Wall clock time and date at job start Tue Mar 31 2020 17:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34767 * 120.00112 * 2 1 4 4 O 1.21516 * 120.00167 * 359.72949 * 3 2 1 5 5 O 1.34643 * 120.00237 * 179.72579 * 3 2 1 6 6 C 1.45195 * 117.00241 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47330 * 180.02562 * 6 5 3 8 8 H 1.09004 * 109.58516 * 175.84363 * 7 6 5 9 9 C 1.53191 * 109.58178 * 296.12913 * 7 6 5 10 10 C 1.53079 * 109.28979 * 174.27931 * 9 7 6 11 11 C 1.53040 * 109.65974 * 298.84428 * 10 9 7 12 12 C 1.53186 * 109.30917 * 61.30185 * 11 10 9 13 13 N 1.46922 * 109.58409 * 55.55937 * 7 6 5 14 14 S 1.65603 * 120.63596 * 6.58627 * 13 7 6 15 15 O 1.42098 * 104.27185 * 23.93057 * 14 13 7 16 16 O 1.42094 * 104.27958 * 151.78665 * 14 13 7 17 17 C 1.81396 * 104.44861 * 267.86247 * 14 13 7 18 18 C 1.53001 * 109.47029 * 171.38803 * 17 14 13 19 19 C 1.50707 * 109.47114 * 179.97438 * 18 17 14 20 20 H 1.07995 * 119.99506 * 359.97438 * 19 18 17 21 21 C 1.37870 * 119.99952 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99941 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47222 * 120.00367 * 23 21 19 26 26 H 1.48509 * 109.47047 * 240.00166 * 23 21 19 27 27 H 1.09001 * 109.47212 * 60.27476 * 1 2 3 28 28 H 1.08999 * 109.47578 * 180.27548 * 1 2 3 29 29 H 1.09005 * 109.47253 * 300.27570 * 1 2 3 30 30 H 0.96999 * 119.99927 * 179.72557 * 2 1 3 31 31 H 1.09004 * 109.47034 * 300.00253 * 6 5 3 32 32 H 1.08998 * 109.47405 * 59.99840 * 6 5 3 33 33 H 1.09002 * 109.49763 * 294.37119 * 9 7 6 34 34 H 1.08998 * 109.50224 * 54.47163 * 9 7 6 35 35 H 1.09006 * 109.44819 * 178.75146 * 10 9 7 36 36 H 1.08995 * 109.33737 * 58.86951 * 10 9 7 37 37 H 1.09004 * 109.49327 * 301.35151 * 11 10 9 38 38 H 1.08998 * 109.49743 * 181.25349 * 11 10 9 39 39 H 1.09004 * 109.58602 * 185.57828 * 12 11 10 40 40 H 1.08996 * 109.70852 * 65.22629 * 12 11 10 41 41 H 1.09004 * 109.47108 * 291.38358 * 17 14 13 42 42 H 1.09001 * 109.47523 * 51.38674 * 17 14 13 43 43 H 1.09004 * 109.46813 * 299.99736 * 18 17 14 44 44 H 1.08997 * 109.47534 * 59.99789 * 18 17 14 45 45 H 0.97005 * 119.99580 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5313 2.2195 -0.0050 5 8 3.4852 1.1671 0.0056 6 6 4.1444 2.4608 0.0058 7 6 5.6613 2.2604 0.0118 8 1 6.1580 3.2278 -0.0624 9 6 6.0821 1.5652 1.3104 10 6 7.5766 1.2396 1.2483 11 6 7.8487 0.2908 0.0788 12 6 7.4482 0.9748 -1.2321 13 7 6.0512 1.4178 -1.1268 14 16 4.9374 0.9753 -2.2697 15 8 3.9346 1.9788 -2.1885 16 8 5.7021 0.7978 -3.4541 17 6 4.2943 -0.6161 -1.6826 18 6 3.0989 -1.0315 -2.5424 19 6 2.5650 -2.3539 -2.0551 20 1 3.0320 -2.8486 -1.2164 21 6 1.4805 -2.9320 -2.6801 22 7 0.9123 -2.3296 -3.7018 23 14 0.8184 -4.5707 -2.0756 24 1 1.6276 -5.0359 -0.9207 25 1 -0.5964 -4.4081 -1.6547 26 1 0.8971 -5.5707 -3.1707 27 1 -0.3634 0.5096 -0.8924 28 1 -0.3634 -1.0276 0.0049 29 1 -0.3634 0.5181 0.8875 30 1 1.9500 -0.8400 0.0040 31 1 3.8552 3.0161 -0.8865 32 1 3.8479 3.0196 0.8934 33 1 5.8859 2.2244 2.1561 34 1 5.5152 0.6419 1.4291 35 1 7.8836 0.7648 2.1803 36 1 8.1412 2.1612 1.1073 37 1 7.2650 -0.6209 0.2066 38 1 8.9098 0.0432 0.0505 39 1 7.5466 0.2694 -2.0572 40 1 8.0923 1.8361 -1.4090 41 1 5.0753 -1.3730 -1.7562 42 1 3.9787 -0.5195 -0.6438 43 1 2.3180 -0.2746 -2.4688 44 1 3.4145 -1.1281 -3.5812 45 1 0.1495 -2.7366 -4.1417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495834489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:34 Heat of formation + Delta-G solvation = -160.754794 kcal Electronic energy + Delta-G solvation = -30374.463393 eV Core-core repulsion = 26326.075576 eV Total energy + Delta-G solvation = -4048.387817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.57902 -39.72856 -38.48177 -37.25082 -36.98987 -36.11696 -35.34628 -33.46420 -33.03763 -32.83986 -28.52173 -27.53372 -27.09798 -25.00777 -23.60602 -23.15614 -22.27691 -21.21831 -19.99446 -19.89522 -19.03374 -18.47678 -17.91701 -17.24647 -17.03972 -16.79644 -16.44499 -16.06038 -15.85422 -15.48538 -15.31800 -15.14641 -15.08589 -14.48373 -14.42445 -14.37157 -14.17794 -13.69844 -13.56860 -13.16318 -13.05645 -12.92876 -12.90655 -12.77265 -12.71809 -12.63925 -12.20022 -12.14091 -12.06952 -11.93473 -11.66605 -11.58734 -11.43622 -11.35994 -11.10311 -10.67501 -10.58276 -10.06296 -9.85020 -8.16983 -6.30481 -0.61981 1.28385 1.43744 1.47311 1.57879 1.73586 1.94252 2.42231 2.88989 3.15267 3.22192 3.28664 3.47675 3.80761 4.03759 4.11954 4.18609 4.25715 4.28536 4.40791 4.41473 4.47171 4.56763 4.63648 4.78284 4.82369 4.88812 4.92683 4.98399 5.06851 5.10530 5.26039 5.30439 5.33378 5.36152 5.38498 5.41907 5.52584 5.59528 5.74552 5.76437 6.14277 6.56662 6.83076 7.39639 7.41913 8.94776 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.005400 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.453682 B = 5184.096417 C = 5893.925735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.700 5.700 3 C 0.654 3.346 4 O -0.606 6.606 5 O -0.376 6.376 6 C 0.025 3.975 7 C 0.167 3.833 8 H 0.125 0.875 9 C -0.130 4.130 10 C -0.110 4.110 11 C -0.135 4.135 12 C 0.112 3.888 13 N -0.991 5.991 14 S 2.598 3.402 15 O -0.982 6.982 16 O -1.011 7.011 17 C -0.588 4.588 18 C 0.036 3.964 19 C -0.518 4.518 20 H 0.078 0.922 21 C 0.011 3.989 22 N -0.929 5.929 23 Si 0.958 3.042 24 H -0.253 1.253 25 H -0.276 1.276 26 H -0.290 1.290 27 H 0.037 0.963 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.418 0.582 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.130 0.870 42 H 0.153 0.847 43 H 0.010 0.990 44 H -0.014 1.014 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.504 5.162 14.545 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.359 5.359 3 C 0.407 3.593 4 O -0.497 6.497 5 O -0.291 6.291 6 C -0.050 4.050 7 C 0.061 3.939 8 H 0.142 0.858 9 C -0.169 4.169 10 C -0.148 4.148 11 C -0.174 4.174 12 C -0.012 4.012 13 N -0.831 5.831 14 S 2.700 3.300 15 O -0.972 6.972 16 O -1.001 7.001 17 C -0.720 4.720 18 C -0.003 4.003 19 C -0.557 4.557 20 H 0.096 0.904 21 C -0.188 4.188 22 N -0.568 5.568 23 Si 0.783 3.217 24 H -0.176 1.176 25 H -0.201 1.201 26 H -0.217 1.217 27 H 0.056 0.944 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.256 0.744 31 H 0.134 0.866 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.148 0.852 42 H 0.170 0.830 43 H 0.028 0.972 44 H 0.004 0.996 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.950 6.233 13.608 19.153 hybrid contribution -0.703 -1.553 -0.250 1.722 sum 11.248 4.681 13.358 18.079 Atomic orbital electron populations 1.21556 0.76498 1.03774 1.01501 1.44680 1.08193 1.06527 1.76540 1.18036 0.80948 0.84580 0.75734 1.90888 1.69322 1.32000 1.57484 1.86084 1.19338 1.36449 1.87207 1.24365 0.90872 0.83439 1.06365 1.21417 0.90074 0.95815 0.86555 0.85752 1.22032 0.97759 1.01657 0.95492 1.21460 0.94808 1.00095 0.98425 1.21966 1.02735 0.98843 0.93828 1.21672 0.79991 1.00264 0.99258 1.57583 1.20751 1.64489 1.40239 1.05159 0.73601 0.77755 0.73466 1.93460 1.61733 1.55971 1.86050 1.93450 1.71051 1.88180 1.47417 1.30637 1.09602 1.19369 1.12429 1.18726 0.90767 0.98211 0.92595 1.21314 1.13725 1.04332 1.16335 0.90365 1.25894 0.97056 1.01031 0.94853 1.70131 1.23189 1.40623 1.22869 0.85501 0.78580 0.79061 0.78555 1.17638 1.20121 1.21698 0.94407 0.88308 0.90700 0.74444 0.86607 0.88646 0.88666 0.91674 0.90203 0.90387 0.91974 0.88602 0.90619 0.89269 0.85213 0.82970 0.97171 0.99555 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.62 10.70 127.77 1.37 4.99 16 2 N -0.70 -25.77 4.99 -612.52 -3.06 -28.83 16 3 C 0.65 25.83 7.92 129.79 1.03 26.85 16 4 O -0.61 -27.16 16.13 19.79 0.32 -26.84 16 5 O -0.38 -12.64 4.21 -48.09 -0.20 -12.84 16 6 C 0.03 0.74 4.10 71.98 0.30 1.03 16 7 C 0.17 3.55 3.27 44.98 0.15 3.70 16 8 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 9 C -0.13 -2.06 5.33 30.68 0.16 -1.89 16 10 C -0.11 -1.33 5.88 30.63 0.18 -1.15 16 11 C -0.13 -1.99 6.08 30.67 0.19 -1.80 16 12 C 0.11 2.31 6.30 86.36 0.54 2.86 16 13 N -0.99 -26.06 3.19 -490.79 -1.57 -27.63 16 14 S 2.60 99.12 4.66 -56.49 -0.26 98.86 16 15 O -0.98 -42.42 12.05 -118.75 -1.43 -43.85 16 16 O -1.01 -44.64 16.80 -127.65 -2.14 -46.79 16 17 C -0.59 -22.67 5.37 71.98 0.39 -22.29 16 18 C 0.04 1.80 4.49 29.85 0.13 1.93 16 19 C -0.52 -25.87 7.99 25.60 0.20 -25.66 16 20 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 21 C 0.01 0.57 5.46 84.65 0.46 1.03 16 22 N -0.93 -53.47 13.29 21.44 0.28 -53.19 16 23 Si 0.96 40.01 29.54 68.60 2.03 42.03 16 24 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.07 2.11 8.14 -2.38 -0.02 2.10 16 30 H 0.42 14.97 6.62 -92.71 -0.61 14.36 16 31 H 0.12 4.17 5.28 -49.85 -0.26 3.91 16 32 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.23 7.66 -2.39 -0.02 1.21 16 35 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.77 7.16 -2.39 -0.02 1.75 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.13 4.48 8.14 -2.39 -0.02 4.46 16 42 H 0.15 5.30 4.38 -2.39 -0.01 5.29 16 43 H 0.01 0.55 7.49 -2.39 -0.02 0.53 16 44 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 45 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -75.36 359.57 -0.80 -76.16 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.13 Total: 33.32 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.10 Total: -10.41 kcal Atomic # 7 Polarization: -105.31 SS G_CDS: -4.34 Total: -109.65 kcal Atomic # 8 Polarization: -126.86 SS G_CDS: -3.46 Total: -130.32 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: 99.12 SS G_CDS: -0.26 Total: 98.86 kcal Total: -75.36 -0.80 -76.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495834489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.598 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds