Wall clock time and date at job start Tue Mar 31 2020 18:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86811 * 119.99671 * 2 1 4 4 H 1.48495 * 109.47164 * 270.00020 * 3 2 1 5 5 H 1.48496 * 109.47163 * 30.00213 * 3 2 1 6 6 H 1.48503 * 109.46735 * 149.99788 * 3 2 1 7 7 C 1.37878 * 120.00581 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00288 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99659 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47141 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47279 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.47356 * 54.99672 * 11 10 9 13 13 N 1.46904 * 109.47171 * 295.00010 * 11 10 9 14 14 C 1.50699 * 109.47252 * 174.99717 * 11 10 9 15 15 O 1.21287 * 119.99942 * 100.00123 * 14 11 10 16 16 N 1.34775 * 120.00079 * 279.99693 * 14 11 10 17 17 C 1.46373 * 119.64453 * 0.02562 * 16 14 11 18 18 C 1.53243 * 109.49013 * 114.88815 * 17 16 14 19 19 S 1.81743 * 108.91088 * 57.58363 * 18 17 16 20 20 C 1.81781 * 102.28945 * 305.64393 * 19 18 17 21 21 H 1.08997 * 109.58100 * 294.49555 * 20 19 18 22 22 C 1.50707 * 109.59057 * 174.21789 * 20 19 18 23 23 C 1.38230 * 119.99855 * 300.27973 * 22 20 19 24 24 C 1.38249 * 119.99603 * 179.76762 * 23 22 20 25 25 C 1.38238 * 119.99762 * 0.48140 * 24 23 22 26 26 C 1.38233 * 119.99832 * 359.79341 * 25 24 23 27 27 C 1.38230 * 120.00261 * 359.95396 * 26 25 24 28 28 C 1.46375 * 119.64775 * 179.97438 * 16 14 11 29 29 H 0.96998 * 120.00567 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47409 * 59.99908 * 9 7 2 31 31 H 1.09005 * 109.46747 * 300.00042 * 9 7 2 32 32 H 1.09007 * 109.47071 * 59.99555 * 10 9 7 33 33 H 1.09003 * 109.46833 * 300.00014 * 10 9 7 34 34 H 1.00898 * 110.99610 * 176.04681 * 13 11 10 35 35 H 1.00899 * 110.99598 * 299.99824 * 13 11 10 36 36 H 1.08992 * 109.47487 * 354.87932 * 17 16 14 37 37 H 1.09004 * 109.47004 * 234.88683 * 17 16 14 38 38 H 1.09002 * 109.58481 * 177.44854 * 18 17 16 39 39 H 1.09005 * 109.58123 * 297.72258 * 18 17 16 40 40 H 1.08000 * 120.00739 * 359.97438 * 23 22 20 41 41 H 1.07997 * 119.99791 * 180.25628 * 24 23 22 42 42 H 1.07993 * 119.99620 * 179.76986 * 25 24 23 43 43 H 1.08006 * 119.99303 * 179.97438 * 26 25 24 44 44 H 1.08005 * 119.99798 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.46917 * 5.11928 * 28 16 14 46 46 H 1.09002 * 109.47112 * 125.10981 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9870 -0.0020 12 1 0.7887 -5.0069 -0.8441 13 7 0.7282 -5.1187 1.2529 14 6 2.4552 -6.1297 -0.1256 15 8 2.7867 -6.7534 0.8603 16 7 2.9586 -6.4586 -1.3318 17 6 2.5536 -5.7003 -2.5165 18 6 3.7660 -4.9562 -3.0865 19 16 5.0690 -6.1626 -3.4734 20 6 5.2694 -7.0363 -1.8919 21 1 5.6577 -6.3481 -1.1411 22 6 6.2282 -8.1857 -2.0676 23 6 5.9444 -9.1901 -2.9738 24 6 6.8262 -10.2420 -3.1383 25 6 7.9870 -10.2944 -2.3894 26 6 8.2679 -9.2927 -1.4791 27 6 7.3887 -8.2383 -1.3184 28 6 3.9052 -7.5695 -1.4430 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5563 -0.8919 31 1 0.6241 -2.5574 0.8881 32 1 2.8715 -3.6046 0.8891 33 1 2.8727 -3.6038 -0.8910 34 1 0.1640 -5.9551 1.2501 35 1 1.3478 -5.1031 2.0492 36 1 1.7823 -4.9809 -2.2414 37 1 2.1606 -6.3842 -3.2689 38 1 3.4764 -4.4274 -3.9945 39 1 4.1358 -4.2425 -2.3502 40 1 5.0353 -9.1516 -3.5557 41 1 6.6065 -11.0247 -3.8493 42 1 8.6741 -11.1180 -2.5153 43 1 9.1747 -9.3339 -0.8937 44 1 7.6085 -7.4555 -0.6074 45 1 4.0074 -8.0580 -0.4740 46 1 3.5375 -8.2883 -2.1752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591615732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:21 Heat of formation + Delta-G solvation = -33.854907 kcal Electronic energy + Delta-G solvation = -26489.454621 eV Core-core repulsion = 22889.711610 eV Total energy + Delta-G solvation = -3599.743011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60408 -40.24213 -37.74656 -36.99405 -34.92938 -34.44684 -31.98015 -31.87670 -31.68246 -30.04595 -28.09369 -25.99617 -24.87724 -24.17033 -23.42120 -22.22735 -22.03706 -20.32506 -18.98097 -18.36033 -17.80980 -17.50241 -17.39949 -16.80574 -16.47170 -16.39340 -16.21882 -15.63558 -15.58425 -15.32978 -14.91044 -14.74437 -14.42166 -14.28179 -14.21163 -13.99669 -13.84201 -13.61216 -13.49955 -13.37463 -12.92617 -12.80648 -12.52730 -12.46240 -12.23289 -12.00783 -11.89245 -11.77354 -11.63421 -11.25472 -11.02569 -10.91603 -10.49015 -10.20127 -9.85532 -9.70735 -9.62823 -8.75152 -8.14229 -6.23892 0.06081 0.46187 0.85987 1.32453 1.39207 1.41237 1.42436 1.52557 1.77288 2.43673 2.85034 3.19209 3.29258 3.46812 3.56609 3.63090 3.76645 3.85261 3.95780 4.02809 4.11118 4.13441 4.21428 4.27212 4.29470 4.41602 4.53472 4.60292 4.61999 4.65906 4.73472 4.84404 4.91438 4.99416 5.12081 5.21894 5.27390 5.52360 5.56623 5.58185 5.58916 5.83348 5.96833 5.97768 6.05215 6.15246 6.29681 6.46611 6.89657 6.94266 7.44209 8.96747 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016487 B = 0.002828 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.869643 B = 9898.693420 C =10549.271888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.005 3.995 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.043 3.957 10 C -0.082 4.082 11 C 0.085 3.915 12 H 0.116 0.884 13 N -0.817 5.817 14 C 0.489 3.511 15 O -0.575 6.575 16 N -0.609 5.609 17 C 0.100 3.900 18 C -0.105 4.105 19 S -0.245 6.245 20 C -0.018 4.018 21 H 0.077 0.923 22 C -0.082 4.082 23 C -0.107 4.107 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.120 4.120 28 C 0.122 3.878 29 H 0.262 0.738 30 H -0.001 1.001 31 H 0.005 0.995 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.347 0.653 35 H 0.345 0.655 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.076 0.924 40 H 0.134 0.866 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.142 0.858 44 H 0.120 0.880 45 H 0.086 0.914 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.077 -21.647 -9.393 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.579 4.579 8 H 0.071 0.929 9 C 0.006 3.994 10 C -0.120 4.120 11 C -0.031 4.031 12 H 0.133 0.867 13 N -0.346 5.346 14 C 0.277 3.723 15 O -0.455 6.455 16 N -0.341 5.341 17 C -0.024 4.024 18 C -0.254 4.254 19 S -0.015 6.015 20 C -0.147 4.147 21 H 0.095 0.905 22 C -0.084 4.084 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.140 4.140 28 C -0.003 4.003 29 H 0.071 0.929 30 H 0.017 0.983 31 H 0.023 0.977 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.158 0.842 39 H 0.095 0.905 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.159 0.841 44 H 0.138 0.862 45 H 0.105 0.895 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.248 -21.267 -10.077 26.530 hybrid contribution 0.231 0.675 1.563 1.718 sum 12.479 -20.592 -8.514 25.539 Atomic orbital electron populations 1.70083 1.07498 1.27479 1.51696 1.25827 0.95637 1.02768 0.95052 0.85614 0.78621 0.79310 0.78496 1.19581 1.21015 1.19368 1.21672 0.93183 0.92687 1.50347 0.92899 1.18794 0.93705 0.90982 0.95958 1.21438 0.97808 0.92105 1.00632 1.21724 0.93738 0.91960 0.95682 0.86674 1.58997 1.27123 1.45326 1.03179 1.22591 0.81977 0.85255 0.82526 1.90635 1.62080 1.55008 1.37745 1.48126 1.44585 1.33483 1.07916 1.22111 0.96391 0.96502 0.87362 1.24005 0.96145 0.98795 1.06463 1.86989 1.52353 1.43772 1.18402 1.22345 0.97668 0.97752 0.96929 0.90498 1.19168 0.95294 0.94929 0.99025 1.21206 1.00485 0.93618 0.97286 1.21478 0.94270 0.98413 0.99912 1.21563 0.97551 0.99032 0.95458 1.21408 0.99802 0.94050 0.99074 1.21216 0.93997 0.99372 0.99394 1.21715 0.86256 0.88725 1.03611 0.92923 0.98270 0.97671 0.94386 0.91396 0.83919 0.84174 0.87450 0.87020 0.84249 0.90484 0.84829 0.83517 0.83478 0.84053 0.86209 0.89526 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 2 C 0.01 0.30 5.46 84.66 0.46 0.76 16 3 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.54 -29.97 9.11 25.60 0.23 -29.73 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 9 C 0.04 2.14 4.86 29.85 0.15 2.29 16 10 C -0.08 -3.17 4.51 30.59 0.14 -3.04 16 11 C 0.08 2.70 2.29 44.17 0.10 2.80 16 12 H 0.12 3.34 6.50 -2.38 -0.02 3.32 16 13 N -0.82 -26.98 8.44 -171.80 -1.45 -28.43 16 14 C 0.49 14.83 6.90 87.66 0.61 15.44 16 15 O -0.58 -20.68 15.55 -3.05 -0.05 -20.73 16 16 N -0.61 -14.76 2.79 -821.60 -2.29 -17.06 16 17 C 0.10 2.00 5.48 86.48 0.47 2.47 16 18 C -0.11 -2.21 6.51 72.06 0.47 -1.74 16 19 S -0.25 -5.35 21.29 -56.49 -1.20 -6.55 16 20 C -0.02 -0.39 2.94 29.92 0.09 -0.30 16 21 H 0.08 2.01 7.88 -2.39 -0.02 2.00 16 22 C -0.08 -1.67 4.80 -19.87 -0.10 -1.77 16 23 C -0.11 -1.84 8.76 22.27 0.19 -1.64 16 24 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 25 C -0.12 -1.58 10.05 22.27 0.22 -1.36 16 26 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 27 C -0.12 -2.35 9.67 22.27 0.22 -2.14 16 28 C 0.12 2.72 5.36 86.47 0.46 3.18 16 29 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.00 0.27 7.75 -2.38 -0.02 0.25 16 32 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.07 2.43 5.75 -2.39 -0.01 2.42 16 34 H 0.35 9.78 9.06 -89.70 -0.81 8.96 16 35 H 0.34 11.77 8.58 -89.69 -0.77 11.00 16 36 H 0.11 2.28 4.95 -2.39 -0.01 2.27 16 37 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 38 H 0.14 2.42 8.14 -2.39 -0.02 2.41 16 39 H 0.08 1.94 6.89 -2.39 -0.02 1.92 16 40 H 0.13 2.04 7.55 -2.91 -0.02 2.02 16 41 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.12 2.30 7.95 -2.91 -0.02 2.28 16 45 H 0.09 2.28 6.88 -2.39 -0.02 2.26 16 46 H 0.10 1.86 7.30 -2.39 -0.02 1.84 16 Total: -1.00 -68.70 378.85 0.91 -67.79 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.58 Total: 32.25 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 4.17 Total: -18.02 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -3.46 Total: -100.67 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.20 Total: -6.55 kcal Total: -68.70 0.91 -67.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591615732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.938 kcal (2) G-P(sol) polarization free energy of solvation -68.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds