Wall clock time and date at job start Tue Mar 31 2020 18:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48508 * 109.47027 * 264.83689 * 3 2 1 5 5 H 1.48502 * 109.47112 * 24.83375 * 3 2 1 6 6 H 1.48496 * 109.46917 * 144.83837 * 3 2 1 7 7 C 1.37874 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99978 * 3.39002 * 7 2 1 9 9 C 1.50702 * 120.00019 * 183.38528 * 7 2 1 10 10 O 1.42902 * 110.63953 * 61.91963 * 9 7 2 11 11 C 1.55154 * 110.87291 * 298.67100 * 9 7 2 12 12 C 1.54909 * 101.58146 * 206.06189 * 11 9 7 13 13 N 1.47744 * 104.84216 * 37.09568 * 12 11 9 14 14 C 1.34775 * 125.82418 * 155.82412 * 13 12 11 15 15 O 1.21584 * 120.00055 * 179.90573 * 14 13 12 16 16 N 1.34778 * 120.00130 * 359.91229 * 14 13 12 17 17 C 1.46496 * 120.00229 * 179.97438 * 16 14 13 18 18 H 1.09004 * 110.26805 * 327.07240 * 17 16 14 19 19 C 1.54348 * 110.30189 * 205.00113 * 17 16 14 20 20 C 1.54346 * 102.38921 * 214.71176 * 19 17 16 21 21 C 1.51373 * 105.17122 * 26.35658 * 20 19 17 22 22 C 1.38468 * 130.36816 * 162.82915 * 21 20 19 23 23 C 1.38332 * 120.19346 * 180.10734 * 22 21 20 24 24 F 1.35093 * 120.05695 * 179.97438 * 23 22 21 25 25 C 1.38473 * 119.88017 * 359.87335 * 23 22 21 26 26 C 1.38060 * 119.91099 * 0.05483 * 25 23 22 27 27 C 1.38234 * 109.75806 * 342.80867 * 21 20 19 28 28 C 1.47019 * 108.52888 * 335.74958 * 13 12 11 29 29 H 0.96995 * 120.00012 * 0.02562 * 1 2 3 30 30 H 0.96701 * 113.99989 * 61.69068 * 10 9 7 31 31 H 1.08995 * 111.00752 * 324.13666 * 11 9 7 32 32 H 1.09002 * 111.00372 * 87.95374 * 11 9 7 33 33 H 1.09002 * 110.36502 * 155.84556 * 12 11 9 34 34 H 1.09000 * 110.36906 * 278.06187 * 12 11 9 35 35 H 0.97002 * 119.99648 * 359.97438 * 16 14 13 36 36 H 1.08994 * 110.82214 * 332.93921 * 19 17 16 37 37 H 1.08996 * 110.82018 * 96.49122 * 19 17 16 38 38 H 1.09004 * 110.30112 * 145.28226 * 20 19 17 39 39 H 1.09003 * 110.30590 * 267.33210 * 20 19 17 40 40 H 1.07997 * 119.90286 * 359.95683 * 22 21 20 41 41 H 1.08006 * 120.04147 * 180.02562 * 25 23 22 42 42 H 1.07997 * 119.87370 * 179.97438 * 26 25 23 43 43 H 1.08992 * 109.88336 * 241.68634 * 28 13 12 44 44 H 1.09004 * 109.88394 * 120.67370 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6058 1.9835 -1.3945 5 1 1.3963 2.6818 0.5880 6 1 3.4879 1.4741 0.8063 7 6 2.0046 -1.1940 -0.0005 8 1 1.4660 -2.1285 -0.0563 9 6 3.5096 -1.1952 0.0765 10 8 3.9518 -0.6017 1.2990 11 6 4.1262 -0.4622 -1.1441 12 6 5.5171 -1.1371 -1.2420 13 7 5.2768 -2.5520 -0.8911 14 6 6.0415 -3.5978 -1.2626 15 8 5.7449 -4.7232 -0.9108 16 7 7.1352 -3.3960 -2.0240 17 6 7.9667 -4.5326 -2.4274 18 1 7.9660 -5.2960 -1.6493 19 6 9.4088 -4.0649 -2.7173 20 6 9.8301 -4.9908 -3.8782 21 6 8.5384 -5.3745 -4.5677 22 6 8.3180 -5.9118 -5.8248 23 6 7.0297 -6.1830 -6.2493 24 9 6.8179 -6.7067 -7.4765 25 6 5.9578 -5.9188 -5.4134 26 6 6.1780 -5.3844 -4.1596 27 6 7.4676 -5.1112 -3.7341 28 6 4.0626 -2.6289 -0.0657 29 1 -0.4850 0.8400 -0.0004 30 1 3.6571 -1.0694 2.0924 31 1 3.5401 -0.6427 -2.0452 32 1 4.2225 0.6061 -0.9505 33 1 5.9053 -1.0603 -2.2577 34 1 6.2108 -0.6807 -0.5359 35 1 7.3716 -2.4982 -2.3049 36 1 9.4220 -3.0209 -3.0300 37 1 10.0480 -4.2183 -1.8479 38 1 10.4838 -4.4579 -4.5688 39 1 10.3321 -5.8777 -3.4915 40 1 9.1542 -6.1174 -6.4765 41 1 4.9509 -6.1299 -5.7421 42 1 5.3416 -5.1782 -3.5083 43 1 4.3074 -3.0310 0.9173 44 1 3.3230 -3.2648 -0.5525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591928999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:58 Heat of formation + Delta-G solvation = -80.994009 kcal Electronic energy + Delta-G solvation = -28882.470029 eV Core-core repulsion = 24714.469737 eV Total energy + Delta-G solvation = -4168.000292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.06519 -40.74710 -39.56386 -37.74698 -36.01749 -34.55869 -33.54302 -32.45318 -31.16092 -30.10228 -29.07000 -28.40951 -26.82429 -24.91973 -23.21472 -22.68227 -21.44629 -21.14534 -20.06942 -19.59798 -18.05778 -17.42350 -17.22485 -16.82404 -16.30460 -16.14725 -15.71782 -15.25552 -15.06042 -14.81949 -14.69673 -14.41849 -13.89892 -13.60369 -13.42027 -13.23664 -13.15554 -12.97347 -12.67304 -12.60409 -12.30734 -12.18458 -12.04806 -11.99675 -11.65514 -11.37984 -11.19920 -11.15537 -11.04919 -10.61170 -10.33243 -10.14762 -9.81543 -9.17308 -9.10446 -9.06421 -8.77728 -8.67427 -8.53931 -8.11351 -6.24460 -4.36668 0.91489 1.03597 2.82000 3.25273 3.37079 3.38285 3.43857 3.55916 3.81267 4.11647 4.25344 4.28889 4.38049 4.66370 4.70282 4.79262 4.85692 5.01029 5.04418 5.10288 5.24655 5.34438 5.36884 5.42192 5.48273 5.54738 5.66637 5.70932 5.76456 5.81036 5.85505 5.92311 6.06280 6.12412 6.30785 6.43010 6.50360 6.55390 6.57701 6.63272 6.70359 7.07165 7.26894 7.46752 8.15538 8.22440 8.70679 8.82647 8.86152 9.38229 10.85999 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002916 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.528542 B = 9600.490281 C =10320.230727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.089 3.911 3 Si 0.876 3.124 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.228 1.228 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.216 3.784 10 O -0.574 6.574 11 C -0.125 4.125 12 C 0.103 3.897 13 N -0.627 5.627 14 C 0.719 3.281 15 O -0.594 6.594 16 N -0.741 5.741 17 C 0.204 3.796 18 H 0.107 0.893 19 C -0.124 4.124 20 C -0.078 4.078 21 C -0.069 4.069 22 C -0.147 4.147 23 C 0.099 3.901 24 F -0.141 7.141 25 C -0.155 4.155 26 C -0.053 4.053 27 C -0.116 4.116 28 C 0.115 3.885 29 H 0.267 0.733 30 H 0.366 0.634 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.396 0.604 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.056 0.944 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.386 -6.919 -8.900 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.117 4.117 3 Si 0.704 3.296 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.151 1.151 7 C -0.589 4.589 8 H 0.097 0.903 9 C 0.176 3.824 10 O -0.380 6.380 11 C -0.163 4.163 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.421 3.579 15 O -0.473 6.473 16 N -0.397 5.397 17 C 0.099 3.901 18 H 0.125 0.875 19 C -0.162 4.162 20 C -0.115 4.115 21 C -0.069 4.069 22 C -0.166 4.166 23 C 0.080 3.920 24 F -0.120 7.120 25 C -0.174 4.174 26 C -0.071 4.071 27 C -0.118 4.118 28 C -0.008 4.008 29 H 0.077 0.923 30 H 0.213 0.787 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.074 0.926 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.310 -7.312 -9.084 23.420 hybrid contribution -0.118 0.807 -0.230 0.847 sum 20.192 -6.506 -9.314 23.168 Atomic orbital electron populations 1.69926 1.06678 1.27659 1.47971 1.24953 0.94579 0.99658 0.92466 0.87069 0.81774 0.82129 0.78658 1.20999 1.22750 1.15095 1.21188 0.88181 0.95211 1.54288 0.90305 1.19980 0.93530 0.86297 0.82565 1.86492 1.78637 1.56922 1.15961 1.23062 0.93718 0.99549 0.99944 1.22358 0.99237 0.81572 0.98880 1.47765 1.28185 1.05638 1.54816 1.15469 0.79657 0.83860 0.78933 1.90902 1.73255 1.21518 1.61621 1.45198 1.28000 1.09977 1.56547 1.20261 0.88279 0.88523 0.93078 0.87513 1.22620 0.94621 1.00188 0.98807 1.21028 0.94256 0.99842 0.96405 1.20296 0.96248 0.97569 0.92831 1.20444 0.95541 1.03723 0.96909 1.17517 0.94056 0.99286 0.81124 1.91492 1.95718 1.84218 1.40529 1.21105 0.98810 1.02847 0.94607 1.20606 0.96922 0.95050 0.94542 1.21023 0.93313 1.00519 0.96964 1.22665 0.84108 1.00408 0.93633 0.92306 0.78699 0.89373 0.90678 0.92140 0.91623 0.76926 0.90049 0.89329 0.89983 0.89350 0.85017 0.84519 0.84863 0.92550 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 2 C 0.09 2.41 5.47 -17.82 -0.10 2.32 16 3 Si 0.88 20.59 23.89 -169.99 -4.06 16.53 16 4 H -0.28 -6.44 7.08 56.52 0.40 -6.04 16 5 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.23 -5.19 5.50 56.52 0.31 -4.88 16 7 C -0.55 -14.39 8.82 -34.44 -0.30 -14.69 16 8 H 0.08 2.26 7.82 -52.49 -0.41 1.85 16 9 C 0.22 4.66 0.67 -89.94 -0.06 4.60 16 10 O -0.57 -11.99 10.45 -35.23 -0.37 -12.36 16 11 C -0.12 -2.42 4.82 -24.58 -0.12 -2.54 16 12 C 0.10 1.60 6.59 -2.35 -0.02 1.58 16 13 N -0.63 -11.00 3.34 -175.98 -0.59 -11.59 16 14 C 0.72 12.16 8.21 -86.92 -0.71 11.45 16 15 O -0.59 -12.01 16.10 5.29 0.09 -11.93 16 16 N -0.74 -9.23 5.05 -58.79 -0.30 -9.53 16 17 C 0.20 2.21 3.21 -68.05 -0.22 2.00 16 18 H 0.11 1.32 7.56 -51.93 -0.39 0.93 16 19 C -0.12 -0.86 6.76 -25.32 -0.17 -1.03 16 20 C -0.08 -0.51 6.77 -26.85 -0.18 -0.69 16 21 C -0.07 -0.66 6.14 -104.21 -0.64 -1.30 16 22 C -0.15 -1.46 10.02 -39.46 -0.40 -1.86 16 23 C 0.10 1.14 7.30 -39.46 -0.29 0.85 16 24 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 25 C -0.15 -1.85 10.03 -39.56 -0.40 -2.24 16 26 C -0.05 -0.69 10.00 -39.54 -0.40 -1.09 16 27 C -0.12 -1.36 5.79 -104.19 -0.60 -1.96 16 28 C 0.11 2.30 6.20 -3.06 -0.02 2.28 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.37 6.70 9.08 45.56 0.41 7.11 16 31 H 0.09 1.75 8.04 -51.93 -0.42 1.33 16 32 H 0.07 1.48 5.00 -51.93 -0.26 1.22 16 33 H 0.06 0.76 7.31 -51.93 -0.38 0.38 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 4.10 6.91 -40.82 -0.28 3.81 16 36 H 0.08 0.50 7.82 -51.93 -0.41 0.09 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.13 1.99 7.55 -52.49 -0.40 1.59 16 43 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 44 H 0.07 1.57 7.66 -51.93 -0.40 1.17 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -32.06 356.31 -8.77 -40.83 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.11 Total: 11.75 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -4.62 Total: -2.33 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.11 Total: -46.23 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.28 Total: -24.29 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.06 Total: 16.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.06 -8.77 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591928999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.161 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds