Wall clock time and date at job start Tue Mar 31 2020 18:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48489 * 109.47084 * 270.00048 * 3 2 1 5 5 H 1.48506 * 109.46999 * 29.99766 * 3 2 1 6 6 H 1.48498 * 109.47385 * 149.99583 * 3 2 1 7 7 C 1.37885 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99757 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.64151 * 298.30353 * 9 7 2 11 11 C 1.55158 * 110.71520 * 174.97092 * 9 7 2 12 12 C 1.55130 * 101.48469 * 205.96782 * 11 9 7 13 13 N 1.47424 * 104.72330 * 37.29293 * 12 11 9 14 14 C 1.34781 * 125.64742 * 155.81328 * 13 12 11 15 15 O 1.21582 * 120.00143 * 179.69416 * 14 13 12 16 16 N 1.34779 * 119.99894 * 359.69833 * 14 13 12 17 17 C 1.46495 * 119.99996 * 179.97438 * 16 14 13 18 18 H 1.09007 * 110.26633 * 35.62300 * 17 16 14 19 19 C 1.54342 * 110.30649 * 157.79868 * 17 16 14 20 20 C 1.54340 * 102.38969 * 92.56417 * 19 17 16 21 21 C 1.51377 * 105.17285 * 26.36179 * 20 19 17 22 22 C 1.38461 * 130.37025 * 162.80368 * 21 20 19 23 23 C 1.38321 * 120.19643 * 180.02562 * 22 21 20 24 24 F 1.35104 * 120.06179 * 180.02562 * 23 22 21 25 25 C 1.38486 * 119.87988 * 0.27942 * 23 22 21 26 26 C 1.38055 * 119.90511 * 359.42332 * 25 23 22 27 27 C 1.38231 * 109.75503 * 342.80880 * 21 20 19 28 28 C 1.47019 * 108.70242 * 335.55755 * 13 12 11 29 29 H 0.96996 * 119.99865 * 359.97438 * 1 2 3 30 30 H 0.96705 * 113.99847 * 61.69037 * 10 9 7 31 31 H 1.09000 * 111.00567 * 324.20874 * 11 9 7 32 32 H 1.09005 * 111.00714 * 88.02186 * 11 9 7 33 33 H 1.09002 * 110.49769 * 278.45489 * 12 11 9 34 34 H 1.09003 * 110.34623 * 156.06221 * 12 11 9 35 35 H 0.97004 * 119.99824 * 359.97438 * 16 14 13 36 36 H 1.08994 * 110.82472 * 210.79614 * 19 17 16 37 37 H 1.09007 * 110.81703 * 334.14867 * 19 17 16 38 38 H 1.09003 * 110.31200 * 267.43368 * 20 19 17 39 39 H 1.09009 * 110.30456 * 145.28403 * 20 19 17 40 40 H 1.08007 * 119.90419 * 0.02860 * 22 21 20 41 41 H 1.08003 * 120.04399 * 179.72601 * 25 23 22 42 42 H 1.07997 * 119.87810 * 180.25537 * 26 25 23 43 43 H 1.09004 * 109.88098 * 120.70137 * 28 13 12 44 44 H 1.08998 * 109.88297 * 241.71221 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4495 -2.6181 1.1776 11 6 2.2284 -3.6974 -0.1260 12 6 1.3164 -4.7732 -0.7722 13 7 0.4651 -4.0253 -1.7152 14 6 -0.1404 -4.5392 -2.8042 15 8 -0.8270 -3.8270 -3.5110 16 7 0.0152 -5.8427 -3.1096 17 6 -0.6434 -6.4014 -4.2929 18 1 -0.6618 -5.6660 -5.0973 19 6 0.0811 -7.6840 -4.7536 20 6 -0.7025 -8.7901 -4.0157 21 6 -2.0848 -8.2148 -3.7925 22 6 -3.2771 -8.8431 -3.4752 23 6 -4.4339 -8.1013 -3.3177 24 9 -5.5958 -8.7170 -3.0076 25 6 -4.4001 -6.7268 -3.4838 26 6 -3.2098 -6.1001 -3.7941 27 6 -2.0509 -6.8422 -3.9519 28 6 0.3809 -2.6274 -1.2676 29 1 -0.4850 0.8400 0.0004 30 1 -0.2286 -1.9338 1.2625 31 1 3.0676 -3.4501 -0.7762 32 1 2.5786 -4.0213 0.8541 33 1 0.7043 -5.2605 -0.0133 34 1 1.9178 -5.5092 -1.3058 35 1 0.5632 -6.4108 -2.5458 36 1 0.0015 -7.8073 -5.8336 37 1 1.1258 -7.6718 -4.4426 38 1 -0.2284 -9.0169 -3.0607 39 1 -0.7613 -9.6874 -4.6321 40 1 -3.3041 -9.9155 -3.3502 41 1 -5.3027 -6.1455 -3.3658 42 1 -3.1831 -5.0277 -3.9194 43 1 0.7605 -1.9654 -2.0461 44 1 -0.6537 -2.3735 -1.0373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591928998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:55 Heat of formation + Delta-G solvation = -93.855742 kcal Electronic energy + Delta-G solvation = -28972.629658 eV Core-core repulsion = 24804.071639 eV Total energy + Delta-G solvation = -4168.558019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.00667 -40.64044 -39.29648 -37.40355 -35.92256 -34.27252 -33.12396 -32.22756 -31.11997 -29.85549 -28.97884 -27.84202 -26.73382 -24.85360 -23.11803 -22.72541 -21.31613 -20.91817 -19.75714 -19.50756 -17.68220 -17.20840 -17.08283 -16.60090 -16.26477 -15.81974 -15.66864 -15.27198 -14.90287 -14.57330 -14.45460 -14.19376 -13.92735 -13.69545 -13.27446 -13.01551 -12.94090 -12.86164 -12.57502 -12.27902 -12.15405 -11.90690 -11.70155 -11.46347 -11.42644 -11.20940 -11.04306 -10.95891 -10.81982 -10.68387 -10.49948 -10.18255 -9.66670 -9.32134 -9.05915 -8.95294 -8.68476 -8.62411 -8.31965 -7.78834 -6.28284 -4.36916 0.98033 1.12040 3.02843 3.21487 3.28913 3.31438 3.53271 3.68017 3.89086 4.26425 4.29447 4.37224 4.43412 4.74688 4.83105 4.83543 4.97860 4.99506 5.08541 5.34823 5.39345 5.50052 5.55859 5.59718 5.67710 5.70574 5.76381 5.86634 5.94590 5.98887 6.00585 6.09037 6.20614 6.46252 6.49465 6.69884 6.70303 6.78957 6.87652 6.96787 7.24866 7.31089 7.61491 7.73056 8.03415 8.49776 8.66769 9.09255 9.29196 9.37919 10.79476 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.002868 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.707090 B = 9759.396195 C =10289.587290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.115 4.115 12 C 0.103 3.897 13 N -0.629 5.629 14 C 0.717 3.283 15 O -0.594 6.594 16 N -0.741 5.741 17 C 0.204 3.796 18 H 0.098 0.902 19 C -0.126 4.126 20 C -0.082 4.082 21 C -0.064 4.064 22 C -0.150 4.150 23 C 0.101 3.899 24 F -0.142 7.142 25 C -0.158 4.158 26 C -0.052 4.052 27 C -0.117 4.117 28 C 0.124 3.876 29 H 0.270 0.730 30 H 0.382 0.618 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.393 0.607 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.064 0.936 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 -17.863 -7.840 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.153 4.153 12 C -0.020 4.020 13 N -0.366 5.366 14 C 0.419 3.581 15 O -0.473 6.473 16 N -0.397 5.397 17 C 0.098 3.902 18 H 0.116 0.884 19 C -0.164 4.164 20 C -0.119 4.119 21 C -0.065 4.065 22 C -0.169 4.169 23 C 0.081 3.919 24 F -0.120 7.120 25 C -0.177 4.177 26 C -0.070 4.070 27 C -0.119 4.119 28 C 0.002 3.998 29 H 0.080 0.920 30 H 0.233 0.767 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.228 0.772 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.157 0.843 43 H 0.082 0.918 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.181 -17.738 -8.307 19.708 hybrid contribution -0.131 1.039 0.313 1.093 sum -2.312 -16.700 -7.994 18.658 Atomic orbital electron populations 1.69697 1.05979 1.27914 1.49578 1.25074 0.95047 0.99751 0.93392 0.86408 0.79794 0.82466 0.78275 1.20427 1.20999 1.19717 1.21491 0.93632 0.90097 1.52391 0.91579 1.19500 0.86553 0.91998 0.81227 1.86102 1.51784 1.56619 1.44871 1.22758 0.97351 0.95103 1.00132 1.22279 0.92746 0.95105 0.91903 1.47976 1.50861 1.13058 1.24722 1.15518 0.80246 0.81446 0.80918 1.90866 1.44655 1.59451 1.52356 1.45174 1.55151 1.09202 1.30159 1.20033 0.86740 0.95315 0.88147 0.88369 1.22589 0.99703 0.92853 1.01240 1.21099 0.90835 0.98649 1.01304 1.20378 0.94412 0.94366 0.97303 1.20434 0.90940 1.00359 1.05185 1.17531 0.81617 0.91010 1.01704 1.91490 1.46693 1.83260 1.90589 1.21100 0.99806 0.92681 1.04097 1.20736 0.90296 1.01005 0.94968 1.21017 0.95852 0.93740 1.01267 1.22853 1.01414 0.77223 0.98312 0.92004 0.76749 0.90464 0.90660 0.92051 0.92663 0.77240 0.89247 0.89411 0.89700 0.90052 0.85116 0.84596 0.84316 0.91774 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.67 10.97 55.43 0.61 -23.06 16 2 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.88 8.12 -34.44 -0.28 -14.16 16 8 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 9 C 0.25 5.88 0.85 -89.94 -0.08 5.80 16 10 O -0.58 -14.51 13.08 -35.23 -0.46 -14.97 16 11 C -0.12 -2.22 6.24 -24.46 -0.15 -2.38 16 12 C 0.10 1.73 6.58 -2.41 -0.02 1.72 16 13 N -0.63 -12.62 3.32 -176.10 -0.59 -13.21 16 14 C 0.72 13.80 8.48 -86.91 -0.74 13.06 16 15 O -0.59 -13.50 16.18 5.29 0.09 -13.41 16 16 N -0.74 -10.37 5.07 -58.79 -0.30 -10.67 16 17 C 0.20 2.46 3.17 -68.05 -0.22 2.24 16 18 H 0.10 1.34 7.64 -51.93 -0.40 0.94 16 19 C -0.13 -0.98 6.66 -25.33 -0.17 -1.15 16 20 C -0.08 -0.62 6.77 -26.85 -0.18 -0.80 16 21 C -0.06 -0.68 6.14 -104.21 -0.64 -1.32 16 22 C -0.15 -1.63 10.02 -39.47 -0.40 -2.03 16 23 C 0.10 1.23 7.30 -39.46 -0.29 0.95 16 24 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 25 C -0.16 -1.99 10.03 -39.56 -0.40 -2.39 16 26 C -0.05 -0.71 10.04 -39.55 -0.40 -1.11 16 27 C -0.12 -1.49 5.76 -104.19 -0.60 -2.09 16 28 C 0.12 2.97 5.23 -3.07 -0.02 2.95 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.38 9.75 7.45 45.56 0.34 10.09 16 31 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.72 7.29 -51.93 -0.38 0.35 16 35 H 0.39 4.57 7.06 -40.82 -0.29 4.28 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.58 8.05 -51.92 -0.42 0.16 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 41 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.14 2.12 7.87 -52.49 -0.41 1.71 16 43 H 0.06 1.69 7.81 -51.93 -0.41 1.28 16 44 H 0.06 1.65 7.93 -51.93 -0.41 1.24 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -30.05 365.44 -10.07 -40.12 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -5.29 Total: 15.08 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -4.65 Total: 1.03 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.28 Total: -46.94 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.38 Total: -28.39 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.05 -10.07 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591928998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.733 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds