Wall clock time and date at job start Tue Mar 31 2020 18:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99967 * 2 1 4 4 H 1.48498 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46836 * 299.99434 * 3 2 1 6 6 H 1.48502 * 109.47139 * 59.99228 * 3 2 1 7 7 C 1.37876 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00316 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99865 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47135 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46840 * 304.99894 * 11 10 9 13 13 N 1.46903 * 109.47014 * 65.00024 * 11 10 9 14 14 C 1.50701 * 109.47328 * 185.00083 * 11 10 9 15 15 O 1.21280 * 119.99806 * 259.99868 * 14 11 10 16 16 N 1.34778 * 120.00018 * 79.99753 * 14 11 10 17 17 C 1.46375 * 119.64293 * 0.02562 * 16 14 11 18 18 C 1.53246 * 109.48518 * 114.89211 * 17 16 14 19 19 S 1.81736 * 108.79834 * 57.65304 * 18 17 16 20 20 C 1.81744 * 102.30742 * 305.46103 * 19 18 17 21 21 H 1.09007 * 109.58124 * 294.60819 * 20 19 18 22 22 C 1.50697 * 109.58321 * 174.33968 * 20 19 18 23 23 C 1.38235 * 119.99528 * 299.72149 * 22 20 19 24 24 C 1.38245 * 119.99720 * 179.77168 * 23 22 20 25 25 C 1.38231 * 119.99646 * 0.50538 * 24 23 22 26 26 C 1.38232 * 120.00522 * 359.75095 * 25 24 23 27 27 C 1.38232 * 119.99903 * 359.97438 * 26 25 24 28 28 C 1.46375 * 119.64475 * 179.97438 * 16 14 11 29 29 H 0.96996 * 120.00061 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47553 * 59.99828 * 9 7 2 31 31 H 1.08997 * 109.46964 * 299.99110 * 9 7 2 32 32 H 1.08997 * 109.47114 * 59.99912 * 10 9 7 33 33 H 1.08997 * 109.47076 * 299.99649 * 10 9 7 34 34 H 1.00897 * 110.99826 * 60.00142 * 13 11 10 35 35 H 1.00897 * 110.99746 * 183.95657 * 13 11 10 36 36 H 1.08998 * 109.47485 * 354.88463 * 17 16 14 37 37 H 1.09002 * 109.46867 * 234.88988 * 17 16 14 38 38 H 1.08999 * 109.58195 * 177.44624 * 18 17 16 39 39 H 1.08994 * 109.58275 * 297.71756 * 18 17 16 40 40 H 1.07999 * 120.00208 * 359.97438 * 23 22 20 41 41 H 1.08000 * 119.99680 * 180.23269 * 24 23 22 42 42 H 1.08001 * 119.99728 * 179.72946 * 25 24 23 43 43 H 1.08003 * 120.00381 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.00432 * 179.97438 * 27 26 25 45 45 H 1.08998 * 109.46548 * 125.10811 * 28 16 14 46 46 H 1.09000 * 109.46876 * 5.11646 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 1 0.7887 -5.0068 0.8432 13 7 0.7283 -5.1189 -1.2538 14 6 2.4551 -6.1298 0.1250 15 8 2.7866 -6.7536 -0.8608 16 7 2.9585 -6.4585 1.3313 17 6 2.5526 -5.7006 2.5160 18 6 1.7718 -6.6157 3.4655 19 16 2.8179 -8.0363 3.9018 20 6 3.2762 -8.6952 2.2711 21 1 2.3865 -9.0707 1.7656 22 6 4.2712 -9.8143 2.4400 23 6 5.4882 -9.5710 3.0489 24 6 6.3991 -10.5987 3.2081 25 6 6.0972 -11.8671 2.7491 26 6 4.8824 -12.1092 2.1354 27 6 3.9693 -11.0829 1.9813 28 6 3.9042 -7.5701 1.4427 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6243 -2.5567 0.8904 32 1 2.8721 -3.6042 0.8905 33 1 2.8720 -3.6042 -0.8895 34 1 1.3479 -5.1034 -2.0500 35 1 0.1640 -5.9553 -1.2509 36 1 1.9202 -4.8657 2.2143 37 1 3.4383 -5.3201 3.0249 38 1 1.5079 -6.0653 4.3685 39 1 0.8647 -6.9651 2.9724 40 1 5.7260 -8.5789 3.4032 41 1 7.3483 -10.4094 3.6872 42 1 6.8106 -12.6689 2.8695 43 1 4.6467 -13.1001 1.7764 44 1 3.0204 -11.2719 1.5015 45 1 4.8151 -7.2245 1.9315 46 1 4.1452 -7.9432 0.4473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591615724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:17 Heat of formation + Delta-G solvation = -34.132967 kcal Electronic energy + Delta-G solvation = -26270.082554 eV Core-core repulsion = 22670.327486 eV Total energy + Delta-G solvation = -3599.755069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59939 -40.24378 -37.76121 -36.97666 -34.92542 -34.45225 -31.97260 -31.88600 -31.68988 -30.05388 -28.05837 -26.01377 -24.89003 -24.17882 -23.42965 -22.21437 -21.91811 -20.42517 -18.99380 -18.35558 -17.85819 -17.40797 -17.26745 -16.99007 -16.49609 -16.29269 -16.22708 -15.73932 -15.41250 -15.32252 -15.02575 -14.70922 -14.49434 -14.29313 -14.20495 -13.95219 -13.80732 -13.58239 -13.48691 -13.41545 -12.91704 -12.82333 -12.53188 -12.45061 -12.23132 -12.00811 -11.89721 -11.74594 -11.64337 -11.24218 -11.01071 -10.91752 -10.48927 -10.20097 -9.85633 -9.71032 -9.62975 -8.75320 -8.13432 -6.23069 0.05463 0.46131 0.86116 1.33154 1.40094 1.41781 1.43453 1.55040 1.75399 2.44853 2.84927 3.20078 3.29309 3.46948 3.56211 3.61806 3.75749 3.85353 3.94645 4.05679 4.11204 4.13242 4.22103 4.25999 4.27238 4.40576 4.54227 4.60559 4.61046 4.72230 4.74029 4.80220 4.91579 4.99388 5.11826 5.21958 5.27313 5.52189 5.57493 5.58267 5.58975 5.84234 5.96575 5.98705 6.04958 6.15169 6.30658 6.45656 6.89491 6.95503 7.45121 8.97777 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020638 B = 0.002481 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.390116 B =11282.225039 C =11539.008939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.055 0.945 9 C 0.041 3.959 10 C -0.083 4.083 11 C 0.086 3.914 12 H 0.112 0.888 13 N -0.817 5.817 14 C 0.489 3.511 15 O -0.575 6.575 16 N -0.609 5.609 17 C 0.096 3.904 18 C -0.100 4.100 19 S -0.250 6.250 20 C -0.013 4.013 21 H 0.086 0.914 22 C -0.083 4.083 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.116 4.116 28 C 0.119 3.881 29 H 0.262 0.738 30 H 0.005 0.995 31 H -0.002 1.002 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.345 0.655 35 H 0.346 0.654 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.126 0.874 45 H 0.093 0.907 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.586 -23.636 9.649 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.203 1.203 7 C -0.578 4.578 8 H 0.073 0.927 9 C 0.004 3.996 10 C -0.121 4.121 11 C -0.030 4.030 12 H 0.130 0.870 13 N -0.346 5.346 14 C 0.277 3.723 15 O -0.454 6.454 16 N -0.341 5.341 17 C -0.028 4.028 18 C -0.248 4.248 19 S -0.020 6.020 20 C -0.142 4.142 21 H 0.104 0.896 22 C -0.085 4.085 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.136 4.136 28 C -0.006 4.006 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.016 0.984 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.159 0.841 39 H 0.107 0.893 40 H 0.147 0.853 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.161 0.839 44 H 0.144 0.856 45 H 0.111 0.889 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.492 -23.484 10.389 27.377 hybrid contribution 0.151 0.552 -1.485 1.591 sum 9.643 -22.932 8.904 26.422 Atomic orbital electron populations 1.70101 1.07540 1.27402 1.51843 1.25860 0.95666 1.02887 0.95085 0.85528 0.79106 0.79513 0.77657 1.18867 1.20869 1.20285 1.21727 0.93300 0.92650 1.50129 0.92697 1.18813 0.93758 0.91102 0.95925 1.21439 0.97811 0.91914 1.00930 1.21703 0.93651 0.92087 0.95551 0.86999 1.58997 1.27143 1.45228 1.03238 1.22588 0.81682 0.85431 0.82594 1.90633 1.61714 1.55254 1.37843 1.48101 1.44974 1.33152 1.07847 1.22140 1.01404 0.94068 0.85210 1.23967 0.99697 0.96683 1.04496 1.87085 1.65409 1.36961 1.12508 1.22306 1.00168 0.96336 0.95412 0.89588 1.19182 0.94711 0.93362 1.01272 1.21203 0.93077 1.00354 0.98222 1.21458 1.00059 0.92940 0.99823 1.21559 0.97181 0.97616 0.97286 1.21424 0.94020 0.99618 0.99227 1.21223 1.00370 0.92289 0.99732 1.21712 0.91931 0.85591 1.01340 0.92962 0.97683 0.98356 0.91173 0.94018 0.84082 0.84075 0.87436 0.88136 0.84111 0.89315 0.85271 0.83847 0.83573 0.83860 0.85635 0.88886 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.54 -29.86 9.11 25.60 0.23 -29.62 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.04 2.06 4.86 29.85 0.15 2.21 16 10 C -0.08 -3.20 4.44 30.60 0.14 -3.06 16 11 C 0.09 2.74 2.28 44.17 0.10 2.84 16 12 H 0.11 3.28 6.70 -2.39 -0.02 3.26 16 13 N -0.82 -26.98 8.44 -171.79 -1.45 -28.43 16 14 C 0.49 14.84 6.91 87.66 0.61 15.44 16 15 O -0.57 -20.62 15.55 -3.03 -0.05 -20.67 16 16 N -0.61 -14.83 2.79 -821.62 -2.29 -17.13 16 17 C 0.10 1.93 5.50 86.49 0.48 2.41 16 18 C -0.10 -1.73 6.67 72.06 0.48 -1.25 16 19 S -0.25 -4.91 21.29 -56.49 -1.20 -6.12 16 20 C -0.01 -0.26 2.95 29.91 0.09 -0.17 16 21 H 0.09 1.90 7.88 -2.38 -0.02 1.88 16 22 C -0.08 -1.60 4.80 -19.87 -0.10 -1.69 16 23 C -0.11 -1.90 8.77 22.27 0.20 -1.71 16 24 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 25 C -0.12 -1.54 10.05 22.27 0.22 -1.32 16 26 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 27 C -0.12 -2.05 9.67 22.27 0.22 -1.84 16 28 C 0.12 2.68 5.35 86.46 0.46 3.15 16 29 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.00 0.27 7.75 -2.39 -0.02 0.25 16 31 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.07 2.48 6.95 -2.39 -0.02 2.47 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.35 11.75 8.58 -89.70 -0.77 10.98 16 35 H 0.35 9.81 9.06 -89.70 -0.81 9.00 16 36 H 0.11 2.37 4.67 -2.39 -0.01 2.36 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.13 2.12 7.51 -2.91 -0.02 2.10 16 41 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 42 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 43 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.13 2.01 7.95 -2.91 -0.02 1.98 16 45 H 0.09 1.90 7.26 -2.39 -0.02 1.88 16 46 H 0.09 2.30 6.88 -2.39 -0.02 2.28 16 Total: -1.00 -68.35 381.26 0.91 -67.44 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.58 Total: 31.50 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.18 Total: -17.12 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -3.46 Total: -100.82 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -4.91 SS G_CDS: -1.20 Total: -6.12 kcal Total: -68.35 0.91 -67.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591615724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.309 kcal (2) G-P(sol) polarization free energy of solvation -68.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds