Wall clock time and date at job start Tue Mar 31 2020 17:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00043 * 2 1 4 4 H 1.09002 * 109.86632 * 359.55393 * 3 2 1 5 5 O 1.43740 * 109.87824 * 238.54549 * 3 2 1 6 6 C 1.44381 * 106.97352 * 214.05970 * 5 3 2 7 7 C 1.54998 * 103.48999 * 40.06571 * 6 5 3 8 8 C 1.54100 * 109.87513 * 120.71345 * 3 2 1 9 9 H 1.08995 * 110.49369 * 2.77749 * 8 3 2 10 10 N 1.46498 * 110.48927 * 240.12900 * 8 3 2 11 11 S 1.65601 * 120.00066 * 118.10418 * 10 8 3 12 12 O 1.42098 * 106.40532 * 176.07322 * 11 10 8 13 13 O 1.42108 * 106.40066 * 308.98842 * 11 10 8 14 14 N 1.65594 * 107.21780 * 62.52498 * 11 10 8 15 15 C 1.46497 * 120.00323 * 276.27718 * 14 11 10 16 16 C 1.50699 * 109.47158 * 95.00142 * 15 14 11 17 17 H 1.08009 * 119.99830 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00349 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99985 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00331 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46947 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47012 * 119.99925 * 20 18 16 23 23 H 1.48500 * 109.47556 * 240.00195 * 20 18 16 24 24 C 1.46510 * 119.99798 * 96.28090 * 14 11 10 25 25 C 1.52994 * 109.47172 * 94.79934 * 24 14 11 26 26 O 1.42900 * 109.47382 * 64.80085 * 25 24 14 27 27 C 1.42896 * 114.00339 * 179.97438 * 26 25 24 28 28 H 1.08003 * 120.00244 * 179.97438 * 1 2 3 29 29 H 1.08006 * 120.00207 * 359.72183 * 1 2 3 30 30 H 1.07999 * 120.00281 * 180.02562 * 2 1 3 31 31 H 1.08996 * 110.61575 * 158.56426 * 6 5 3 32 32 H 1.09001 * 110.62031 * 281.40391 * 6 5 3 33 33 H 1.08995 * 110.90802 * 81.17112 * 7 6 5 34 34 H 1.08996 * 110.90496 * 204.74189 * 7 6 5 35 35 H 0.96999 * 120.00340 * 298.10832 * 10 8 3 36 36 H 1.08998 * 109.47096 * 214.99650 * 15 14 11 37 37 H 1.08997 * 109.47482 * 335.00074 * 15 14 11 38 38 H 0.96996 * 120.00131 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.47102 * 214.79959 * 24 14 11 40 40 H 1.08997 * 109.46850 * 334.79848 * 24 14 11 41 41 H 1.08997 * 109.47416 * 184.79987 * 25 24 14 42 42 H 1.09003 * 109.47161 * 304.79840 * 25 24 14 43 43 H 1.09005 * 109.47304 * 59.99426 * 27 26 25 44 44 H 1.08999 * 109.47331 * 179.97438 * 27 26 25 45 45 H 1.09002 * 109.47086 * 299.99968 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3609 2.1385 -0.0080 5 8 2.9187 1.3757 -1.1531 6 6 4.1030 2.0997 -0.7558 7 6 4.3926 1.5649 0.6698 8 6 2.9665 1.3887 1.2459 9 1 2.9007 0.4691 1.8273 10 7 2.5995 2.5441 2.0686 11 16 2.0580 2.3193 3.6173 12 8 1.8779 3.6153 4.1715 13 8 1.0172 1.3546 3.5424 14 7 3.2897 1.6131 4.4696 15 6 3.4796 0.1615 4.4155 16 6 4.5011 -0.1725 3.3591 17 1 4.9630 0.6177 2.7856 18 6 4.8461 -1.4866 3.1246 19 7 4.2841 -2.4487 3.8233 20 14 6.1117 -1.9006 1.8146 21 1 6.5908 -0.6484 1.1759 22 1 7.2586 -2.6068 2.4400 23 1 5.4925 -2.7755 0.7868 24 6 4.1894 2.4400 5.2778 25 6 3.6908 2.4727 6.7239 26 8 3.7704 1.1608 7.2850 27 6 3.3264 1.0806 8.6408 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5401 0.9353 0.0045 30 1 1.8500 -0.9353 -0.0004 31 1 4.9329 1.8753 -1.4259 32 1 3.9082 3.1720 -0.7340 33 1 4.9159 0.6097 0.6281 34 1 4.9601 2.2922 1.2503 35 1 2.6737 3.4407 1.7061 36 1 3.8289 -0.1956 5.3843 37 1 2.5329 -0.3200 4.1706 38 1 4.5265 -3.3732 3.6581 39 1 5.1941 2.0183 5.2493 40 1 4.2092 3.4535 4.8773 41 1 4.3098 3.1550 7.3063 42 1 2.6559 2.8142 6.7437 43 1 2.2839 1.3935 8.7009 44 1 3.4179 0.0532 8.9930 45 1 3.9382 1.7341 9.2627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451862570.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:52 Heat of formation + Delta-G solvation = -163.291197 kcal Electronic energy + Delta-G solvation = -29711.126031 eV Core-core repulsion = 25662.628227 eV Total energy + Delta-G solvation = -4048.497804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72178 -39.05397 -38.26981 -36.97913 -36.86222 -35.75234 -34.70407 -34.47411 -31.30756 -31.00559 -28.63922 -28.37645 -26.97653 -24.63249 -23.81595 -23.26207 -22.44642 -21.22038 -20.28678 -18.83810 -18.64898 -18.25214 -17.75902 -17.22105 -17.14756 -17.00305 -16.48770 -16.30414 -16.07618 -15.77351 -15.44440 -15.05734 -14.94369 -14.45331 -14.19957 -13.95930 -13.77527 -13.51276 -13.34855 -13.24806 -13.21326 -13.08126 -12.96462 -12.81405 -12.65156 -12.53801 -12.41371 -12.10415 -11.99564 -11.90072 -11.88543 -11.67982 -11.50135 -10.90266 -10.66579 -10.55829 -10.45297 -10.09837 -9.69508 -8.07344 -6.17440 -0.29250 1.27425 1.43521 1.46774 1.54898 1.97333 2.46515 2.60011 3.00043 3.11477 3.25252 3.45432 3.64738 3.82049 3.93117 4.01557 4.16247 4.20769 4.31904 4.37779 4.40842 4.43666 4.50280 4.52407 4.55704 4.59966 4.83933 4.85557 4.91693 4.93127 5.01522 5.10580 5.18042 5.30799 5.55091 5.66105 5.67444 5.75276 5.83287 5.91048 5.97591 6.22875 6.24058 6.40412 6.95592 7.50080 9.01103 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.006450 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.510348 B = 4339.812591 C = 5745.854200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C 0.098 3.902 4 H 0.087 0.913 5 O -0.385 6.385 6 C 0.043 3.957 7 C -0.158 4.158 8 C 0.125 3.875 9 H 0.107 0.893 10 N -1.102 6.102 11 S 2.796 3.204 12 O -1.004 7.004 13 O -1.013 7.013 14 N -0.988 5.988 15 C 0.262 3.738 16 C -0.531 4.531 17 H 0.090 0.910 18 C 0.018 3.982 19 N -0.927 5.927 20 Si 0.933 3.067 21 H -0.239 1.239 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.126 3.874 25 C 0.040 3.960 26 O -0.407 6.407 27 C 0.025 3.975 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.423 0.577 36 H 0.032 0.968 37 H 0.007 0.993 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.084 0.916 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 12.228 -2.456 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.195 4.195 3 C 0.039 3.961 4 H 0.104 0.896 5 O -0.304 6.304 6 C -0.033 4.033 7 C -0.197 4.197 8 C 0.016 3.984 9 H 0.125 0.875 10 N -0.863 5.863 11 S 2.804 3.196 12 O -0.988 6.988 13 O -0.997 6.997 14 N -0.828 5.828 15 C 0.139 3.861 16 C -0.570 4.570 17 H 0.108 0.892 18 C -0.182 4.182 19 N -0.567 5.567 20 Si 0.759 3.241 21 H -0.162 1.162 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.000 4.000 25 C -0.039 4.039 26 O -0.326 6.326 27 C -0.071 4.071 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.259 0.741 36 H 0.050 0.950 37 H 0.025 0.975 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.282 11.864 -2.321 12.092 hybrid contribution 0.778 -0.549 -0.137 0.962 sum 0.496 11.315 -2.458 11.589 Atomic orbital electron populations 1.24019 0.95276 1.03136 0.97702 1.22911 0.96667 0.97781 1.02162 1.22252 0.92469 0.96014 0.85352 0.89580 1.88888 1.31482 1.77265 1.32813 1.23816 0.87772 0.96782 0.94955 1.23524 0.95885 1.03242 0.97082 1.22234 0.94105 0.89322 0.92691 0.87502 1.55685 1.84410 1.14687 1.31566 1.01298 0.73542 0.71753 0.73019 1.93526 1.86449 1.40846 1.77970 1.93556 1.55521 1.63709 1.86889 1.57460 1.48657 1.16642 1.60070 1.18783 0.95600 0.73878 0.97849 1.22063 1.22923 0.92668 1.19318 0.89232 1.25640 0.97938 0.96565 0.98019 1.70095 1.44307 1.00238 1.42064 0.85916 0.79273 0.79407 0.79530 1.16189 1.21735 1.21565 1.21408 0.94978 0.95296 0.88295 1.23199 1.00272 0.84906 0.95493 1.88051 1.86496 1.30040 1.28047 1.22877 0.98572 1.03103 0.82596 0.86830 0.87318 0.87982 0.87403 0.89749 0.90796 0.87714 0.74106 0.95021 0.97497 0.93085 0.89297 0.87005 0.89500 0.94309 0.94165 0.89771 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 14.32 67.78 0.97 -4.02 16 2 C -0.18 -6.10 8.94 25.65 0.23 -5.87 16 3 C 0.10 3.15 3.59 30.22 0.11 3.25 16 4 H 0.09 2.48 7.60 -2.39 -0.02 2.46 16 5 O -0.39 -11.84 11.17 -148.98 -1.66 -13.50 16 6 C 0.04 1.02 7.72 72.67 0.56 1.58 16 7 C -0.16 -4.59 5.11 31.90 0.16 -4.43 16 8 C 0.12 4.20 2.62 45.98 0.12 4.32 16 9 H 0.11 4.52 4.84 -2.39 -0.01 4.50 16 10 N -1.10 -33.18 5.38 -165.27 -0.89 -34.07 16 11 S 2.80 104.75 5.95 -56.49 -0.34 104.41 16 12 O -1.00 -36.94 16.91 -128.00 -2.16 -39.10 16 13 O -1.01 -46.58 16.61 -128.00 -2.13 -48.70 16 14 N -0.99 -38.61 2.81 -519.86 -1.46 -40.07 16 15 C 0.26 12.82 4.90 85.63 0.42 13.23 16 16 C -0.53 -25.56 6.76 25.60 0.17 -25.39 16 17 H 0.09 3.87 5.27 -2.91 -0.02 3.86 16 18 C 0.02 0.92 5.46 84.65 0.46 1.38 16 19 N -0.93 -52.90 13.29 21.45 0.28 -52.62 16 20 Si 0.93 40.24 28.49 68.60 1.95 42.20 16 21 H -0.24 -9.09 6.50 99.48 0.65 -8.44 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 24 C 0.13 4.00 5.82 86.38 0.50 4.50 16 25 C 0.04 1.20 6.28 71.98 0.45 1.65 16 26 O -0.41 -14.65 9.03 -148.98 -1.35 -15.99 16 27 C 0.02 0.67 11.01 113.37 1.25 1.92 16 28 H 0.11 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.11 2.92 7.85 -2.91 -0.02 2.90 16 30 H 0.10 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 2.47 6.07 -2.39 -0.01 2.46 16 34 H 0.10 2.62 8.01 -2.39 -0.02 2.60 16 35 H 0.42 9.54 8.96 -96.75 -0.87 8.67 16 36 H 0.03 1.71 6.61 -2.39 -0.02 1.70 16 37 H 0.01 0.39 7.01 -2.39 -0.02 0.38 16 38 H 0.26 14.25 8.31 -92.71 -0.77 13.47 16 39 H 0.09 2.86 8.11 -2.39 -0.02 2.84 16 40 H 0.11 2.83 7.44 -2.39 -0.02 2.81 16 41 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 42 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -68.85 372.08 -2.27 -71.12 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: 0.07 Total: 34.20 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 5.41 Total: -7.87 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -2.07 Total: -126.76 kcal Atomic # 8 Polarization: -110.00 SS G_CDS: -7.30 Total: -117.30 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.95 Total: 42.20 kcal Atomic # 16 Polarization: 104.75 SS G_CDS: -0.34 Total: 104.41 kcal Total: -68.85 -2.27 -71.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451862570.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.175 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds