Wall clock time and date at job start Tue Mar 31 2020 17:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 119.99963 * 2 1 4 4 C 1.34779 * 119.99846 * 179.97438 * 2 1 3 5 5 O 1.21503 * 120.00246 * 0.02562 * 4 2 1 6 6 O 1.34640 * 119.99605 * 180.02562 * 4 2 1 7 7 C 1.45206 * 116.99629 * 179.97438 * 6 4 2 8 8 H 1.09004 * 109.52096 * 29.92530 * 7 6 4 9 9 C 1.53039 * 109.50089 * 269.83740 * 7 6 4 10 10 C 1.53038 * 109.53877 * 178.68272 * 9 7 6 11 11 C 1.52769 * 109.38176 * 61.24140 * 10 9 7 12 12 N 1.46927 * 109.00715 * 305.58764 * 11 10 9 13 13 S 1.65599 * 120.63079 * 233.58575 * 12 11 10 14 14 O 1.42097 * 104.27788 * 153.64883 * 13 12 11 15 15 O 1.42100 * 104.27875 * 25.79067 * 13 12 11 16 16 C 1.81399 * 104.44808 * 269.72265 * 13 12 11 17 17 C 1.52998 * 109.47108 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.47348 * 179.97438 * 17 16 13 19 19 H 1.08000 * 119.99302 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00436 * 179.72505 * 18 17 16 21 21 N 1.31515 * 119.99684 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00405 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47154 * 89.99418 * 22 20 18 24 24 H 1.48493 * 109.47010 * 209.99942 * 22 20 18 25 25 H 1.48502 * 109.46736 * 329.99638 * 22 20 18 26 26 C 1.46927 * 118.74000 * 53.30962 * 12 11 10 27 27 H 1.09000 * 109.47469 * 240.00205 * 1 2 3 28 28 H 1.09003 * 109.46992 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47315 * 120.00031 * 1 2 3 30 30 H 1.08997 * 109.47276 * 269.99289 * 3 2 1 31 31 H 1.08997 * 109.47388 * 30.00042 * 3 2 1 32 32 H 1.08998 * 109.47004 * 150.00060 * 3 2 1 33 33 H 1.08997 * 109.45825 * 298.70738 * 9 7 6 34 34 H 1.09004 * 109.45541 * 58.67458 * 9 7 6 35 35 H 1.08999 * 109.49874 * 181.31489 * 10 9 7 36 36 H 1.08998 * 109.49966 * 301.38829 * 10 9 7 37 37 H 1.09001 * 109.51008 * 185.70771 * 11 10 9 38 38 H 1.08996 * 109.43250 * 65.42105 * 11 10 9 39 39 H 1.09000 * 109.47516 * 59.99948 * 16 13 12 40 40 H 1.09002 * 109.46834 * 299.99504 * 16 13 12 41 41 H 1.09001 * 109.47671 * 59.99908 * 17 16 13 42 42 H 1.08998 * 109.47454 * 299.99906 * 17 16 13 43 43 H 0.97004 * 120.00247 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.58430 * 66.42701 * 26 12 11 45 45 H 1.09003 * 109.58668 * 186.85593 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5313 -2.2195 0.0005 6 8 3.4852 -1.1672 0.0010 7 6 4.1444 -2.4610 0.0022 8 1 3.5166 -3.1901 -0.5101 9 6 4.3794 -2.9134 1.4452 10 6 5.0445 -4.2917 1.4476 11 6 6.3965 -4.2035 0.7419 12 7 6.2012 -3.6297 -0.5966 13 16 6.7645 -4.4146 -1.9415 14 8 5.9124 -3.9711 -2.9887 15 8 6.8036 -5.7824 -1.5584 16 6 8.4444 -3.7698 -2.1714 17 6 9.0790 -4.4262 -3.3992 18 6 10.4744 -3.8901 -3.5906 19 1 10.8688 -3.1544 -2.9053 20 6 11.2492 -4.3425 -4.6375 21 7 10.7707 -5.2423 -5.4687 22 14 12.9790 -3.6785 -4.8743 23 1 13.9410 -4.5240 -4.1228 24 1 13.3240 -3.7001 -6.3185 25 1 13.0471 -2.2834 -4.3699 26 6 5.4911 -2.3492 -0.7195 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 2.3792 1.5833 -1.0276 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1384 0.5138 33 1 5.0274 -2.1965 1.9494 34 1 3.4246 -2.9701 1.9679 35 1 5.1903 -4.6235 2.4755 36 1 4.4080 -5.0037 0.9222 37 1 6.8263 -5.2012 0.6525 38 1 7.0658 -3.5654 1.3188 39 1 9.0435 -3.9936 -1.2888 40 1 8.4023 -2.6905 -2.3179 41 1 8.4798 -4.2019 -4.2817 42 1 9.1209 -5.5055 -3.2533 43 1 11.3159 -5.5609 -6.2050 44 1 6.0851 -1.5569 -0.2640 45 1 5.3237 -2.1239 -1.7728 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496760968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:41 Heat of formation + Delta-G solvation = -180.136829 kcal Electronic energy + Delta-G solvation = -27643.602871 eV Core-core repulsion = 23594.374585 eV Total energy + Delta-G solvation = -4049.228285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.77754 -39.59632 -38.29575 -37.53624 -37.04111 -36.67825 -35.89351 -33.34568 -33.11936 -31.67201 -28.99778 -27.60228 -27.25084 -25.74917 -24.27392 -23.52095 -22.02769 -21.47483 -19.84810 -19.26265 -18.93184 -18.51730 -18.07315 -17.59309 -17.23795 -17.06351 -16.54227 -15.93539 -15.87926 -15.68870 -15.51967 -15.11064 -14.88578 -14.49192 -14.40364 -14.32493 -14.01505 -13.73190 -13.52551 -13.49576 -13.31537 -13.24444 -13.08999 -12.92587 -12.85487 -12.78815 -12.69085 -12.32235 -12.23827 -12.13567 -12.03067 -11.92707 -11.77659 -11.72774 -11.30534 -11.13173 -10.64476 -10.04676 -9.87289 -8.25646 -6.39921 -0.80136 0.98904 1.41867 1.43809 1.54917 1.62898 1.69376 2.38702 2.77917 2.84369 3.07910 3.15525 3.44762 3.63909 3.85482 3.92807 4.03268 4.06816 4.14762 4.20978 4.28597 4.37204 4.45165 4.47882 4.64612 4.71678 4.74076 4.75756 4.78387 4.86253 4.87563 4.96060 5.00343 5.06057 5.19245 5.26559 5.27837 5.36734 5.38520 5.56113 5.68689 6.05815 6.15704 6.74152 7.11430 7.30497 8.86731 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.002651 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.292918 B =10561.379542 C =11171.993255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.601 5.601 3 C 0.077 3.923 4 C 0.635 3.365 5 O -0.609 6.609 6 O -0.353 6.353 7 C 0.094 3.906 8 H 0.058 0.942 9 C -0.123 4.123 10 C -0.126 4.126 11 C 0.103 3.897 12 N -0.993 5.993 13 S 2.608 3.392 14 O -0.997 6.997 15 O -0.990 6.990 16 C -0.579 4.579 17 C 0.019 3.981 18 C -0.537 4.537 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.936 5.936 22 Si 0.975 3.025 23 H -0.270 1.270 24 H -0.285 1.285 25 H -0.256 1.256 26 C 0.123 3.877 27 H 0.059 0.941 28 H 0.123 0.877 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.114 0.886 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.004 0.996 42 H 0.006 0.994 43 H 0.267 0.733 44 H 0.120 0.880 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.323 15.554 18.752 28.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.342 5.342 3 C -0.065 4.065 4 C 0.389 3.611 5 O -0.501 6.501 6 O -0.266 6.266 7 C 0.036 3.964 8 H 0.077 0.923 9 C -0.161 4.161 10 C -0.165 4.165 11 C -0.021 4.021 12 N -0.833 5.833 13 S 2.707 3.293 14 O -0.987 6.987 15 O -0.980 6.980 16 C -0.711 4.711 17 C -0.020 4.020 18 C -0.576 4.576 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.576 5.576 22 Si 0.799 3.201 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.180 1.180 26 C -0.003 4.003 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.138 0.862 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.945 14.483 18.118 28.147 hybrid contribution 0.884 -0.112 -0.690 1.127 sum -15.061 14.371 17.428 27.149 Atomic orbital electron populations 1.21855 0.75089 1.05086 1.02026 1.46819 1.07815 1.04266 1.75279 1.22095 0.97841 0.83232 1.03290 1.18431 0.81396 0.84772 0.76452 1.90971 1.69370 1.32203 1.57531 1.86194 1.18519 1.35461 1.86425 1.23019 0.92768 0.81387 0.99181 0.92337 1.21869 1.02070 0.98364 0.93765 1.21804 0.95823 0.96018 1.02835 1.21797 0.98625 1.00430 0.81217 1.57578 1.70117 1.34172 1.21406 1.04914 0.77746 0.73901 0.72717 1.93489 1.65292 1.82827 1.57099 1.93490 1.88183 1.33996 1.82325 1.30326 1.19632 1.12792 1.08393 1.18845 0.97184 0.95247 0.90749 1.21518 0.98678 1.24705 1.12672 0.90319 1.26149 1.03695 0.95158 0.95410 1.70111 1.39319 1.31290 1.16851 0.85290 0.78124 0.79375 0.77336 1.19560 1.21015 1.17957 1.21379 0.90902 0.85851 1.02141 0.92259 0.85869 0.93016 0.91753 0.87567 0.90334 0.87974 0.91814 0.86748 0.93309 0.88928 0.87083 0.83414 0.83676 0.97718 0.97577 0.92422 0.86229 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.21 10.16 127.77 1.30 2.51 16 2 N -0.60 -10.24 3.27 ******* -3.28 -13.52 16 3 C 0.08 0.70 10.41 127.77 1.33 2.03 16 4 C 0.64 16.22 8.37 129.79 1.09 17.31 16 5 O -0.61 -20.18 15.60 19.83 0.31 -19.87 16 6 O -0.35 -8.21 8.71 -55.50 -0.48 -8.69 16 7 C 0.09 2.30 2.61 30.67 0.08 2.38 16 8 H 0.06 1.84 7.16 -2.38 -0.02 1.83 16 9 C -0.12 -2.29 5.53 30.62 0.17 -2.12 16 10 C -0.13 -2.30 6.07 30.53 0.19 -2.12 16 11 C 0.10 2.03 6.40 86.22 0.55 2.58 16 12 N -0.99 -25.67 3.23 -513.81 -1.66 -27.33 16 13 S 2.61 95.03 5.45 -56.49 -0.31 94.72 16 14 O -1.00 -43.12 16.59 -127.65 -2.12 -45.24 16 15 O -0.99 -41.60 16.58 -127.65 -2.12 -43.72 16 16 C -0.58 -21.31 6.12 71.98 0.44 -20.87 16 17 C 0.02 0.97 4.98 29.85 0.15 1.12 16 18 C -0.54 -29.41 9.11 25.60 0.23 -29.17 16 19 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 20 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 21 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 22 Si 0.98 42.89 29.54 68.60 2.03 44.92 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 C 0.12 2.83 6.10 86.36 0.53 3.36 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.12 0.46 7.79 -2.39 -0.02 0.44 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.11 0.29 7.92 -2.39 -0.02 0.27 16 32 H 0.08 0.76 7.37 -2.39 -0.02 0.74 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 2.02 6.85 -2.39 -0.02 2.00 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.15 4.60 8.14 -2.39 -0.02 4.58 16 40 H 0.15 4.59 8.14 -2.39 -0.02 4.57 16 41 H 0.00 0.25 8.14 -2.39 -0.02 0.24 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.09 2.33 6.86 -2.39 -0.02 2.31 16 Total: -1.00 -84.68 380.75 0.14 -84.55 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.97 Total: 13.86 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 6.51 Total: -22.86 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.66 Total: -97.66 kcal Atomic # 8 Polarization: -113.11 SS G_CDS: -4.41 Total: -117.52 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 95.03 SS G_CDS: -0.31 Total: 94.72 kcal Total: -84.68 0.14 -84.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496760968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.590 kcal (2) G-P(sol) polarization free energy of solvation -84.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds