.45 -83.53 -0.54 0.44 16 7 N -0.68 -7.56 5.38 -14.13 -0.08 -7.64 16 8 C 0.70 10.78 8.45 -86.91 -0.73 10.05 16 9 O -0.58 -10.90 13.34 5.28 0.07 -10.83 16 10 N -0.71 -11.28 5.53 -65.22 -0.36 -11.64 16 11 C 0.17 3.22 5.01 -4.04 -0.02 3.20 16 12 C -0.02 -0.35 0.80 -155.66 -0.12 -0.48 16 13 C -0.49 -12.19 9.35 -34.44 -0.32 -12.51 16 14 H 0.08 2.06 8.06 -52.48 -0.42 1.64 16 15 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 16 N -0.89 -25.48 13.96 55.43 0.77 -24.70 16 17 Si 0.88 20.43 25.21 -169.99 -4.29 16.14 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.25 -5.66 5.47 56.52 0.31 -5.35 16 21 C -0.18 -3.08 9.96 -26.69 -0.27 -3.34 16 22 C -0.19 -3.60 7.81 -26.69 -0.21 -3.81 16 23 C -0.05 -0.46 9.55 -38.70 -0.37 -0.82 16 24 C -0.20 -2.36 5.90 -104.71 -0.62 -2.98 16 25 C 0.57 6.69 8.04 -12.47 -0.10 6.59 16 26 N -0.85 -5.82 8.83 30.46 0.27 -5.55 16 27 O -0.52 -8.10 16.02 -16.53 -0.26 -8.37 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.20 2.96 5.58 -52.49 -0.29 2.66 16 32 H 0.41 3.08 8.83 -40.82 -0.36 2.72 16 33 H 0.40 5.72 8.50 -40.82 -0.35 5.37 16 34 H 0.07 1.50 6.16 -51.93 -0.32 1.18 16 35 H 0.05 0.86 8.06 -51.93 -0.42 0.45 16 36 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.09 1.84 7.68 -51.93 -0.40 1.44 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.15 0.77 6.51 -52.49 -0.34 0.43 16 42 H 0.40 1.58 6.93 -40.82 -0.28 1.30 16 43 H 0.41 2.21 8.93 -40.82 -0.36 1.85 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -33.97 362.65 -6.83 -40.79 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -5.31 Total: 11.41 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -2.65 Total: 6.59 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.49 Total: -57.00 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.54 Total: -23.39 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.29 Total: 16.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.97 -6.83 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432282553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.548 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds