Wall clock time and date at job start Tue Mar 31 2020 17:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35572 * 117.00083 * 2 1 4 4 N 1.32693 * 120.55444 * 0.28734 * 3 2 1 5 5 C 1.31823 * 120.79860 * 180.33199 * 4 3 2 6 6 N 1.31761 * 121.98337 * 359.65418 * 5 4 3 7 7 C 1.32457 * 121.03268 * 0.02562 * 6 5 4 8 8 C 1.38879 * 119.07754 * 359.97438 * 7 6 5 9 9 N 1.39924 * 120.89502 * 179.97438 * 8 7 6 10 10 C 1.34772 * 119.99916 * 328.68293 * 9 8 7 11 11 O 1.21391 * 120.00294 * 3.94229 * 10 9 8 12 12 C 1.49338 * 119.99876 * 183.94340 * 10 9 8 13 13 O 1.21361 * 119.99846 * 353.35457 * 12 10 9 14 14 N 1.34780 * 119.99972 * 173.34754 * 12 10 9 15 15 C 1.46924 * 120.63243 * 171.31622 * 14 12 10 16 16 C 1.53194 * 108.89408 * 126.46448 * 15 14 12 17 17 C 1.53036 * 109.31326 * 54.56273 * 16 15 14 18 18 C 1.50694 * 109.46085 * 178.62875 * 17 16 15 19 19 H 1.07999 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99928 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00425 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00058 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47151 * 89.99910 * 22 20 18 24 24 H 1.48500 * 109.47415 * 210.00344 * 22 20 18 25 25 H 1.48500 * 109.47102 * 330.00113 * 22 20 18 26 26 C 1.53042 * 109.54162 * 298.63782 * 17 16 15 27 27 C 1.46966 * 120.65094 * 351.13733 * 14 12 10 28 28 H 1.08999 * 109.46759 * 300.00214 * 1 2 3 29 29 H 1.09003 * 109.46895 * 59.99718 * 1 2 3 30 30 H 1.08991 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.00817 * 179.67866 * 5 4 3 32 32 H 1.08000 * 120.46411 * 180.02562 * 7 6 5 33 33 H 0.96999 * 119.99746 * 148.67478 * 9 8 7 34 34 H 1.09002 * 109.58376 * 6.60924 * 15 14 12 35 35 H 1.08998 * 109.58937 * 246.32161 * 15 14 12 36 36 H 1.08995 * 109.49469 * 174.52143 * 16 15 14 37 37 H 1.09006 * 109.49753 * 294.58288 * 16 15 14 38 38 H 1.09008 * 109.45954 * 58.65806 * 17 16 15 39 39 H 0.96995 * 120.00284 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.49771 * 181.30941 * 26 17 16 41 41 H 1.08991 * 109.49597 * 301.41254 * 26 17 16 42 42 H 1.08995 * 109.46415 * 113.75222 * 27 14 12 43 43 H 1.08991 * 109.71713 * 353.46454 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2079 0.0000 4 7 1.3326 2.3277 0.0057 5 6 1.9260 3.5048 -0.0008 6 7 3.2381 3.6249 -0.0064 7 6 4.0216 2.5568 -0.0063 8 6 3.4421 1.2947 0.0005 9 7 4.2335 0.1408 0.0004 10 6 5.4340 0.1471 -0.6120 11 8 5.8604 1.1729 -1.1014 12 6 6.2398 -1.1079 -0.6886 13 8 5.8722 -2.1020 -0.0974 14 7 7.3750 -1.1366 -1.4145 15 6 8.2760 -2.2954 -1.3497 16 6 8.5339 -2.8034 -2.7717 17 6 9.0535 -1.6511 -3.6343 18 6 9.3403 -2.1549 -5.0253 19 1 9.1689 -3.1928 -5.2698 20 6 9.8217 -1.2908 -5.9859 21 7 10.0310 -0.0270 -5.6881 22 14 10.1780 -1.9154 -7.7099 23 1 8.9606 -1.7749 -8.5488 24 1 11.2835 -1.1226 -8.3051 25 1 10.5729 -3.3455 -7.6465 26 6 7.9979 -0.5449 -3.7006 27 6 7.7339 -0.0113 -2.2890 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.3184 4.3976 -0.0012 32 1 5.0961 2.6659 -0.0105 33 1 3.9181 -0.6636 0.4412 34 1 7.8133 -3.0853 -0.7579 35 1 9.2193 -1.9997 -0.8906 36 1 9.2765 -3.6008 -2.7440 37 1 7.6053 -3.1857 -3.1956 38 1 9.9690 -1.2535 -3.1961 39 1 10.3700 0.5808 -6.3638 40 1 8.3592 0.2652 -4.3340 41 1 7.0743 -0.9479 -4.1158 42 1 8.6326 0.4730 -1.9074 43 1 6.9154 0.7078 -2.3174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516887906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:07 Heat of formation + Delta-G solvation = -54.085536 kcal Electronic energy + Delta-G solvation = -28831.333732 eV Core-core repulsion = 24684.420240 eV Total energy + Delta-G solvation = -4146.913491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.85116 -41.87186 -40.07776 -39.55201 -38.64443 -36.74102 -35.28523 -34.28800 -33.06193 -31.82086 -31.66713 -28.62771 -28.43369 -26.78914 -25.20428 -24.93459 -24.14925 -23.49301 -21.84082 -20.80307 -19.89183 -19.48707 -18.88181 -18.50064 -18.22195 -17.60695 -17.45743 -17.10295 -16.53282 -16.40318 -16.27481 -15.83036 -15.46458 -15.37239 -15.11149 -14.85997 -14.70705 -14.56719 -14.38593 -13.98271 -13.45633 -13.21244 -13.06195 -12.82992 -12.80376 -12.55086 -12.48178 -12.40742 -12.32992 -12.14966 -11.94630 -11.51928 -11.27537 -11.08349 -11.01241 -10.61501 -10.44815 -10.16893 -9.73955 -9.52950 -8.07487 -6.20928 -0.48891 -0.09376 0.27114 1.00867 1.41147 1.43105 1.51980 1.67671 1.91680 2.25068 2.44028 2.61936 2.91458 3.01180 3.18985 3.19694 3.57333 3.74955 4.08292 4.24367 4.28992 4.35165 4.39348 4.41744 4.48985 4.56365 4.66443 4.73274 4.78384 4.92462 5.04974 5.13931 5.18718 5.19411 5.36963 5.43526 5.62850 5.63568 5.71046 5.90210 5.97830 6.10103 6.18821 6.38146 6.45033 6.72320 6.89482 6.91043 7.46897 8.95990 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016444 B = 0.002751 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.301989 B =10176.691958 C =10666.188011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C 0.348 3.652 4 N -0.560 5.560 5 C 0.321 3.679 6 N -0.536 5.536 7 C 0.168 3.832 8 C 0.009 3.991 9 N -0.614 5.614 10 C 0.517 3.483 11 O -0.502 6.502 12 C 0.509 3.491 13 O -0.543 6.543 14 N -0.566 5.566 15 C 0.113 3.887 16 C -0.114 4.114 17 C 0.043 3.957 18 C -0.534 4.534 19 H 0.050 0.950 20 C 0.015 3.985 21 N -0.913 5.913 22 Si 0.949 3.051 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.114 4.114 27 C 0.083 3.917 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.241 0.759 32 H 0.187 0.813 33 H 0.434 0.566 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.006 0.994 39 H 0.261 0.739 40 H 0.077 0.923 41 H 0.023 0.977 42 H 0.066 0.934 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.854 3.649 14.643 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.213 6.213 3 C 0.157 3.843 4 N -0.290 5.290 5 C 0.035 3.965 6 N -0.254 5.254 7 C 0.004 3.996 8 C -0.091 4.091 9 N -0.262 5.262 10 C 0.300 3.700 11 O -0.377 6.377 12 C 0.291 3.709 13 O -0.422 6.422 14 N -0.297 5.297 15 C -0.009 4.009 16 C -0.152 4.152 17 C 0.024 3.976 18 C -0.572 4.572 19 H 0.068 0.932 20 C -0.184 4.184 21 N -0.552 5.552 22 Si 0.775 3.225 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.153 4.153 27 C -0.038 4.038 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.256 0.744 32 H 0.204 0.796 33 H 0.274 0.726 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.092 4.420 14.509 23.609 hybrid contribution 0.613 -1.258 -1.120 1.792 sum -17.479 3.162 13.389 22.244 Atomic orbital electron populations 1.23266 0.74241 1.05418 1.03167 1.86241 1.25683 1.22978 1.86395 1.20067 0.87575 0.86626 0.89996 1.68258 1.40638 0.98774 1.21322 1.25540 0.88533 0.94660 0.87817 1.68574 1.07065 1.32706 1.17029 1.23611 1.02184 0.84962 0.88855 1.18734 0.88444 0.89459 1.12471 1.42706 1.16407 1.14219 1.52877 1.20306 0.82135 0.89403 0.78144 1.90548 1.68976 1.33733 1.44465 1.19691 0.82107 0.87913 0.81155 1.90726 1.69373 1.34999 1.47122 1.48182 1.20274 1.20563 1.40699 1.21891 0.93168 0.87609 0.98192 1.21859 1.00396 0.99076 0.93857 1.18650 0.93316 0.92003 0.93598 1.21555 1.43141 0.95455 0.97027 0.93173 1.25672 0.95413 0.95173 1.02117 1.69960 1.46057 1.04227 1.34959 0.85696 0.77695 0.78480 0.80599 1.20531 1.20933 1.19438 1.21814 0.97717 1.01234 0.94548 1.22828 1.03494 0.87955 0.89533 0.91113 0.91833 0.85608 0.74350 0.79627 0.72563 0.88526 0.89850 0.90893 0.93700 0.97570 0.92990 0.90458 0.95793 0.91530 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.41 113.37 1.18 1.56 16 2 O -0.31 -5.80 10.12 -88.79 -0.90 -6.70 16 3 C 0.35 7.35 7.55 85.00 0.64 7.99 16 4 N -0.56 -10.55 9.38 -312.43 -2.93 -13.48 16 5 C 0.32 5.45 12.28 180.89 2.22 7.67 16 6 N -0.54 -11.67 10.43 -199.74 -2.08 -13.75 16 7 C 0.17 3.99 9.99 84.75 0.85 4.83 16 8 C 0.01 0.20 6.42 38.44 0.25 0.45 16 9 N -0.61 -14.47 5.25 -303.88 -1.59 -16.07 16 10 C 0.52 14.67 7.61 87.24 0.66 15.33 16 11 O -0.50 -15.51 10.49 -3.37 -0.04 -15.54 16 12 C 0.51 16.24 7.73 87.23 0.67 16.91 16 13 O -0.54 -18.07 15.92 -3.28 -0.05 -18.12 16 14 N -0.57 -19.51 2.98 -820.52 -2.45 -21.96 16 15 C 0.11 3.74 6.44 86.36 0.56 4.30 16 16 C -0.11 -4.47 5.30 30.67 0.16 -4.31 16 17 C 0.04 2.06 2.06 -11.52 -0.02 2.03 16 18 C -0.53 -28.74 8.56 25.60 0.22 -28.52 16 19 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 20 C 0.02 0.82 5.30 84.66 0.45 1.27 16 21 N -0.91 -51.33 11.31 21.45 0.24 -51.09 16 22 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 26 C -0.11 -5.28 5.15 30.67 0.16 -5.12 16 27 C 0.08 3.12 5.97 86.36 0.52 3.64 16 28 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 29 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 30 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.24 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.19 4.59 6.07 -2.91 -0.02 4.57 16 33 H 0.43 9.14 8.07 -92.71 -0.75 8.39 16 34 H 0.10 2.97 7.01 -2.39 -0.02 2.95 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.04 1.82 8.14 -2.38 -0.02 1.81 16 38 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 39 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 40 H 0.08 4.04 6.03 -2.39 -0.01 4.03 16 41 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.13 4.65 4.34 -45.98 -0.20 4.45 16 Total: -1.00 -63.96 356.39 0.87 -63.09 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.13 Total: 20.39 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: 8.51 Total: 28.04 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -8.81 Total: -116.35 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.99 Total: -40.36 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -63.96 0.87 -63.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516887906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.005 kcal (2) G-P(sol) polarization free energy of solvation -63.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds