Wall clock time and date at job start Tue Mar 31 2020 17:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00043 * 2 1 4 4 H 1.09002 * 109.86632 * 359.55393 * 3 2 1 5 5 O 1.43740 * 109.87824 * 238.54549 * 3 2 1 6 6 C 1.44381 * 106.97352 * 214.05970 * 5 3 2 7 7 C 1.54998 * 103.48999 * 40.06571 * 6 5 3 8 8 C 1.54100 * 109.87513 * 120.71345 * 3 2 1 9 9 H 1.08995 * 110.49369 * 2.77749 * 8 3 2 10 10 N 1.46498 * 110.48927 * 240.12900 * 8 3 2 11 11 S 1.65601 * 120.00066 * 118.10418 * 10 8 3 12 12 O 1.42098 * 106.40532 * 176.07322 * 11 10 8 13 13 O 1.42108 * 106.40066 * 308.98842 * 11 10 8 14 14 N 1.65594 * 107.21780 * 62.52498 * 11 10 8 15 15 C 1.46497 * 120.00323 * 276.27718 * 14 11 10 16 16 C 1.50699 * 109.47158 * 95.00142 * 15 14 11 17 17 H 1.08009 * 119.99830 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00349 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99985 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00331 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46947 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47012 * 119.99925 * 20 18 16 23 23 H 1.48500 * 109.47556 * 240.00195 * 20 18 16 24 24 C 1.46510 * 119.99798 * 96.28090 * 14 11 10 25 25 C 1.52994 * 109.47172 * 94.79934 * 24 14 11 26 26 O 1.42900 * 109.47382 * 64.80085 * 25 24 14 27 27 C 1.42896 * 114.00339 * 179.97438 * 26 25 24 28 28 H 1.08003 * 120.00244 * 179.97438 * 1 2 3 29 29 H 1.08006 * 120.00207 * 359.72183 * 1 2 3 30 30 H 1.07999 * 120.00281 * 180.02562 * 2 1 3 31 31 H 1.08996 * 110.61575 * 158.56426 * 6 5 3 32 32 H 1.09001 * 110.62031 * 281.40391 * 6 5 3 33 33 H 1.08995 * 110.90802 * 81.17112 * 7 6 5 34 34 H 1.08996 * 110.90496 * 204.74189 * 7 6 5 35 35 H 0.96999 * 120.00340 * 298.10832 * 10 8 3 36 36 H 1.08998 * 109.47096 * 214.99650 * 15 14 11 37 37 H 1.08997 * 109.47482 * 335.00074 * 15 14 11 38 38 H 0.96996 * 120.00131 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.47102 * 214.79959 * 24 14 11 40 40 H 1.08997 * 109.46850 * 334.79848 * 24 14 11 41 41 H 1.08997 * 109.47416 * 184.79987 * 25 24 14 42 42 H 1.09003 * 109.47161 * 304.79840 * 25 24 14 43 43 H 1.09005 * 109.47304 * 59.99426 * 27 26 25 44 44 H 1.08999 * 109.47331 * 179.97438 * 27 26 25 45 45 H 1.09002 * 109.47086 * 299.99968 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3609 2.1385 -0.0080 5 8 2.9187 1.3757 -1.1531 6 6 4.1030 2.0997 -0.7558 7 6 4.3926 1.5649 0.6698 8 6 2.9665 1.3887 1.2459 9 1 2.9007 0.4691 1.8273 10 7 2.5995 2.5441 2.0686 11 16 2.0580 2.3193 3.6173 12 8 1.8779 3.6153 4.1715 13 8 1.0172 1.3546 3.5424 14 7 3.2897 1.6131 4.4696 15 6 3.4796 0.1615 4.4155 16 6 4.5011 -0.1725 3.3591 17 1 4.9630 0.6177 2.7856 18 6 4.8461 -1.4866 3.1246 19 7 4.2841 -2.4487 3.8233 20 14 6.1117 -1.9006 1.8146 21 1 6.5908 -0.6484 1.1759 22 1 7.2586 -2.6068 2.4400 23 1 5.4925 -2.7755 0.7868 24 6 4.1894 2.4400 5.2778 25 6 3.6908 2.4727 6.7239 26 8 3.7704 1.1608 7.2850 27 6 3.3264 1.0806 8.6408 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5401 0.9353 0.0045 30 1 1.8500 -0.9353 -0.0004 31 1 4.9329 1.8753 -1.4259 32 1 3.9082 3.1720 -0.7340 33 1 4.9159 0.6097 0.6281 34 1 4.9601 2.2922 1.2503 35 1 2.6737 3.4407 1.7061 36 1 3.8289 -0.1956 5.3843 37 1 2.5329 -0.3200 4.1706 38 1 4.5265 -3.3732 3.6581 39 1 5.1941 2.0183 5.2493 40 1 4.2092 3.4535 4.8773 41 1 4.3098 3.1550 7.3063 42 1 2.6559 2.8142 6.7437 43 1 2.2839 1.3935 8.7009 44 1 3.4179 0.0532 8.9930 45 1 3.9382 1.7341 9.2627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451862570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:53 Heat of formation + Delta-G solvation = -138.684516 kcal Electronic energy + Delta-G solvation = -29710.059006 eV Core-core repulsion = 25662.628227 eV Total energy + Delta-G solvation = -4047.430778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.47044 -37.74428 -36.66273 -35.41532 -35.22543 -34.41721 -33.43519 -32.61745 -30.03178 -29.51816 -27.35547 -26.77209 -25.67133 -22.97308 -22.56417 -21.78928 -21.14251 -19.89111 -18.80584 -17.31136 -17.13395 -16.50587 -16.33568 -15.95504 -15.78189 -15.64442 -15.05115 -14.87018 -14.65192 -14.45263 -14.05762 -13.75822 -13.50984 -12.87417 -12.69328 -12.54737 -12.28218 -12.06573 -11.92817 -11.90414 -11.68643 -11.51921 -11.41081 -11.23217 -11.17978 -11.10690 -10.94897 -10.73403 -10.61758 -10.48316 -10.31893 -10.07786 -9.75065 -9.56489 -9.44058 -9.29492 -8.78936 -8.49155 -8.04257 -6.11633 -4.17306 1.25150 2.54760 3.21271 3.27203 3.31509 3.47509 4.09112 4.16765 4.30994 4.33546 4.88997 4.95234 5.14494 5.19017 5.25689 5.32006 5.35736 5.41595 5.45414 5.54592 5.61426 5.65245 5.67950 5.75860 5.78191 5.79541 5.93153 5.94615 6.12156 6.21337 6.30238 6.43476 6.50998 6.70284 6.93439 7.00711 7.11651 7.30807 7.47626 7.53681 7.55835 7.74352 7.88549 8.17429 8.88226 9.46678 10.95871 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.006450 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.510348 B = 4339.812591 C = 5745.854200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.145 4.145 3 C 0.094 3.906 4 H 0.073 0.927 5 O -0.371 6.371 6 C 0.041 3.959 7 C -0.157 4.157 8 C 0.127 3.873 9 H 0.145 0.855 10 N -1.120 6.120 11 S 2.781 3.219 12 O -1.005 7.005 13 O -0.975 6.975 14 N -0.984 5.984 15 C 0.242 3.758 16 C -0.546 4.546 17 H 0.070 0.930 18 C 0.069 3.931 19 N -0.882 5.882 20 Si 0.879 3.121 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.281 1.281 24 C 0.136 3.864 25 C 0.044 3.956 26 O -0.369 6.369 27 C 0.031 3.969 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.404 0.596 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.083 0.917 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 9.502 -1.392 9.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C 0.034 3.966 4 H 0.090 0.910 5 O -0.290 6.290 6 C -0.035 4.035 7 C -0.196 4.196 8 C 0.019 3.981 9 H 0.162 0.838 10 N -0.876 5.876 11 S 2.789 3.211 12 O -0.989 6.989 13 O -0.958 6.958 14 N -0.825 5.825 15 C 0.120 3.880 16 C -0.586 4.586 17 H 0.088 0.912 18 C -0.135 4.135 19 N -0.519 5.519 20 Si 0.707 3.293 21 H -0.192 1.192 22 H -0.211 1.211 23 H -0.207 1.207 24 C 0.009 3.991 25 C -0.035 4.035 26 O -0.287 6.287 27 C -0.066 4.066 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.236 0.764 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.376 9.074 -1.259 9.264 hybrid contribution 1.181 0.245 -0.514 1.311 sum -0.195 9.319 -1.773 9.488 Atomic orbital electron populations 1.23749 0.95666 1.01764 0.99897 1.22803 0.95810 0.97721 1.00023 1.22324 0.92420 0.96067 0.85748 0.90959 1.88899 1.30606 1.76551 1.32944 1.23610 0.88143 0.95541 0.96251 1.23540 0.97238 1.03598 0.95266 1.22387 0.92324 0.90558 0.92799 0.83790 1.56125 1.84794 1.13842 1.32878 1.01908 0.74152 0.72433 0.72593 1.93532 1.86462 1.41354 1.77553 1.93601 1.53601 1.62359 1.86221 1.57593 1.47926 1.18089 1.58932 1.19331 0.97654 0.71721 0.99318 1.21783 1.24125 0.92473 1.20188 0.91167 1.24903 0.96064 0.96386 0.96140 1.69950 1.42166 1.00016 1.39810 0.86779 0.81794 0.78787 0.81927 1.19233 1.21067 1.20729 1.21081 0.95743 0.94452 0.87857 1.23092 0.99981 0.84942 0.95498 1.88102 1.86052 1.28579 1.25950 1.22704 0.97787 1.02230 0.83906 0.88008 0.88848 0.86351 0.89271 0.92646 0.88730 0.89496 0.76367 0.92392 0.93733 0.92684 0.89090 0.90056 0.93113 0.93559 0.94628 0.89823 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 14.32 29.02 0.42 -2.27 16 2 C -0.15 -2.50 8.94 -36.02 -0.32 -2.82 16 3 C 0.09 1.56 3.59 -27.31 -0.10 1.46 16 4 H 0.07 1.12 7.60 -51.93 -0.39 0.73 16 5 O -0.37 -6.11 11.17 -35.23 -0.39 -6.50 16 6 C 0.04 0.57 7.72 38.21 0.29 0.86 16 7 C -0.16 -2.49 5.11 -24.72 -0.13 -2.61 16 8 C 0.13 2.21 2.62 -66.40 -0.17 2.04 16 9 H 0.14 3.00 4.84 -51.93 -0.25 2.75 16 10 N -1.12 -17.95 5.38 -3.59 -0.02 -17.97 16 11 S 2.78 53.18 5.95 -107.50 -0.64 52.54 16 12 O -1.00 -19.49 16.91 -57.17 -0.97 -20.46 16 13 O -0.97 -22.01 16.61 -57.17 -0.95 -22.96 16 14 N -0.98 -19.35 2.81 -115.67 -0.33 -19.68 16 15 C 0.24 5.71 4.90 -5.20 -0.03 5.69 16 16 C -0.55 -13.05 6.76 -34.44 -0.23 -13.28 16 17 H 0.07 1.56 5.27 -52.48 -0.28 1.28 16 18 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -24.17 13.29 55.43 0.74 -23.43 16 20 Si 0.88 19.52 28.49 -169.99 -4.84 14.68 16 21 H -0.27 -5.56 6.50 56.52 0.37 -5.20 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.14 2.26 5.82 -4.04 -0.02 2.24 16 25 C 0.04 0.69 6.28 37.15 0.23 0.93 16 26 O -0.37 -6.64 9.03 -35.23 -0.32 -6.96 16 27 C 0.03 0.42 11.01 101.05 1.11 1.54 16 28 H 0.10 1.41 8.06 -52.48 -0.42 0.98 16 29 H 0.09 1.33 7.85 -52.48 -0.41 0.92 16 30 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.68 6.07 -51.93 -0.31 1.37 16 34 H 0.09 1.25 8.01 -51.93 -0.42 0.83 16 35 H 0.40 5.23 8.96 -34.47 -0.31 4.92 16 36 H 0.06 1.50 6.61 -51.93 -0.34 1.15 16 37 H 0.04 1.18 7.01 -51.93 -0.36 0.82 16 38 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 40 H 0.08 1.15 7.44 -51.93 -0.39 0.77 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -30.92 372.08 -8.02 -38.94 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.86 Total: 10.77 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 0.96 Total: -4.57 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.39 Total: -61.09 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -2.63 Total: -56.88 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.84 Total: 14.68 kcal Atomic # 16 Polarization: 53.18 SS G_CDS: -0.64 Total: 52.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.92 -8.02 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451862570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.747 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds