Wall clock time and date at job start Tue Mar 31 2020 18:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48508 * 109.47027 * 264.83689 * 3 2 1 5 5 H 1.48502 * 109.47112 * 24.83375 * 3 2 1 6 6 H 1.48496 * 109.46917 * 144.83837 * 3 2 1 7 7 C 1.37874 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99978 * 3.39002 * 7 2 1 9 9 C 1.50702 * 120.00019 * 183.38528 * 7 2 1 10 10 O 1.42902 * 110.63953 * 61.91963 * 9 7 2 11 11 C 1.55154 * 110.87291 * 298.67100 * 9 7 2 12 12 C 1.54909 * 101.58146 * 206.06189 * 11 9 7 13 13 N 1.47744 * 104.84216 * 37.09568 * 12 11 9 14 14 C 1.34775 * 125.82418 * 155.82412 * 13 12 11 15 15 O 1.21584 * 120.00055 * 179.90573 * 14 13 12 16 16 N 1.34778 * 120.00130 * 359.91229 * 14 13 12 17 17 C 1.46496 * 120.00229 * 179.97438 * 16 14 13 18 18 H 1.09004 * 110.26805 * 327.07240 * 17 16 14 19 19 C 1.54348 * 110.30189 * 205.00113 * 17 16 14 20 20 C 1.54346 * 102.38921 * 214.71176 * 19 17 16 21 21 C 1.51373 * 105.17122 * 26.35658 * 20 19 17 22 22 C 1.38468 * 130.36816 * 162.82915 * 21 20 19 23 23 C 1.38332 * 120.19346 * 180.10734 * 22 21 20 24 24 F 1.35093 * 120.05695 * 179.97438 * 23 22 21 25 25 C 1.38473 * 119.88017 * 359.87335 * 23 22 21 26 26 C 1.38060 * 119.91099 * 0.05483 * 25 23 22 27 27 C 1.38234 * 109.75806 * 342.80867 * 21 20 19 28 28 C 1.47019 * 108.52888 * 335.74958 * 13 12 11 29 29 H 0.96995 * 120.00012 * 0.02562 * 1 2 3 30 30 H 0.96701 * 113.99989 * 61.69068 * 10 9 7 31 31 H 1.08995 * 111.00752 * 324.13666 * 11 9 7 32 32 H 1.09002 * 111.00372 * 87.95374 * 11 9 7 33 33 H 1.09002 * 110.36502 * 155.84556 * 12 11 9 34 34 H 1.09000 * 110.36906 * 278.06187 * 12 11 9 35 35 H 0.97002 * 119.99648 * 359.97438 * 16 14 13 36 36 H 1.08994 * 110.82214 * 332.93921 * 19 17 16 37 37 H 1.08996 * 110.82018 * 96.49122 * 19 17 16 38 38 H 1.09004 * 110.30112 * 145.28226 * 20 19 17 39 39 H 1.09003 * 110.30590 * 267.33210 * 20 19 17 40 40 H 1.07997 * 119.90286 * 359.95683 * 22 21 20 41 41 H 1.08006 * 120.04147 * 180.02562 * 25 23 22 42 42 H 1.07997 * 119.87370 * 179.97438 * 26 25 23 43 43 H 1.08992 * 109.88336 * 241.68634 * 28 13 12 44 44 H 1.09004 * 109.88394 * 120.67370 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6058 1.9835 -1.3945 5 1 1.3963 2.6818 0.5880 6 1 3.4879 1.4741 0.8063 7 6 2.0046 -1.1940 -0.0005 8 1 1.4660 -2.1285 -0.0563 9 6 3.5096 -1.1952 0.0765 10 8 3.9518 -0.6017 1.2990 11 6 4.1262 -0.4622 -1.1441 12 6 5.5171 -1.1371 -1.2420 13 7 5.2768 -2.5520 -0.8911 14 6 6.0415 -3.5978 -1.2626 15 8 5.7449 -4.7232 -0.9108 16 7 7.1352 -3.3960 -2.0240 17 6 7.9667 -4.5326 -2.4274 18 1 7.9660 -5.2960 -1.6493 19 6 9.4088 -4.0649 -2.7173 20 6 9.8301 -4.9908 -3.8782 21 6 8.5384 -5.3745 -4.5677 22 6 8.3180 -5.9118 -5.8248 23 6 7.0297 -6.1830 -6.2493 24 9 6.8179 -6.7067 -7.4765 25 6 5.9578 -5.9188 -5.4134 26 6 6.1780 -5.3844 -4.1596 27 6 7.4676 -5.1112 -3.7341 28 6 4.0626 -2.6289 -0.0657 29 1 -0.4850 0.8400 -0.0004 30 1 3.6571 -1.0694 2.0924 31 1 3.5401 -0.6427 -2.0452 32 1 4.2225 0.6061 -0.9505 33 1 5.9053 -1.0603 -2.2577 34 1 6.2108 -0.6807 -0.5359 35 1 7.3716 -2.4982 -2.3049 36 1 9.4220 -3.0209 -3.0300 37 1 10.0480 -4.2183 -1.8479 38 1 10.4838 -4.4579 -4.5688 39 1 10.3321 -5.8777 -3.4915 40 1 9.1542 -6.1174 -6.4765 41 1 4.9509 -6.1299 -5.7421 42 1 5.3416 -5.1782 -3.5083 43 1 4.3074 -3.0310 0.9173 44 1 3.3230 -3.2648 -0.5525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591928999.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:57 Heat of formation + Delta-G solvation = -104.103366 kcal Electronic energy + Delta-G solvation = -28883.472126 eV Core-core repulsion = 24714.469737 eV Total energy + Delta-G solvation = -4169.002389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.96642 -41.75545 -40.77971 -39.23137 -36.93028 -36.13837 -34.55688 -34.50447 -32.24633 -31.48108 -29.99445 -29.80730 -27.94402 -26.51246 -24.15729 -24.01143 -22.30616 -22.01038 -21.54869 -21.02880 -19.61996 -18.95817 -18.14463 -17.79113 -17.26278 -17.24164 -16.83081 -16.65586 -16.54250 -16.42036 -15.86447 -15.38342 -15.10640 -14.98034 -14.77682 -14.55807 -14.29496 -14.08403 -14.03393 -13.85696 -13.42699 -13.25406 -13.21421 -13.03852 -12.84446 -12.73425 -12.63727 -12.37293 -12.15553 -11.91276 -11.84408 -11.75065 -11.28513 -10.96156 -10.79845 -10.36057 -10.29818 -9.95668 -9.54114 -9.48865 -8.36188 -6.52603 0.04026 0.18328 1.38450 1.47568 1.59294 1.69211 2.10084 2.40310 2.50216 2.98718 2.99804 3.05845 3.41958 3.53777 3.56047 3.77116 3.89524 3.95908 4.03171 4.13613 4.18702 4.23854 4.26404 4.43189 4.54641 4.59609 4.65320 4.75361 4.79847 4.88897 4.94191 5.05398 5.06604 5.07017 5.07892 5.10992 5.18935 5.29756 5.43410 5.44953 5.51739 5.59358 5.85175 6.06220 6.08398 6.58588 6.97932 7.11843 7.29174 7.53231 8.78293 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002916 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.528542 B = 9600.490281 C =10320.230727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.034 3.966 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.309 1.309 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.032 0.968 9 C 0.219 3.781 10 O -0.571 6.571 11 C -0.129 4.129 12 C 0.111 3.889 13 N -0.631 5.631 14 C 0.716 3.284 15 O -0.634 6.634 16 N -0.721 5.721 17 C 0.198 3.802 18 H 0.087 0.913 19 C -0.112 4.112 20 C -0.072 4.072 21 C -0.059 4.059 22 C -0.141 4.141 23 C 0.088 3.912 24 F -0.145 7.145 25 C -0.167 4.167 26 C -0.075 4.075 27 C -0.132 4.132 28 C 0.124 3.876 29 H 0.268 0.732 30 H 0.376 0.624 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.410 0.590 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.161 0.839 41 H 0.137 0.863 42 H 0.102 0.898 43 H 0.056 0.944 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.400 -5.390 -9.919 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.238 1.238 6 H -0.132 1.132 7 C -0.592 4.592 8 H 0.051 0.949 9 C 0.178 3.822 10 O -0.378 6.378 11 C -0.167 4.167 12 C -0.010 4.010 13 N -0.368 5.368 14 C 0.418 3.582 15 O -0.516 6.516 16 N -0.377 5.377 17 C 0.093 3.907 18 H 0.105 0.895 19 C -0.150 4.150 20 C -0.109 4.109 21 C -0.059 4.059 22 C -0.159 4.159 23 C 0.069 3.931 24 F -0.124 7.124 25 C -0.186 4.186 26 C -0.093 4.093 27 C -0.134 4.134 28 C 0.000 4.000 29 H 0.077 0.923 30 H 0.225 0.775 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.248 0.752 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.178 0.822 41 H 0.155 0.845 42 H 0.120 0.880 43 H 0.074 0.926 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 25.380 -5.779 -10.130 27.931 hybrid contribution -1.745 0.173 0.094 1.756 sum 23.635 -5.606 -10.037 26.282 Atomic orbital electron populations 1.70074 1.08701 1.28594 1.50341 1.25835 0.95175 1.03503 0.92063 0.86060 0.80671 0.76993 0.79675 1.19161 1.23780 1.13175 1.21439 0.91043 0.93384 1.53305 0.94938 1.19773 0.90746 0.87777 0.83860 1.86431 1.78227 1.57066 1.16104 1.23005 0.95782 0.99925 0.97940 1.22447 0.97196 0.79575 1.01815 1.47684 1.27438 1.06922 1.54760 1.15640 0.80398 0.82941 0.79174 1.90876 1.74399 1.23155 1.63171 1.45065 1.26385 1.11391 1.54851 1.20532 0.90434 0.87749 0.92028 0.89489 1.22668 0.91343 1.01136 0.99861 1.21155 0.92745 1.00719 0.96295 1.20679 0.97199 0.95908 0.92152 1.20760 0.95472 1.02372 0.97340 1.17665 0.94707 0.99762 0.80953 1.91480 1.95832 1.84352 1.40706 1.21128 0.99445 1.03394 0.94654 1.20456 0.97045 0.97045 0.94790 1.21204 0.93253 1.01014 0.97914 1.22281 0.84866 0.99028 0.93854 0.92293 0.77499 0.90518 0.90049 0.88298 0.89507 0.75207 0.88356 0.87365 0.87229 0.87631 0.82187 0.84525 0.87969 0.92584 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 13.96 21.45 0.30 -56.74 16 2 C 0.03 1.91 5.47 84.65 0.46 2.37 16 3 Si 0.94 42.21 23.89 68.60 1.64 43.85 16 4 H -0.27 -11.13 7.08 99.48 0.70 -10.43 16 5 H -0.31 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.21 -8.72 5.50 99.48 0.55 -8.17 16 7 C -0.55 -30.09 8.82 25.60 0.23 -29.86 16 8 H 0.03 2.01 7.82 -2.91 -0.02 1.98 16 9 C 0.22 9.40 0.67 -10.35 -0.01 9.40 16 10 O -0.57 -22.90 10.45 -148.98 -1.56 -24.45 16 11 C -0.13 -4.73 4.82 31.98 0.15 -4.57 16 12 C 0.11 3.11 6.59 86.79 0.57 3.68 16 13 N -0.63 -21.56 3.34 -828.94 -2.77 -24.32 16 14 C 0.72 23.89 8.21 179.05 1.47 25.36 16 15 O -0.63 -26.43 16.10 -3.98 -0.06 -26.50 16 16 N -0.72 -16.40 5.05 -458.18 -2.31 -18.72 16 17 C 0.20 3.87 3.21 44.92 0.14 4.02 16 18 H 0.09 2.08 7.56 -2.38 -0.02 2.06 16 19 C -0.11 -1.03 6.76 31.51 0.21 -0.82 16 20 C -0.07 -0.58 6.77 30.52 0.21 -0.37 16 21 C -0.06 -0.95 6.14 -19.60 -0.12 -1.07 16 22 C -0.14 -2.40 10.02 22.35 0.22 -2.18 16 23 C 0.09 1.95 7.30 22.35 0.16 2.11 16 24 F -0.14 -3.32 17.27 44.97 0.78 -2.54 16 25 C -0.17 -4.14 10.03 22.28 0.22 -3.91 16 26 C -0.07 -2.03 10.00 22.29 0.22 -1.80 16 27 C -0.13 -2.93 5.79 -19.59 -0.11 -3.04 16 28 C 0.12 5.10 6.20 86.73 0.54 5.64 16 29 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 30 H 0.38 13.42 9.08 -74.06 -0.67 12.75 16 31 H 0.08 2.98 8.04 -2.39 -0.02 2.96 16 32 H 0.08 2.91 5.00 -2.39 -0.01 2.90 16 33 H 0.10 2.04 7.31 -2.39 -0.02 2.02 16 34 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.41 6.91 6.91 -92.71 -0.64 6.26 16 36 H 0.10 0.63 7.82 -2.39 -0.02 0.61 16 37 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.11 0.40 8.14 -2.38 -0.02 0.39 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.10 3.35 7.55 -2.91 -0.02 3.33 16 43 H 0.06 2.27 8.05 -2.39 -0.02 2.25 16 44 H 0.04 1.91 7.66 -2.38 -0.02 1.89 16 Total: -1.00 -74.67 356.31 0.17 -74.50 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.42 Total: 29.98 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 4.58 Total: 4.95 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -4.78 Total: -99.77 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -1.62 Total: -50.95 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.64 Total: 43.85 kcal Total: -74.67 0.17 -74.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591928999.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.606 kcal (2) G-P(sol) polarization free energy of solvation -74.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds