Wall clock time and date at job start Tue Mar 31 2020 17:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99963 * 2 1 4 4 C 1.34779 * 119.99846 * 179.97438 * 2 1 3 5 5 O 1.21503 * 120.00246 * 0.02562 * 4 2 1 6 6 O 1.34640 * 119.99605 * 180.02562 * 4 2 1 7 7 C 1.45206 * 116.99629 * 179.97438 * 6 4 2 8 8 H 1.09004 * 109.52096 * 29.92530 * 7 6 4 9 9 C 1.53039 * 109.50089 * 269.83740 * 7 6 4 10 10 C 1.53038 * 109.53877 * 178.68272 * 9 7 6 11 11 C 1.52769 * 109.38176 * 61.24140 * 10 9 7 12 12 N 1.46927 * 109.00715 * 305.58764 * 11 10 9 13 13 S 1.65599 * 120.63079 * 233.58575 * 12 11 10 14 14 O 1.42097 * 104.27788 * 153.64883 * 13 12 11 15 15 O 1.42100 * 104.27875 * 25.79067 * 13 12 11 16 16 C 1.81399 * 104.44808 * 269.72265 * 13 12 11 17 17 C 1.52998 * 109.47108 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.47348 * 179.97438 * 17 16 13 19 19 H 1.08000 * 119.99302 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00436 * 179.72505 * 18 17 16 21 21 N 1.31515 * 119.99684 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00405 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47154 * 89.99418 * 22 20 18 24 24 H 1.48493 * 109.47010 * 209.99942 * 22 20 18 25 25 H 1.48502 * 109.46736 * 329.99638 * 22 20 18 26 26 C 1.46927 * 118.74000 * 53.30962 * 12 11 10 27 27 H 1.09000 * 109.47469 * 240.00205 * 1 2 3 28 28 H 1.09003 * 109.46992 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47315 * 120.00031 * 1 2 3 30 30 H 1.08997 * 109.47276 * 269.99289 * 3 2 1 31 31 H 1.08997 * 109.47388 * 30.00042 * 3 2 1 32 32 H 1.08998 * 109.47004 * 150.00060 * 3 2 1 33 33 H 1.08997 * 109.45825 * 298.70738 * 9 7 6 34 34 H 1.09004 * 109.45541 * 58.67458 * 9 7 6 35 35 H 1.08999 * 109.49874 * 181.31489 * 10 9 7 36 36 H 1.08998 * 109.49966 * 301.38829 * 10 9 7 37 37 H 1.09001 * 109.51008 * 185.70771 * 11 10 9 38 38 H 1.08996 * 109.43250 * 65.42105 * 11 10 9 39 39 H 1.09000 * 109.47516 * 59.99948 * 16 13 12 40 40 H 1.09002 * 109.46834 * 299.99504 * 16 13 12 41 41 H 1.09001 * 109.47671 * 59.99908 * 17 16 13 42 42 H 1.08998 * 109.47454 * 299.99906 * 17 16 13 43 43 H 0.97004 * 120.00247 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.58430 * 66.42701 * 26 12 11 45 45 H 1.09003 * 109.58668 * 186.85593 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5313 -2.2195 0.0005 6 8 3.4852 -1.1672 0.0010 7 6 4.1444 -2.4610 0.0022 8 1 3.5166 -3.1901 -0.5101 9 6 4.3794 -2.9134 1.4452 10 6 5.0445 -4.2917 1.4476 11 6 6.3965 -4.2035 0.7419 12 7 6.2012 -3.6297 -0.5966 13 16 6.7645 -4.4146 -1.9415 14 8 5.9124 -3.9711 -2.9887 15 8 6.8036 -5.7824 -1.5584 16 6 8.4444 -3.7698 -2.1714 17 6 9.0790 -4.4262 -3.3992 18 6 10.4744 -3.8901 -3.5906 19 1 10.8688 -3.1544 -2.9053 20 6 11.2492 -4.3425 -4.6375 21 7 10.7707 -5.2423 -5.4687 22 14 12.9790 -3.6785 -4.8743 23 1 13.9410 -4.5240 -4.1228 24 1 13.3240 -3.7001 -6.3185 25 1 13.0471 -2.2834 -4.3699 26 6 5.4911 -2.3492 -0.7195 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 2.3792 1.5833 -1.0276 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1384 0.5138 33 1 5.0274 -2.1965 1.9494 34 1 3.4246 -2.9701 1.9679 35 1 5.1903 -4.6235 2.4755 36 1 4.4080 -5.0037 0.9222 37 1 6.8263 -5.2012 0.6525 38 1 7.0658 -3.5654 1.3188 39 1 9.0435 -3.9936 -1.2888 40 1 8.4023 -2.6905 -2.3179 41 1 8.4798 -4.2019 -4.2817 42 1 9.1209 -5.5055 -3.2533 43 1 11.3159 -5.5609 -6.2050 44 1 6.0851 -1.5569 -0.2640 45 1 5.3237 -2.1239 -1.7728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496760968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:42 Heat of formation + Delta-G solvation = -152.582203 kcal Electronic energy + Delta-G solvation = -27642.408013 eV Core-core repulsion = 23594.374585 eV Total energy + Delta-G solvation = -4048.033427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84936 -38.66729 -36.77946 -36.60415 -35.77365 -35.47277 -33.90561 -32.37225 -31.17398 -30.74405 -28.47141 -26.55941 -25.64595 -24.73511 -23.37608 -21.67367 -21.05809 -20.51974 -18.64784 -18.14891 -17.70883 -17.21235 -16.73051 -16.53086 -15.92124 -15.53054 -15.11195 -14.84589 -14.76038 -14.64025 -14.52785 -13.91822 -13.59437 -13.49155 -13.38625 -13.12440 -13.02194 -12.93183 -12.52860 -12.38900 -12.03585 -11.78644 -11.75725 -11.63656 -11.51847 -11.41551 -11.12161 -11.09365 -10.98321 -10.95018 -10.77787 -10.44169 -10.39750 -10.32961 -9.78501 -9.36773 -9.16875 -8.87064 -8.51624 -6.13589 -4.19398 0.65929 1.84013 2.58771 2.92372 3.25275 3.31547 3.34200 3.58337 4.25107 4.36520 4.40523 4.52155 4.57942 4.68822 4.75752 4.80024 4.90733 4.97019 5.03318 5.11253 5.21558 5.21849 5.30231 5.36298 5.37751 5.52003 5.55542 5.58846 5.63834 5.68578 5.71918 5.84158 5.94354 6.01572 6.08413 6.24525 6.46374 6.56266 6.96541 7.28296 7.34064 7.79233 8.02933 8.15819 8.84015 9.45458 10.97437 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.002651 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.292918 B =10561.379542 C =11171.993255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.607 5.607 3 C 0.083 3.917 4 C 0.648 3.352 5 O -0.567 6.567 6 O -0.360 6.360 7 C 0.097 3.903 8 H 0.094 0.906 9 C -0.132 4.132 10 C -0.128 4.128 11 C 0.113 3.887 12 N -1.002 6.002 13 S 2.588 3.412 14 O -0.961 6.961 15 O -0.960 6.960 16 C -0.585 4.585 17 C 0.027 3.973 18 C -0.520 4.520 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.125 3.875 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.265 0.735 44 H 0.081 0.919 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.371 12.555 16.221 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.348 5.348 3 C -0.060 4.060 4 C 0.402 3.598 5 O -0.455 6.455 6 O -0.274 6.274 7 C 0.040 3.960 8 H 0.112 0.888 9 C -0.169 4.169 10 C -0.167 4.167 11 C -0.013 4.013 12 N -0.839 5.839 13 S 2.687 3.313 14 O -0.952 6.952 15 O -0.950 6.950 16 C -0.719 4.719 17 C -0.012 4.012 18 C -0.560 4.560 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.001 4.001 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.993 11.445 15.578 25.737 hybrid contribution 1.332 0.777 0.055 1.543 sum -15.660 12.222 15.633 25.279 Atomic orbital electron populations 1.21633 0.76376 1.02693 1.02833 1.46499 1.06857 1.04361 1.77104 1.21841 0.97487 0.84210 1.02470 1.18030 0.81340 0.84099 0.76362 1.91002 1.68732 1.30373 1.55380 1.86213 1.18707 1.36018 1.86413 1.23053 0.93372 0.81781 0.97834 0.88774 1.21905 1.01780 0.97788 0.95470 1.21775 0.96855 0.96561 1.01480 1.21431 0.97334 0.99960 0.82533 1.58005 1.70555 1.33705 1.21652 1.05853 0.78345 0.74557 0.72520 1.93539 1.64459 1.82426 1.54748 1.93535 1.87933 1.31844 1.81708 1.30472 1.19095 1.11900 1.10446 1.18981 0.97231 0.96241 0.88731 1.20994 0.97842 1.24655 1.12475 0.92017 1.25074 0.98804 0.94953 0.95686 1.69956 1.37342 1.29546 1.15987 0.86459 0.83978 0.79321 0.77468 1.20457 1.20996 1.19757 1.21200 0.90518 0.85863 1.02511 0.91843 0.89929 0.91721 0.92217 0.90850 0.90214 0.90716 0.91138 0.89930 0.90884 0.88124 0.91092 0.86109 0.86129 0.94826 0.94813 0.92500 0.90113 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.71 10.16 59.84 0.61 1.32 16 2 N -0.61 -5.57 3.27 -195.41 -0.64 -6.21 16 3 C 0.08 0.48 10.41 59.85 0.62 1.11 16 4 C 0.65 8.28 8.37 54.06 0.45 8.74 16 5 O -0.57 -9.02 15.60 -19.27 -0.30 -9.32 16 6 O -0.36 -4.33 8.71 -40.33 -0.35 -4.69 16 7 C 0.10 1.21 2.61 -26.61 -0.07 1.14 16 8 H 0.09 1.40 7.16 -51.93 -0.37 1.03 16 9 C -0.13 -1.36 5.53 -26.69 -0.15 -1.50 16 10 C -0.13 -1.29 6.07 -26.83 -0.16 -1.45 16 11 C 0.11 1.25 6.40 -3.93 -0.03 1.22 16 12 N -1.00 -13.60 3.23 -113.76 -0.37 -13.97 16 13 S 2.59 46.55 5.45 -107.50 -0.59 45.97 16 14 O -0.96 -20.00 16.59 -57.54 -0.95 -20.96 16 15 O -0.96 -19.64 16.58 -57.54 -0.95 -20.59 16 16 C -0.59 -11.02 6.12 37.16 0.23 -10.79 16 17 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 18 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 C 0.13 1.54 6.10 -3.71 -0.02 1.52 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.28 7.79 -51.93 -0.40 -0.12 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.24 7.92 -51.93 -0.41 -0.17 16 32 H 0.08 0.49 7.37 -51.93 -0.38 0.10 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.18 6.85 -51.93 -0.36 0.82 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 40 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.10 1.38 6.86 -51.93 -0.36 1.02 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -36.99 380.75 -9.09 -46.08 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.32 Total: -1.19 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 0.93 Total: -11.23 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.27 Total: -45.87 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -2.56 Total: -55.55 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 46.55 SS G_CDS: -0.59 Total: 45.97 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.99 -9.09 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496760968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.506 kcal (2) G-P(sol) polarization free energy of solvation -36.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds