Wall clock time and date at job start Tue Mar 31 2020 18:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86811 * 119.99671 * 2 1 4 4 H 1.48495 * 109.47164 * 270.00020 * 3 2 1 5 5 H 1.48496 * 109.47163 * 30.00213 * 3 2 1 6 6 H 1.48503 * 109.46735 * 149.99788 * 3 2 1 7 7 C 1.37878 * 120.00581 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99659 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47141 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47279 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47356 * 54.99672 * 11 10 9 13 13 N 1.46904 * 109.47171 * 295.00010 * 11 10 9 14 14 C 1.50699 * 109.47252 * 174.99717 * 11 10 9 15 15 O 1.21287 * 119.99942 * 100.00123 * 14 11 10 16 16 N 1.34775 * 120.00079 * 279.99693 * 14 11 10 17 17 C 1.46373 * 119.64453 * 0.02562 * 16 14 11 18 18 C 1.53243 * 109.49013 * 114.88815 * 17 16 14 19 19 S 1.81743 * 108.91088 * 57.58363 * 18 17 16 20 20 C 1.81781 * 102.28945 * 305.64393 * 19 18 17 21 21 H 1.08997 * 109.58100 * 294.49555 * 20 19 18 22 22 C 1.50707 * 109.59057 * 174.21789 * 20 19 18 23 23 C 1.38230 * 119.99855 * 300.27973 * 22 20 19 24 24 C 1.38249 * 119.99603 * 179.76762 * 23 22 20 25 25 C 1.38238 * 119.99762 * 0.48140 * 24 23 22 26 26 C 1.38233 * 119.99832 * 359.79341 * 25 24 23 27 27 C 1.38230 * 120.00261 * 359.95396 * 26 25 24 28 28 C 1.46375 * 119.64775 * 179.97438 * 16 14 11 29 29 H 0.96998 * 120.00567 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47409 * 59.99908 * 9 7 2 31 31 H 1.09005 * 109.46747 * 300.00042 * 9 7 2 32 32 H 1.09007 * 109.47071 * 59.99555 * 10 9 7 33 33 H 1.09003 * 109.46833 * 300.00014 * 10 9 7 34 34 H 1.00898 * 110.99610 * 176.04681 * 13 11 10 35 35 H 1.00899 * 110.99598 * 299.99824 * 13 11 10 36 36 H 1.08992 * 109.47487 * 354.87932 * 17 16 14 37 37 H 1.09004 * 109.47004 * 234.88683 * 17 16 14 38 38 H 1.09002 * 109.58481 * 177.44854 * 18 17 16 39 39 H 1.09005 * 109.58123 * 297.72258 * 18 17 16 40 40 H 1.08000 * 120.00739 * 359.97438 * 23 22 20 41 41 H 1.07997 * 119.99791 * 180.25628 * 24 23 22 42 42 H 1.07993 * 119.99620 * 179.76986 * 25 24 23 43 43 H 1.08006 * 119.99303 * 179.97438 * 26 25 24 44 44 H 1.08005 * 119.99798 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.46917 * 5.11928 * 28 16 14 46 46 H 1.09002 * 109.47112 * 125.10981 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 1 0.7887 -5.0069 -0.8441 13 7 0.7282 -5.1187 1.2529 14 6 2.4552 -6.1297 -0.1256 15 8 2.7867 -6.7534 0.8603 16 7 2.9586 -6.4586 -1.3318 17 6 2.5536 -5.7003 -2.5165 18 6 3.7660 -4.9562 -3.0865 19 16 5.0690 -6.1626 -3.4734 20 6 5.2694 -7.0363 -1.8919 21 1 5.6577 -6.3481 -1.1411 22 6 6.2282 -8.1857 -2.0676 23 6 5.9444 -9.1901 -2.9738 24 6 6.8262 -10.2420 -3.1383 25 6 7.9870 -10.2944 -2.3894 26 6 8.2679 -9.2927 -1.4791 27 6 7.3887 -8.2383 -1.3184 28 6 3.9052 -7.5695 -1.4430 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5563 -0.8919 31 1 0.6241 -2.5574 0.8881 32 1 2.8715 -3.6046 0.8891 33 1 2.8727 -3.6038 -0.8910 34 1 0.1640 -5.9551 1.2501 35 1 1.3478 -5.1031 2.0492 36 1 1.7823 -4.9809 -2.2414 37 1 2.1606 -6.3842 -3.2689 38 1 3.4764 -4.4274 -3.9945 39 1 4.1358 -4.2425 -2.3502 40 1 5.0353 -9.1516 -3.5557 41 1 6.6065 -11.0247 -3.8493 42 1 8.6741 -11.1180 -2.5153 43 1 9.1747 -9.3339 -0.8937 44 1 7.6085 -7.4555 -0.6074 45 1 4.0074 -8.0580 -0.4740 46 1 3.5375 -8.2883 -2.1752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591615732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:22 Heat of formation + Delta-G solvation = -15.229048 kcal Electronic energy + Delta-G solvation = -26488.646943 eV Core-core repulsion = 22889.711610 eV Total energy + Delta-G solvation = -3598.935333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.44404 -39.51098 -36.66035 -35.49109 -33.70585 -32.84275 -31.21028 -30.77365 -30.17946 -29.10297 -26.52554 -24.64064 -23.80083 -23.09488 -22.52838 -21.32599 -20.48941 -19.16883 -17.77056 -17.10641 -16.59739 -16.38378 -16.11331 -15.62701 -15.47783 -15.34439 -14.69138 -14.57236 -14.44314 -14.23079 -13.94196 -13.60255 -13.53528 -13.30029 -13.03896 -12.81502 -12.61542 -12.36089 -12.13601 -11.99935 -11.74030 -11.52433 -11.33071 -11.05981 -10.93193 -10.73510 -10.59209 -10.17102 -10.04906 -9.83460 -9.44267 -9.24632 -9.17180 -9.05975 -8.86451 -8.42404 -8.27511 -7.82065 -5.98545 -4.01074 0.81433 1.12846 1.69332 2.29662 2.56366 2.83085 3.31399 3.38466 3.41526 3.53644 4.29661 4.39358 4.45308 4.50511 4.62787 4.72374 4.75807 4.85254 4.87786 4.90492 4.95677 5.10559 5.20582 5.25701 5.34560 5.37756 5.44774 5.53246 5.56690 5.65586 5.68506 5.72618 5.76548 6.15319 6.22936 6.27949 6.28689 6.34288 6.55590 6.69137 6.97541 7.14860 7.39393 7.69079 7.71324 7.89239 8.06646 8.10047 8.42400 9.06601 9.62596 11.12211 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016487 B = 0.002828 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.869643 B = 9898.693420 C =10549.271888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.051 0.949 9 C 0.033 3.967 10 C -0.097 4.097 11 C 0.077 3.923 12 H 0.100 0.900 13 N -0.806 5.806 14 C 0.485 3.515 15 O -0.547 6.547 16 N -0.617 5.617 17 C 0.102 3.898 18 C -0.106 4.106 19 S -0.244 6.244 20 C -0.026 4.026 21 H 0.098 0.902 22 C -0.066 4.066 23 C -0.098 4.098 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.101 4.101 28 C 0.117 3.883 29 H 0.260 0.740 30 H 0.013 0.987 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.335 0.665 35 H 0.348 0.652 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.903 -20.504 -7.791 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.135 4.135 11 C -0.039 4.039 12 H 0.118 0.882 13 N -0.334 5.334 14 C 0.273 3.727 15 O -0.424 6.424 16 N -0.350 5.350 17 C -0.022 4.022 18 C -0.255 4.255 19 S -0.015 6.015 20 C -0.155 4.155 21 H 0.116 0.884 22 C -0.068 4.068 23 C -0.118 4.118 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.120 4.120 28 C -0.008 4.008 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.140 0.860 39 H 0.115 0.885 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.121 0.879 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.061 -20.112 -8.439 24.455 hybrid contribution 0.559 0.373 1.090 1.280 sum 11.619 -19.740 -7.349 24.056 Atomic orbital electron populations 1.69962 1.05943 1.26490 1.50668 1.24978 0.94791 0.99040 0.95403 0.86668 0.79918 0.83803 0.78037 1.20732 1.21229 1.19979 1.21239 0.92835 0.91245 1.50815 0.93046 1.19005 0.93460 0.89728 0.98232 1.21732 0.98965 0.92122 1.00725 1.21924 0.93555 0.93264 0.95154 0.88199 1.59010 1.26856 1.44319 1.03194 1.22928 0.82149 0.85621 0.82047 1.90643 1.61155 1.54043 1.36599 1.48119 1.45211 1.33484 1.08221 1.21936 0.96626 0.96095 0.87591 1.24001 0.96227 0.99103 1.06202 1.86991 1.52065 1.43882 1.18514 1.22475 0.97723 0.97722 0.97626 0.88389 1.19150 0.95070 0.94691 0.97875 1.21064 0.99814 0.93496 0.97407 1.21144 0.94587 0.98370 0.99742 1.21200 0.97293 0.98737 0.96326 1.21130 0.99477 0.94417 0.98769 1.21072 0.93431 0.98561 0.98968 1.21663 0.86240 0.88969 1.03889 0.93045 0.96884 0.94637 0.92830 0.92793 0.85369 0.83775 0.87064 0.89805 0.86026 0.88490 0.85482 0.85856 0.86031 0.85829 0.85849 0.87888 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 9 C 0.03 0.80 4.86 -27.88 -0.14 0.67 16 10 C -0.10 -1.87 4.51 -26.74 -0.12 -1.99 16 11 C 0.08 1.23 2.29 -68.87 -0.16 1.07 16 12 H 0.10 1.49 6.50 -51.92 -0.34 1.15 16 13 N -0.81 -13.16 8.44 -5.65 -0.05 -13.21 16 14 C 0.48 7.42 6.90 -10.99 -0.08 7.34 16 15 O -0.55 -9.77 15.55 5.55 0.09 -9.69 16 16 N -0.62 -7.76 2.79 -173.62 -0.48 -8.24 16 17 C 0.10 1.11 5.48 -3.98 -0.02 1.09 16 18 C -0.11 -1.18 6.51 37.28 0.24 -0.94 16 19 S -0.24 -2.81 21.29 -107.50 -2.29 -5.10 16 20 C -0.03 -0.30 2.94 -27.78 -0.08 -0.38 16 21 H 0.10 1.24 7.88 -51.93 -0.41 0.83 16 22 C -0.07 -0.69 4.80 -104.62 -0.50 -1.19 16 23 C -0.10 -0.93 8.76 -39.58 -0.35 -1.28 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.12 -1.03 10.05 -39.59 -0.40 -1.42 16 27 C -0.10 -1.00 9.67 -39.59 -0.38 -1.38 16 28 C 0.12 1.36 5.36 -4.01 -0.02 1.34 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.96 7.75 -51.93 -0.40 0.55 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.97 5.75 -51.93 -0.30 0.67 16 34 H 0.33 4.73 9.06 -39.29 -0.36 4.37 16 35 H 0.35 5.80 8.58 -39.29 -0.34 5.47 16 36 H 0.11 1.27 4.95 -51.93 -0.26 1.01 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.10 1.24 6.89 -51.93 -0.36 0.88 16 40 H 0.13 1.10 7.55 -52.49 -0.40 0.70 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 44 H 0.12 1.14 7.95 -52.48 -0.42 0.72 16 45 H 0.10 1.35 6.88 -51.93 -0.36 1.00 16 46 H 0.08 0.82 7.30 -51.93 -0.38 0.44 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -31.81 378.85 -11.32 -43.14 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.81 Total: 9.49 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -3.21 Total: -12.89 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.20 Total: -47.05 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.29 Total: -5.10 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.81 -11.32 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591615732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.909 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds