Wall clock time and date at job start Tue Mar 31 2020 18:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48489 * 109.47084 * 270.00048 * 3 2 1 5 5 H 1.48506 * 109.46999 * 29.99766 * 3 2 1 6 6 H 1.48498 * 109.47385 * 149.99583 * 3 2 1 7 7 C 1.37885 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99757 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.64151 * 298.30353 * 9 7 2 11 11 C 1.55158 * 110.71520 * 174.97092 * 9 7 2 12 12 C 1.55130 * 101.48469 * 205.96782 * 11 9 7 13 13 N 1.47424 * 104.72330 * 37.29293 * 12 11 9 14 14 C 1.34781 * 125.64742 * 155.81328 * 13 12 11 15 15 O 1.21582 * 120.00143 * 179.69416 * 14 13 12 16 16 N 1.34779 * 119.99894 * 359.69833 * 14 13 12 17 17 C 1.46495 * 119.99996 * 179.97438 * 16 14 13 18 18 H 1.09007 * 110.26633 * 35.62300 * 17 16 14 19 19 C 1.54342 * 110.30649 * 157.79868 * 17 16 14 20 20 C 1.54340 * 102.38969 * 92.56417 * 19 17 16 21 21 C 1.51377 * 105.17285 * 26.36179 * 20 19 17 22 22 C 1.38461 * 130.37025 * 162.80368 * 21 20 19 23 23 C 1.38321 * 120.19643 * 180.02562 * 22 21 20 24 24 F 1.35104 * 120.06179 * 180.02562 * 23 22 21 25 25 C 1.38486 * 119.87988 * 0.27942 * 23 22 21 26 26 C 1.38055 * 119.90511 * 359.42332 * 25 23 22 27 27 C 1.38231 * 109.75503 * 342.80880 * 21 20 19 28 28 C 1.47019 * 108.70242 * 335.55755 * 13 12 11 29 29 H 0.96996 * 119.99865 * 359.97438 * 1 2 3 30 30 H 0.96705 * 113.99847 * 61.69037 * 10 9 7 31 31 H 1.09000 * 111.00567 * 324.20874 * 11 9 7 32 32 H 1.09005 * 111.00714 * 88.02186 * 11 9 7 33 33 H 1.09002 * 110.49769 * 278.45489 * 12 11 9 34 34 H 1.09003 * 110.34623 * 156.06221 * 12 11 9 35 35 H 0.97004 * 119.99824 * 359.97438 * 16 14 13 36 36 H 1.08994 * 110.82472 * 210.79614 * 19 17 16 37 37 H 1.09007 * 110.81703 * 334.14867 * 19 17 16 38 38 H 1.09003 * 110.31200 * 267.43368 * 20 19 17 39 39 H 1.09009 * 110.30456 * 145.28403 * 20 19 17 40 40 H 1.08007 * 119.90419 * 0.02860 * 22 21 20 41 41 H 1.08003 * 120.04399 * 179.72601 * 25 23 22 42 42 H 1.07997 * 119.87810 * 180.25537 * 26 25 23 43 43 H 1.09004 * 109.88098 * 120.70137 * 28 13 12 44 44 H 1.08998 * 109.88297 * 241.71221 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4495 -2.6181 1.1776 11 6 2.2284 -3.6974 -0.1260 12 6 1.3164 -4.7732 -0.7722 13 7 0.4651 -4.0253 -1.7152 14 6 -0.1404 -4.5392 -2.8042 15 8 -0.8270 -3.8270 -3.5110 16 7 0.0152 -5.8427 -3.1096 17 6 -0.6434 -6.4014 -4.2929 18 1 -0.6618 -5.6660 -5.0973 19 6 0.0811 -7.6840 -4.7536 20 6 -0.7025 -8.7901 -4.0157 21 6 -2.0848 -8.2148 -3.7925 22 6 -3.2771 -8.8431 -3.4752 23 6 -4.4339 -8.1013 -3.3177 24 9 -5.5958 -8.7170 -3.0076 25 6 -4.4001 -6.7268 -3.4838 26 6 -3.2098 -6.1001 -3.7941 27 6 -2.0509 -6.8422 -3.9519 28 6 0.3809 -2.6274 -1.2676 29 1 -0.4850 0.8400 0.0004 30 1 -0.2286 -1.9338 1.2625 31 1 3.0676 -3.4501 -0.7762 32 1 2.5786 -4.0213 0.8541 33 1 0.7043 -5.2605 -0.0133 34 1 1.9178 -5.5092 -1.3058 35 1 0.5632 -6.4108 -2.5458 36 1 0.0015 -7.8073 -5.8336 37 1 1.1258 -7.6718 -4.4426 38 1 -0.2284 -9.0169 -3.0607 39 1 -0.7613 -9.6874 -4.6321 40 1 -3.3041 -9.9155 -3.3502 41 1 -5.3027 -6.1455 -3.3658 42 1 -3.1831 -5.0277 -3.9194 43 1 0.7605 -1.9654 -2.0461 44 1 -0.6537 -2.3735 -1.0373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591928998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:54 Heat of formation + Delta-G solvation = -113.627440 kcal Electronic energy + Delta-G solvation = -28973.487023 eV Core-core repulsion = 24804.071639 eV Total energy + Delta-G solvation = -4169.415384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.97175 -41.73023 -40.67734 -39.03289 -36.96259 -36.05242 -34.26971 -34.22707 -32.23036 -31.36509 -29.81082 -29.55174 -27.86913 -26.57407 -24.29127 -23.99035 -22.22352 -21.85993 -21.39401 -21.04654 -19.23551 -18.87285 -18.19660 -17.60406 -17.47507 -17.13965 -16.85269 -16.64916 -16.39159 -16.12451 -15.73455 -15.27328 -15.05174 -14.81547 -14.72496 -14.61041 -14.55035 -13.90271 -13.84683 -13.51204 -13.35287 -13.33299 -13.09525 -12.84930 -12.72927 -12.51900 -12.33014 -12.28843 -12.12639 -12.08866 -11.98614 -11.84025 -11.27979 -11.15576 -10.65570 -10.30628 -10.25550 -9.95185 -9.57938 -9.39738 -8.25982 -6.41863 0.01896 0.19295 1.40929 1.43011 1.52667 1.69442 2.16380 2.37704 2.52508 3.00925 3.03549 3.15064 3.41739 3.55562 3.81089 3.90362 3.96149 4.06474 4.10591 4.19299 4.22064 4.29977 4.39958 4.58999 4.62585 4.73038 4.75105 4.75978 4.88828 5.04628 5.06322 5.07100 5.10906 5.14369 5.20240 5.25265 5.29712 5.37415 5.50413 5.53180 5.56711 5.75103 5.85991 6.04468 6.20330 6.65307 7.08836 7.27404 7.34974 7.60023 8.79964 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.002868 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.707090 B = 9759.396195 C =10289.587290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.963 3.037 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.636 5.636 14 C 0.711 3.289 15 O -0.639 6.639 16 N -0.716 5.716 17 C 0.195 3.805 18 H 0.074 0.926 19 C -0.112 4.112 20 C -0.076 4.076 21 C -0.054 4.054 22 C -0.145 4.145 23 C 0.091 3.909 24 F -0.144 7.144 25 C -0.169 4.169 26 C -0.076 4.076 27 C -0.137 4.137 28 C 0.145 3.855 29 H 0.269 0.731 30 H 0.374 0.626 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.410 0.590 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.161 0.839 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.028 0.972 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 -21.357 -8.019 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.086 0.914 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.147 4.147 12 C -0.014 4.014 13 N -0.373 5.373 14 C 0.413 3.587 15 O -0.521 6.521 16 N -0.373 5.373 17 C 0.090 3.910 18 H 0.092 0.908 19 C -0.150 4.150 20 C -0.113 4.113 21 C -0.054 4.054 22 C -0.163 4.163 23 C 0.072 3.928 24 F -0.123 7.123 25 C -0.188 4.188 26 C -0.095 4.095 27 C -0.138 4.138 28 C 0.021 3.979 29 H 0.078 0.922 30 H 0.223 0.777 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.247 0.753 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.178 0.822 41 H 0.157 0.843 42 H 0.126 0.874 43 H 0.047 0.953 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.122 -21.310 -8.479 22.935 hybrid contribution -0.903 2.115 0.331 2.324 sum -0.781 -19.195 -8.148 20.867 Atomic orbital electron populations 1.69817 1.07158 1.28378 1.50198 1.25830 0.95772 1.02861 0.93171 0.85480 0.78869 0.78780 0.78068 1.20495 1.20864 1.18790 1.21851 0.93955 0.91367 1.52271 0.91369 1.19732 0.87108 0.93621 0.80393 1.86091 1.51685 1.56233 1.45509 1.22755 0.96874 0.93657 1.01455 1.22439 0.92305 0.94844 0.91805 1.47904 1.51848 1.11875 1.25638 1.15777 0.79721 0.82935 0.80290 1.90839 1.46404 1.61109 1.53736 1.44986 1.54544 1.07111 1.30659 1.20332 0.87286 0.96849 0.86530 0.90830 1.22636 1.00288 0.89726 1.02346 1.21229 0.88140 0.99170 1.02727 1.20773 0.96062 0.93229 0.95364 1.20762 0.90148 1.01721 1.03677 1.17683 0.82240 0.90831 1.02083 1.91482 1.46995 1.83139 1.90664 1.21143 0.99617 0.93476 1.04573 1.20636 0.91885 0.99850 0.97083 1.21180 0.95583 0.95076 1.01982 1.22284 0.98789 0.79252 0.97594 0.92197 0.77686 0.89626 0.89233 0.91500 0.87587 0.75256 0.87550 0.87220 0.87855 0.87082 0.82172 0.84270 0.87370 0.95348 0.95879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.56 10.97 21.45 0.24 -50.32 16 2 C 0.02 1.29 5.28 84.66 0.45 1.74 16 3 Si 0.96 42.26 29.54 68.60 2.03 44.29 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 7 C -0.56 -29.10 8.12 25.60 0.21 -28.89 16 8 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 9 C 0.23 11.15 0.85 -10.35 -0.01 11.14 16 10 O -0.59 -29.72 13.08 -148.98 -1.95 -31.67 16 11 C -0.11 -4.02 6.24 32.06 0.20 -3.82 16 12 C 0.11 3.35 6.58 86.93 0.57 3.92 16 13 N -0.64 -25.57 3.32 -829.31 -2.76 -28.33 16 14 C 0.71 27.70 8.48 179.05 1.52 29.22 16 15 O -0.64 -30.71 16.18 -3.97 -0.06 -30.78 16 16 N -0.72 -18.84 5.07 -458.17 -2.32 -21.16 16 17 C 0.20 4.44 3.17 44.92 0.14 4.59 16 18 H 0.07 2.05 7.64 -2.38 -0.02 2.03 16 19 C -0.11 -1.26 6.66 31.50 0.21 -1.05 16 20 C -0.08 -0.74 6.77 30.52 0.21 -0.54 16 21 C -0.05 -0.98 6.14 -19.60 -0.12 -1.10 16 22 C -0.14 -2.73 10.02 22.34 0.22 -2.51 16 23 C 0.09 2.15 7.30 22.35 0.16 2.32 16 24 F -0.14 -3.47 17.27 44.97 0.78 -2.69 16 25 C -0.17 -4.46 10.03 22.29 0.22 -4.24 16 26 C -0.08 -2.23 10.04 22.29 0.22 -2.01 16 27 C -0.14 -3.40 5.76 -19.58 -0.11 -3.51 16 28 C 0.14 7.26 5.23 86.73 0.45 7.71 16 29 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.37 19.95 7.45 -74.05 -0.55 19.40 16 31 H 0.09 2.99 8.04 -2.39 -0.02 2.97 16 32 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.11 2.25 7.29 -2.39 -0.02 2.23 16 35 H 0.41 7.95 7.06 -92.71 -0.65 7.29 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.11 0.83 8.05 -2.38 -0.02 0.82 16 38 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 42 H 0.11 3.77 7.87 -2.91 -0.02 3.74 16 43 H 0.03 1.58 7.81 -2.39 -0.02 1.56 16 44 H 0.02 1.30 7.93 -2.39 -0.02 1.28 16 Total: -1.00 -70.68 365.44 0.34 -70.34 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -0.16 Total: 37.36 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 4.55 Total: 12.96 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -4.84 Total: -99.81 kcal Atomic # 8 Polarization: -60.44 SS G_CDS: -2.01 Total: -62.45 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.78 Total: -2.69 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -70.68 0.34 -70.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591928998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.286 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds