Wall clock time and date at job start Tue Mar 31 2020 17:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35501 * 117.00014 * 2 1 4 4 N 1.32190 * 119.72729 * 359.73089 * 3 2 1 5 5 C 1.31864 * 121.87961 * 179.74929 * 4 3 2 6 6 C 1.38930 * 121.08810 * 0.52753 * 5 4 3 7 7 N 1.40209 * 120.33737 * 179.76994 * 6 5 4 8 8 C 1.34786 * 119.99972 * 332.68976 * 7 6 5 9 9 O 1.21592 * 120.00076 * 5.59903 * 8 7 6 10 10 N 1.34773 * 119.99848 * 185.60070 * 8 7 6 11 11 C 1.46501 * 119.99573 * 185.57135 * 10 8 7 12 12 C 1.53004 * 109.47011 * 175.68540 * 11 10 8 13 13 C 1.50700 * 115.54875 * 69.47889 * 12 11 10 14 14 H 1.08003 * 120.00334 * 264.06988 * 13 12 11 15 15 C 1.37873 * 120.00082 * 84.07228 * 13 12 11 16 16 N 1.31514 * 120.00314 * 176.04728 * 15 13 12 17 17 Si 1.86800 * 119.99927 * 356.04690 * 15 13 12 18 18 H 1.48509 * 109.46884 * 89.57033 * 17 15 13 19 19 H 1.48499 * 109.47267 * 209.56922 * 17 15 13 20 20 H 1.48501 * 109.47137 * 329.57347 * 17 15 13 21 21 C 1.53002 * 117.49833 * 283.81562 * 12 11 10 22 22 C 1.52995 * 117.50082 * 215.15225 * 12 11 10 23 23 C 1.38893 * 119.31994 * 359.73933 * 6 5 4 24 24 C 1.39958 * 118.28860 * 0.02562 * 23 6 5 25 25 C 1.47527 * 120.56542 * 179.97438 * 24 23 6 26 26 N 1.34784 * 119.99772 * 0.02562 * 25 24 23 27 27 O 1.21585 * 120.00522 * 180.02562 * 25 24 23 28 28 H 1.08994 * 109.47097 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46714 * 299.99744 * 1 2 3 30 30 H 1.08998 * 109.47090 * 59.99505 * 1 2 3 31 31 H 1.07998 * 119.44930 * 180.27119 * 5 4 3 32 32 H 0.96995 * 120.00203 * 152.69715 * 7 6 5 33 33 H 0.97002 * 120.00419 * 5.56358 * 10 8 7 34 34 H 1.08998 * 109.47133 * 295.67750 * 11 10 8 35 35 H 1.08995 * 109.47630 * 55.68906 * 11 10 8 36 36 H 0.97005 * 120.00314 * 179.97438 * 16 15 13 37 37 H 1.08997 * 117.49910 * 359.97438 * 21 12 11 38 38 H 1.09003 * 117.50155 * 145.02131 * 21 12 11 39 39 H 1.08998 * 117.50048 * 214.98117 * 22 12 11 40 40 H 1.09000 * 117.50088 * 359.97438 * 22 12 11 41 41 H 1.08000 * 120.85274 * 180.02562 * 23 6 5 42 42 H 0.96994 * 119.99986 * 0.02562 * 26 25 24 43 43 H 0.96999 * 119.99986 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 7 1.3190 2.3125 -0.0054 5 6 1.8731 3.5091 -0.0007 6 6 3.2541 3.6601 -0.0008 7 7 3.8266 4.9401 -0.0007 8 6 3.1549 5.9788 -0.5360 9 8 2.0133 5.8282 -0.9267 10 7 3.7486 7.1844 -0.6384 11 6 2.9812 8.3413 -1.1061 12 6 3.8524 9.5967 -1.0276 13 6 4.9917 9.6597 -2.0120 14 1 5.9809 9.3447 -1.7141 15 6 4.7713 10.1195 -3.2930 16 7 5.7792 10.2480 -4.1281 17 14 3.0412 10.5599 -3.8425 18 1 2.7746 11.9892 -3.5402 19 1 2.9126 10.3308 -5.3041 20 1 2.0609 9.7100 -3.1200 21 6 4.0772 10.2154 0.3535 22 6 3.1643 10.9123 -0.6584 23 6 4.0619 2.5303 -0.0004 24 6 3.4451 1.2739 -0.0004 25 6 4.2547 0.0407 -0.0006 26 7 5.6004 0.1180 -0.0001 27 8 3.7082 -1.0454 -0.0011 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.2428 4.3861 -0.0010 32 1 4.7060 5.0780 0.3846 33 1 4.6839 7.2860 -0.4023 34 1 2.6710 8.1784 -2.1382 35 1 2.1000 8.4710 -0.4779 36 1 5.6241 10.5711 -5.0295 37 1 3.6041 9.7284 1.2062 38 1 5.0490 10.6684 0.5500 39 1 3.5357 11.8235 -1.1273 40 1 2.0907 10.8837 -0.4718 41 1 5.1383 2.6189 0.0000 42 1 6.0364 0.9844 0.0007 43 1 6.1327 -0.6929 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000432282553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:09 Heat of formation + Delta-G solvation = -55.540876 kcal Electronic energy + Delta-G solvation = -28094.969008 eV Core-core repulsion = 23947.992409 eV Total energy + Delta-G solvation = -4146.976600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.30743 -41.18975 -39.90872 -39.20677 -38.56275 -35.97955 -35.11065 -34.96963 -34.18778 -33.08513 -30.81764 -28.53382 -27.98254 -26.92065 -26.01438 -23.96603 -23.31450 -22.69082 -21.62767 -21.05820 -19.76085 -19.62181 -19.21473 -18.27928 -18.20667 -17.32182 -17.21282 -17.12400 -16.95763 -16.37837 -16.05525 -15.80434 -15.63527 -15.58122 -15.12610 -14.99640 -14.74271 -14.57923 -14.35025 -14.20827 -14.11260 -13.82132 -13.06613 -12.76633 -12.64455 -12.49639 -12.15166 -11.93327 -11.71291 -11.61046 -11.49400 -11.34593 -10.94037 -10.88880 -10.68319 -10.66567 -10.58790 -10.34412 -9.95094 -8.98127 -8.27995 -6.33654 -0.47035 0.05178 1.36741 1.41906 1.46567 1.52672 1.75730 2.04654 2.10843 2.38634 2.45536 2.71970 3.01281 3.09644 3.27046 3.41388 3.62476 3.77645 3.82413 4.05915 4.26297 4.36408 4.40254 4.41744 4.43534 4.47286 4.56340 4.70030 4.78536 4.85494 4.93151 4.94223 5.15526 5.35164 5.49546 5.52558 5.58576 5.72913 5.89931 5.94493 6.13864 6.31025 6.39706 6.66110 6.75352 7.02282 7.31617 7.37275 7.46335 8.86358 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018239 B = 0.002516 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.828348 B =11124.017160 C =11550.397613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.295 6.295 3 C 0.328 3.672 4 N -0.538 5.538 5 C 0.145 3.855 6 C 0.078 3.922 7 N -0.658 5.658 8 C 0.700 3.300 9 O -0.618 6.618 10 N -0.706 5.706 11 C 0.180 3.820 12 C -0.039 4.039 13 C -0.477 4.477 14 H 0.049 0.951 15 C 0.028 3.972 16 N -0.944 5.944 17 Si 0.922 3.078 18 H -0.268 1.268 19 H -0.305 1.305 20 H -0.237 1.237 21 C -0.148 4.148 22 C -0.194 4.194 23 C -0.019 4.019 24 C -0.204 4.204 25 C 0.572 3.428 26 N -0.827 5.827 27 O -0.566 6.566 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.179 0.821 32 H 0.430 0.570 33 H 0.413 0.587 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.263 0.737 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.197 0.803 42 H 0.416 0.584 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -15.380 12.982 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.200 6.200 3 C 0.148 3.852 4 N -0.262 5.262 5 C -0.015 4.015 6 C -0.021 4.021 7 N -0.308 5.308 8 C 0.400 3.600 9 O -0.499 6.499 10 N -0.359 5.359 11 C 0.055 3.945 12 C -0.040 4.040 13 C -0.514 4.514 14 H 0.067 0.933 15 C -0.170 4.170 16 N -0.584 5.584 17 Si 0.748 3.252 18 H -0.194 1.194 19 H -0.233 1.233 20 H -0.160 1.160 21 C -0.185 4.185 22 C -0.232 4.232 23 C -0.047 4.047 24 C -0.211 4.211 25 C 0.357 3.643 26 N -0.393 5.393 27 O -0.446 6.446 28 H 0.138 0.862 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.196 0.804 32 H 0.270 0.730 33 H 0.249 0.751 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.214 0.786 42 H 0.248 0.752 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.826 -16.315 12.445 20.873 hybrid contribution 1.197 0.990 -0.769 1.733 sum -2.630 -15.325 11.676 19.445 Atomic orbital electron populations 1.23113 0.76310 1.04562 1.02361 1.86473 1.23767 1.23406 1.86353 1.20227 0.89144 0.85277 0.90594 1.67587 1.40166 0.98390 1.20020 1.23445 0.93268 0.94067 0.90671 1.18287 0.92947 0.85098 1.05757 1.42153 1.22707 1.04141 1.61780 1.16061 0.84407 0.80943 0.78576 1.90805 1.18980 1.83356 1.56766 1.44874 1.15357 1.06453 1.69246 1.20898 0.92447 0.83468 0.97667 1.19426 0.97309 0.90509 0.96770 1.20390 0.94084 1.42092 0.94876 0.93326 1.25653 0.99601 0.94865 0.96892 1.70011 1.32935 1.48343 1.07125 0.86165 0.82600 0.79908 0.76547 1.19352 1.23292 1.15987 1.22845 1.00198 1.03395 0.92021 1.23044 0.98210 0.96553 1.05365 1.21605 1.02094 0.87459 0.93565 1.19824 0.90978 0.94963 1.15356 1.17757 0.83445 0.87420 0.75707 1.43481 1.05177 1.14105 1.76534 1.90855 1.72726 1.29984 1.50995 0.86248 0.92035 0.92614 0.80414 0.73002 0.75110 0.94409 0.92088 0.92782 0.87637 0.89649 0.90603 0.88361 0.78627 0.75153 0.75175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.38 113.37 1.18 1.83 16 2 O -0.29 -8.32 8.57 -67.16 -0.58 -8.90 16 3 C 0.33 9.01 7.51 85.13 0.64 9.65 16 4 N -0.54 -15.20 9.19 -307.54 -2.83 -18.03 16 5 C 0.14 3.95 9.96 84.85 0.84 4.79 16 6 C 0.08 1.65 6.45 38.12 0.25 1.89 16 7 N -0.66 -12.78 5.38 -316.88 -1.71 -14.49 16 8 C 0.70 20.28 8.45 179.05 1.51 21.79 16 9 O -0.62 -22.60 13.34 -4.01 -0.05 -22.66 16 10 N -0.71 -21.01 5.53 -478.53 -2.64 -23.65 16 11 C 0.18 6.50 5.01 86.38 0.43 6.93 16 12 C -0.04 -1.49 0.80 -52.93 -0.04 -1.53 16 13 C -0.48 -23.45 9.35 25.60 0.24 -23.21 16 14 H 0.05 2.62 8.06 -2.91 -0.02 2.59 16 15 C 0.03 1.50 5.47 84.65 0.46 1.96 16 16 N -0.94 -55.29 13.96 21.45 0.30 -54.99 16 17 Si 0.92 42.10 25.21 68.60 1.73 43.83 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.24 -10.03 5.47 99.48 0.54 -9.49 16 21 C -0.15 -4.63 9.96 30.62 0.30 -4.32 16 22 C -0.19 -6.81 7.81 30.62 0.24 -6.58 16 23 C -0.02 -0.29 9.55 22.84 0.22 -0.07 16 24 C -0.20 -4.47 5.90 -19.92 -0.12 -4.58 16 25 C 0.57 12.21 8.04 86.69 0.70 12.91 16 26 N -0.83 -8.45 8.83 -175.82 -1.55 -10.00 16 27 O -0.57 -17.26 16.02 16.88 0.27 -16.99 16 28 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.22 8.11 -2.39 -0.02 1.20 16 30 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 31 H 0.18 5.49 5.58 -2.91 -0.02 5.47 16 32 H 0.43 4.76 8.83 -92.71 -0.82 3.94 16 33 H 0.41 10.69 8.50 -92.71 -0.79 9.90 16 34 H 0.04 1.60 6.16 -2.39 -0.01 1.59 16 35 H 0.06 2.05 8.06 -2.39 -0.02 2.03 16 36 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 37 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.08 2.91 7.68 -2.39 -0.02 2.89 16 40 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.20 0.93 6.51 -2.91 -0.02 0.91 16 42 H 0.42 1.33 6.93 -92.71 -0.64 0.69 16 43 H 0.42 3.21 8.93 -92.71 -0.83 2.39 16 Total: -1.00 -77.47 362.65 -2.32 -79.79 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -2.12 Total: 24.61 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 6.85 Total: 21.46 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -8.43 Total: -121.16 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -0.36 Total: -48.54 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.73 Total: 43.83 kcal Total: -77.47 -2.32 -79.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000432282553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.248 kcal (2) G-P(sol) polarization free energy of solvation -77.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds