Wall clock time and date at job start Tue Mar 31 2020 17:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34767 * 120.00112 * 2 1 4 4 O 1.21516 * 120.00167 * 359.72949 * 3 2 1 5 5 O 1.34643 * 120.00237 * 179.72579 * 3 2 1 6 6 C 1.45195 * 117.00241 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47330 * 180.02562 * 6 5 3 8 8 H 1.09004 * 109.58516 * 175.84363 * 7 6 5 9 9 C 1.53191 * 109.58178 * 296.12913 * 7 6 5 10 10 C 1.53079 * 109.28979 * 174.27931 * 9 7 6 11 11 C 1.53040 * 109.65974 * 298.84428 * 10 9 7 12 12 C 1.53186 * 109.30917 * 61.30185 * 11 10 9 13 13 N 1.46922 * 109.58409 * 55.55937 * 7 6 5 14 14 S 1.65603 * 120.63596 * 6.58627 * 13 7 6 15 15 O 1.42098 * 104.27185 * 23.93057 * 14 13 7 16 16 O 1.42094 * 104.27958 * 151.78665 * 14 13 7 17 17 C 1.81396 * 104.44861 * 267.86247 * 14 13 7 18 18 C 1.53001 * 109.47029 * 171.38803 * 17 14 13 19 19 C 1.50707 * 109.47114 * 179.97438 * 18 17 14 20 20 H 1.07995 * 119.99506 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99952 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99941 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47222 * 120.00367 * 23 21 19 26 26 H 1.48509 * 109.47047 * 240.00166 * 23 21 19 27 27 H 1.09001 * 109.47212 * 60.27476 * 1 2 3 28 28 H 1.08999 * 109.47578 * 180.27548 * 1 2 3 29 29 H 1.09005 * 109.47253 * 300.27570 * 1 2 3 30 30 H 0.96999 * 119.99927 * 179.72557 * 2 1 3 31 31 H 1.09004 * 109.47034 * 300.00253 * 6 5 3 32 32 H 1.08998 * 109.47405 * 59.99840 * 6 5 3 33 33 H 1.09002 * 109.49763 * 294.37119 * 9 7 6 34 34 H 1.08998 * 109.50224 * 54.47163 * 9 7 6 35 35 H 1.09006 * 109.44819 * 178.75146 * 10 9 7 36 36 H 1.08995 * 109.33737 * 58.86951 * 10 9 7 37 37 H 1.09004 * 109.49327 * 301.35151 * 11 10 9 38 38 H 1.08998 * 109.49743 * 181.25349 * 11 10 9 39 39 H 1.09004 * 109.58602 * 185.57828 * 12 11 10 40 40 H 1.08996 * 109.70852 * 65.22629 * 12 11 10 41 41 H 1.09004 * 109.47108 * 291.38358 * 17 14 13 42 42 H 1.09001 * 109.47523 * 51.38674 * 17 14 13 43 43 H 1.09004 * 109.46813 * 299.99736 * 18 17 14 44 44 H 1.08997 * 109.47534 * 59.99789 * 18 17 14 45 45 H 0.97005 * 119.99580 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5313 2.2195 -0.0050 5 8 3.4852 1.1671 0.0056 6 6 4.1444 2.4608 0.0058 7 6 5.6613 2.2604 0.0118 8 1 6.1580 3.2278 -0.0624 9 6 6.0821 1.5652 1.3104 10 6 7.5766 1.2396 1.2483 11 6 7.8487 0.2908 0.0788 12 6 7.4482 0.9748 -1.2321 13 7 6.0512 1.4178 -1.1268 14 16 4.9374 0.9753 -2.2697 15 8 3.9346 1.9788 -2.1885 16 8 5.7021 0.7978 -3.4541 17 6 4.2943 -0.6161 -1.6826 18 6 3.0989 -1.0315 -2.5424 19 6 2.5650 -2.3539 -2.0551 20 1 3.0320 -2.8486 -1.2164 21 6 1.4805 -2.9320 -2.6801 22 7 0.9123 -2.3296 -3.7018 23 14 0.8184 -4.5707 -2.0756 24 1 1.6276 -5.0359 -0.9207 25 1 -0.5964 -4.4081 -1.6547 26 1 0.8971 -5.5707 -3.1707 27 1 -0.3634 0.5096 -0.8924 28 1 -0.3634 -1.0276 0.0049 29 1 -0.3634 0.5181 0.8875 30 1 1.9500 -0.8400 0.0040 31 1 3.8552 3.0161 -0.8865 32 1 3.8479 3.0196 0.8934 33 1 5.8859 2.2244 2.1561 34 1 5.5152 0.6419 1.4291 35 1 7.8836 0.7648 2.1803 36 1 8.1412 2.1612 1.1073 37 1 7.2650 -0.6209 0.2066 38 1 8.9098 0.0432 0.0505 39 1 7.5466 0.2694 -2.0572 40 1 8.0923 1.8361 -1.4090 41 1 5.0753 -1.3730 -1.7562 42 1 3.9787 -0.5195 -0.6438 43 1 2.3180 -0.2746 -2.4688 44 1 3.4145 -1.1281 -3.5812 45 1 0.1495 -2.7366 -4.1417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495834489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:35 Heat of formation + Delta-G solvation = -136.081383 kcal Electronic energy + Delta-G solvation = -30373.393474 eV Core-core repulsion = 26326.075576 eV Total energy + Delta-G solvation = -4047.317898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.17913 -38.65805 -37.00777 -35.80778 -35.40434 -34.39960 -33.61815 -32.53294 -31.92807 -31.12209 -27.32838 -25.95282 -25.56357 -24.08552 -22.30286 -21.66991 -20.85004 -20.21909 -18.54899 -18.52751 -17.59249 -16.79094 -16.41680 -15.81088 -15.61514 -15.32154 -14.74170 -14.62475 -14.57746 -14.46731 -14.34730 -13.99161 -13.74487 -13.37091 -13.12887 -12.86903 -12.56539 -12.35078 -11.87716 -11.74274 -11.67360 -11.59355 -11.48996 -11.35943 -11.24268 -11.13094 -11.03748 -10.97088 -10.70445 -10.56153 -10.41316 -10.33591 -9.95468 -9.76852 -9.47932 -9.25101 -8.72527 -8.62075 -8.52275 -6.17550 -4.24028 0.87170 2.65379 3.03324 3.17454 3.27527 3.28616 3.46607 4.26184 4.36716 4.38787 4.57898 4.72154 4.77004 4.83647 5.02907 5.06253 5.17687 5.24801 5.34425 5.51162 5.60129 5.62395 5.69793 5.72693 5.75213 5.87499 5.92197 5.94204 5.95884 6.03435 6.17041 6.28272 6.28840 6.40612 6.60057 6.69913 6.79187 6.94530 7.31929 7.38117 7.75075 8.06044 8.13582 8.80888 8.91662 9.40959 10.92638 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.005400 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.453682 B = 5184.096417 C = 5893.925735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.700 5.700 3 C 0.659 3.341 4 O -0.575 6.575 5 O -0.381 6.381 6 C 0.034 3.966 7 C 0.166 3.834 8 H 0.094 0.906 9 C -0.133 4.133 10 C -0.115 4.115 11 C -0.137 4.137 12 C 0.123 3.877 13 N -1.000 6.000 14 S 2.590 3.410 15 O -0.956 6.956 16 O -0.977 6.977 17 C -0.590 4.590 18 C 0.032 3.968 19 C -0.518 4.518 20 H 0.061 0.939 21 C 0.063 3.937 22 N -0.883 5.883 23 Si 0.890 3.110 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.283 1.283 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.417 0.583 31 H 0.147 0.853 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.136 0.864 43 H 0.036 0.964 44 H 0.024 0.976 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.491 5.760 11.559 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.360 5.360 3 C 0.411 3.589 4 O -0.464 6.464 5 O -0.296 6.296 6 C -0.042 4.042 7 C 0.060 3.940 8 H 0.112 0.888 9 C -0.172 4.172 10 C -0.152 4.152 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.837 5.837 14 S 2.692 3.308 15 O -0.947 6.947 16 O -0.968 6.968 17 C -0.724 4.724 18 C -0.007 4.007 19 C -0.557 4.557 20 H 0.079 0.921 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.717 3.283 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.209 1.209 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.255 0.745 31 H 0.163 0.837 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.154 0.846 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.919 6.853 10.609 16.060 hybrid contribution -0.151 -1.825 0.681 1.953 sum 9.769 5.028 11.291 15.754 Atomic orbital electron populations 1.21423 0.77308 1.02631 1.01634 1.44574 1.07478 1.06813 1.77140 1.17829 0.80213 0.84729 0.76097 1.90920 1.68530 1.30979 1.55960 1.86108 1.20704 1.35186 1.87648 1.24179 0.88943 0.84287 1.06808 1.21100 0.92246 0.94392 0.86266 0.88804 1.22015 0.96692 1.02045 0.96482 1.21453 0.96038 0.99492 0.98239 1.21949 1.01473 0.99240 0.94977 1.21339 0.81583 0.99309 0.97996 1.57946 1.20660 1.64522 1.40522 1.05710 0.73546 0.78336 0.73225 1.93436 1.60197 1.55543 1.85495 1.93500 1.70331 1.87898 1.45058 1.30728 1.11076 1.17970 1.12598 1.18954 0.89526 0.98578 0.93682 1.20967 1.14028 1.04347 1.16369 0.92069 1.25026 0.96658 0.97440 0.94880 1.69974 1.22390 1.38594 1.21082 0.86576 0.78848 0.83925 0.78919 1.19627 1.20800 1.20877 0.91953 0.90059 0.92940 0.74536 0.83652 0.90704 0.90952 0.90372 0.91846 0.92005 0.91099 0.90971 0.89330 0.91420 0.86920 0.84636 0.94538 0.95768 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.87 10.70 59.85 0.64 2.51 16 2 N -0.70 -12.83 4.99 -72.12 -0.36 -13.19 16 3 C 0.66 12.88 7.92 54.05 0.43 13.31 16 4 O -0.58 -12.65 16.13 -19.28 -0.31 -12.96 16 5 O -0.38 -6.47 4.21 -48.11 -0.20 -6.67 16 6 C 0.03 0.50 4.10 37.16 0.15 0.66 16 7 C 0.17 1.99 3.27 -67.60 -0.22 1.77 16 8 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 9 C -0.13 -1.31 5.33 -26.59 -0.14 -1.45 16 10 C -0.11 -0.96 5.88 -26.67 -0.16 -1.11 16 11 C -0.14 -1.26 6.08 -26.61 -0.16 -1.43 16 12 C 0.12 1.42 6.30 -3.71 -0.02 1.39 16 13 N -1.00 -13.93 3.19 -106.48 -0.34 -14.27 16 14 S 2.59 48.58 4.66 -107.50 -0.50 48.08 16 15 O -0.96 -19.94 12.05 -66.84 -0.81 -20.75 16 16 O -0.98 -21.01 16.80 -57.54 -0.97 -21.98 16 17 C -0.59 -11.29 5.37 37.16 0.20 -11.09 16 18 C 0.03 0.77 4.49 -27.88 -0.13 0.64 16 19 C -0.52 -12.88 7.99 -34.44 -0.28 -13.16 16 20 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.88 -24.65 13.29 55.43 0.74 -23.92 16 23 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.42 7.53 6.62 -40.82 -0.27 7.26 16 31 H 0.15 2.57 5.28 -54.92 -0.29 2.28 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.86 7.66 -51.93 -0.40 0.46 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.09 7.16 -51.93 -0.37 0.71 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.11 1.97 8.14 -51.92 -0.42 1.55 16 42 H 0.14 2.39 4.38 -51.92 -0.23 2.16 16 43 H 0.04 0.95 7.49 -51.93 -0.39 0.56 16 44 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -33.36 359.57 -9.12 -42.48 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.98 Total: 9.55 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.22 Total: -6.42 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.04 Total: -51.38 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -2.29 Total: -62.36 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 48.58 SS G_CDS: -0.50 Total: 48.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.36 -9.12 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495834489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.600 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds