Wall clock time and date at job start Tue Mar 31 2020 17:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35572 * 117.00083 * 2 1 4 4 N 1.32693 * 120.55444 * 0.28734 * 3 2 1 5 5 C 1.31823 * 120.79860 * 180.33199 * 4 3 2 6 6 N 1.31761 * 121.98337 * 359.65418 * 5 4 3 7 7 C 1.32457 * 121.03268 * 0.02562 * 6 5 4 8 8 C 1.38879 * 119.07754 * 359.97438 * 7 6 5 9 9 N 1.39924 * 120.89502 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99916 * 328.68293 * 9 8 7 11 11 O 1.21391 * 120.00294 * 3.94229 * 10 9 8 12 12 C 1.49338 * 119.99876 * 183.94340 * 10 9 8 13 13 O 1.21361 * 119.99846 * 353.35457 * 12 10 9 14 14 N 1.34780 * 119.99972 * 173.34754 * 12 10 9 15 15 C 1.46924 * 120.63243 * 171.31622 * 14 12 10 16 16 C 1.53194 * 108.89408 * 126.46448 * 15 14 12 17 17 C 1.53036 * 109.31326 * 54.56273 * 16 15 14 18 18 C 1.50694 * 109.46085 * 178.62875 * 17 16 15 19 19 H 1.07999 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99928 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00425 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47151 * 89.99910 * 22 20 18 24 24 H 1.48500 * 109.47415 * 210.00344 * 22 20 18 25 25 H 1.48500 * 109.47102 * 330.00113 * 22 20 18 26 26 C 1.53042 * 109.54162 * 298.63782 * 17 16 15 27 27 C 1.46966 * 120.65094 * 351.13733 * 14 12 10 28 28 H 1.08999 * 109.46759 * 300.00214 * 1 2 3 29 29 H 1.09003 * 109.46895 * 59.99718 * 1 2 3 30 30 H 1.08991 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.00817 * 179.67866 * 5 4 3 32 32 H 1.08000 * 120.46411 * 180.02562 * 7 6 5 33 33 H 0.96999 * 119.99746 * 148.67478 * 9 8 7 34 34 H 1.09002 * 109.58376 * 6.60924 * 15 14 12 35 35 H 1.08998 * 109.58937 * 246.32161 * 15 14 12 36 36 H 1.08995 * 109.49469 * 174.52143 * 16 15 14 37 37 H 1.09006 * 109.49753 * 294.58288 * 16 15 14 38 38 H 1.09008 * 109.45954 * 58.65806 * 17 16 15 39 39 H 0.96995 * 120.00284 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.49771 * 181.30941 * 26 17 16 41 41 H 1.08991 * 109.49597 * 301.41254 * 26 17 16 42 42 H 1.08995 * 109.46415 * 113.75222 * 27 14 12 43 43 H 1.08991 * 109.71713 * 353.46454 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2079 0.0000 4 7 1.3326 2.3277 0.0057 5 6 1.9260 3.5048 -0.0008 6 7 3.2381 3.6249 -0.0064 7 6 4.0216 2.5568 -0.0063 8 6 3.4421 1.2947 0.0005 9 7 4.2335 0.1408 0.0004 10 6 5.4340 0.1471 -0.6120 11 8 5.8604 1.1729 -1.1014 12 6 6.2398 -1.1079 -0.6886 13 8 5.8722 -2.1020 -0.0974 14 7 7.3750 -1.1366 -1.4145 15 6 8.2760 -2.2954 -1.3497 16 6 8.5339 -2.8034 -2.7717 17 6 9.0535 -1.6511 -3.6343 18 6 9.3403 -2.1549 -5.0253 19 1 9.1689 -3.1928 -5.2698 20 6 9.8217 -1.2908 -5.9859 21 7 10.0310 -0.0270 -5.6881 22 14 10.1780 -1.9154 -7.7099 23 1 8.9606 -1.7749 -8.5488 24 1 11.2835 -1.1226 -8.3051 25 1 10.5729 -3.3455 -7.6465 26 6 7.9979 -0.5449 -3.7006 27 6 7.7339 -0.0113 -2.2890 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.3184 4.3976 -0.0012 32 1 5.0961 2.6659 -0.0105 33 1 3.9181 -0.6636 0.4412 34 1 7.8133 -3.0853 -0.7579 35 1 9.2193 -1.9997 -0.8906 36 1 9.2765 -3.6008 -2.7440 37 1 7.6053 -3.1857 -3.1956 38 1 9.9690 -1.2535 -3.1961 39 1 10.3700 0.5808 -6.3638 40 1 8.3592 0.2652 -4.3340 41 1 7.0743 -0.9479 -4.1158 42 1 8.6326 0.4730 -1.9074 43 1 6.9154 0.7078 -2.3174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516887906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:08 Heat of formation + Delta-G solvation = -33.305033 kcal Electronic energy + Delta-G solvation = -28830.432622 eV Core-core repulsion = 24684.420240 eV Total energy + Delta-G solvation = -4146.012381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90441 -40.71907 -38.91201 -38.67042 -37.13915 -35.62238 -33.52481 -33.45178 -31.30383 -30.80612 -30.13201 -27.96362 -26.84471 -25.45645 -24.24903 -23.76622 -22.52083 -22.11128 -20.55800 -19.36134 -19.11270 -18.30488 -17.83282 -17.18831 -16.64673 -16.52613 -16.08358 -15.94134 -15.58323 -15.17667 -14.93362 -14.57453 -14.49507 -14.14537 -13.91083 -13.72653 -13.17031 -12.92589 -12.79847 -12.51452 -12.40247 -12.08760 -11.89999 -11.60670 -11.50070 -11.40391 -11.03591 -10.94198 -10.65760 -10.45625 -10.40765 -10.13106 -9.85010 -9.69274 -9.30276 -9.22534 -8.79601 -8.59037 -8.39207 -8.16866 -6.03437 -4.09995 0.42661 0.77821 1.43045 2.16392 2.42636 3.14943 3.28053 3.35315 3.38050 3.44876 3.49508 3.69255 3.95944 4.26091 4.40223 4.40334 4.66788 4.87560 4.90837 5.12752 5.25412 5.27144 5.51634 5.61118 5.78520 5.85562 6.01378 6.02497 6.16399 6.35669 6.42577 6.47000 6.56066 6.66760 6.72644 6.79516 6.95666 7.09170 7.21472 7.55062 7.59074 7.70645 7.73591 7.89894 7.99196 8.09497 8.38566 8.93201 9.55173 11.02045 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016444 B = 0.002751 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.301989 B =10176.691958 C =10666.188011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.300 6.300 3 C 0.345 3.655 4 N -0.558 5.558 5 C 0.314 3.686 6 N -0.519 5.519 7 C 0.171 3.829 8 C 0.029 3.971 9 N -0.630 5.630 10 C 0.512 3.488 11 O -0.488 6.488 12 C 0.505 3.495 13 O -0.537 6.537 14 N -0.558 5.558 15 C 0.107 3.893 16 C -0.123 4.123 17 C 0.046 3.954 18 C -0.514 4.514 19 H 0.055 0.945 20 C 0.061 3.939 21 N -0.890 5.890 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.124 4.124 27 C 0.066 3.934 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.203 0.797 32 H 0.194 0.806 33 H 0.429 0.571 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.107 0.893 41 H 0.036 0.964 42 H 0.066 0.934 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.217 3.784 13.865 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.204 6.204 3 C 0.155 3.845 4 N -0.289 5.289 5 C 0.026 3.974 6 N -0.237 5.237 7 C 0.006 3.994 8 C -0.072 4.072 9 N -0.278 5.278 10 C 0.296 3.704 11 O -0.362 6.362 12 C 0.286 3.714 13 O -0.416 6.416 14 N -0.289 5.289 15 C -0.014 4.014 16 C -0.161 4.161 17 C 0.028 3.972 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.529 5.529 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.162 4.162 27 C -0.054 4.054 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.219 0.781 32 H 0.210 0.790 33 H 0.268 0.732 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.125 0.875 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.414 4.578 13.705 21.868 hybrid contribution 0.236 -1.311 -0.918 1.617 sum -16.178 3.267 12.787 20.879 Atomic orbital electron populations 1.22996 0.76036 1.03684 1.02863 1.86242 1.23892 1.23442 1.86826 1.19955 0.87731 0.85935 0.90859 1.68128 1.40939 0.98766 1.21019 1.24738 0.88826 0.93706 0.90099 1.68525 1.06147 1.32928 1.16088 1.23661 1.02170 0.84533 0.89002 1.18713 0.88013 0.89812 1.10623 1.42918 1.17304 1.13770 1.53812 1.20731 0.81555 0.90394 0.77695 1.90563 1.68499 1.33695 1.43422 1.19461 0.82630 0.87375 0.81910 1.90733 1.69398 1.34448 1.47057 1.48234 1.19582 1.20807 1.40263 1.21930 0.92277 0.87278 0.99909 1.22017 1.00907 1.00298 0.92862 1.18679 0.93834 0.90470 0.94251 1.21178 1.43103 0.95553 0.95345 0.92708 1.24964 0.95369 0.94938 0.98697 1.69832 1.45558 1.03434 1.34033 0.86616 0.77931 0.78857 0.84717 1.20756 1.21232 1.19977 1.22045 0.98976 1.02576 0.92595 1.23103 1.03044 0.87710 0.91581 0.91837 0.91776 0.87959 0.78073 0.78954 0.73241 0.89962 0.91234 0.91735 0.92779 0.95320 0.92913 0.87499 0.94478 0.91607 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.41 101.05 1.05 1.32 16 2 O -0.30 -3.08 10.12 -18.41 -0.19 -3.27 16 3 C 0.35 3.92 7.55 -16.51 -0.12 3.80 16 4 N -0.56 -5.85 9.38 -14.48 -0.14 -5.98 16 5 C 0.31 3.01 12.28 -92.16 -1.13 1.88 16 6 N -0.52 -6.01 10.43 -14.49 -0.15 -6.16 16 7 C 0.17 2.09 9.99 -17.04 -0.17 1.92 16 8 C 0.03 0.35 6.42 -83.25 -0.53 -0.19 16 9 N -0.63 -7.74 5.25 -10.00 -0.05 -7.79 16 10 C 0.51 7.47 7.61 -11.64 -0.09 7.39 16 11 O -0.49 -7.64 10.49 5.46 0.06 -7.58 16 12 C 0.51 8.33 7.73 -11.64 -0.09 8.24 16 13 O -0.54 -9.37 15.92 5.49 0.09 -9.28 16 14 N -0.56 -9.83 2.98 -173.29 -0.52 -10.34 16 15 C 0.11 1.85 6.44 -3.71 -0.02 1.82 16 16 C -0.12 -2.43 5.30 -26.61 -0.14 -2.57 16 17 C 0.05 1.09 2.06 -91.73 -0.19 0.90 16 18 C -0.51 -13.61 8.56 -34.44 -0.29 -13.91 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 21 N -0.89 -24.52 11.31 55.43 0.63 -23.89 16 22 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.12 -2.78 5.15 -26.61 -0.14 -2.92 16 27 C 0.07 1.24 5.97 -3.69 -0.02 1.22 16 28 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.06 0.45 8.12 -51.93 -0.42 0.02 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.19 2.39 6.07 -52.49 -0.32 2.07 16 33 H 0.43 4.78 8.07 -40.82 -0.33 4.45 16 34 H 0.08 1.35 7.01 -51.93 -0.36 0.98 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.11 2.70 6.03 -51.93 -0.31 2.38 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.12 2.18 4.34 -54.69 -0.24 1.94 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -29.89 356.39 -7.24 -37.13 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.33 Total: 5.47 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -1.99 Total: 10.46 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.23 Total: -54.17 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.04 Total: -20.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.89 -7.24 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516887906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.825 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds