Wall clock time and date at job start Tue Mar 31 2020 18:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99955 * 2 1 4 4 H 1.48498 * 109.47451 * 239.99776 * 3 2 1 5 5 H 1.48499 * 109.47599 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47090 * 119.99946 * 3 2 1 7 7 C 1.37878 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99814 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.91369 * 297.54592 * 9 7 2 11 11 C 1.55448 * 111.11612 * 173.55627 * 9 7 2 12 12 C 1.54321 * 102.96961 * 206.45980 * 11 9 7 13 13 N 1.47026 * 107.26791 * 22.19024 * 12 11 9 14 14 C 1.34781 * 125.64203 * 181.03648 * 13 12 11 15 15 O 1.21588 * 119.99212 * 180.02562 * 14 13 12 16 16 N 1.34771 * 120.00315 * 0.02562 * 14 13 12 17 17 C 1.46501 * 119.99963 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.26912 * 324.38367 * 17 16 14 19 19 C 1.54344 * 110.30315 * 202.20514 * 17 16 14 20 20 C 1.54344 * 102.39093 * 267.43361 * 19 17 16 21 21 C 1.51382 * 105.17406 * 333.64033 * 20 19 17 22 22 C 1.38511 * 130.36022 * 197.19495 * 21 20 19 23 23 C 1.38060 * 120.24961 * 179.97438 * 22 21 20 24 24 C 1.38469 * 119.90960 * 0.02562 * 23 22 21 25 25 F 1.35102 * 120.06147 * 180.02562 * 24 23 22 26 26 C 1.38329 * 119.88389 * 0.02562 * 24 23 22 27 27 C 1.38237 * 109.74821 * 17.19885 * 21 20 19 28 28 C 1.47419 * 108.70576 * 1.06162 * 13 12 11 29 29 H 0.97004 * 120.00000 * 0.02562 * 1 2 3 30 30 H 0.96699 * 114.00301 * 62.45375 * 10 9 7 31 31 H 1.08998 * 110.70855 * 88.08784 * 11 9 7 32 32 H 1.08998 * 110.85957 * 324.90400 * 11 9 7 33 33 H 1.08998 * 109.88101 * 262.77542 * 12 11 9 34 34 H 1.08997 * 110.01327 * 141.67909 * 12 11 9 35 35 H 0.96996 * 120.00191 * 0.02562 * 16 14 13 36 36 H 1.08997 * 110.82429 * 25.65936 * 19 17 16 37 37 H 1.09004 * 110.82179 * 149.21176 * 19 17 16 38 38 H 1.09003 * 110.30077 * 214.71775 * 20 19 17 39 39 H 1.08998 * 110.38675 * 92.61259 * 20 19 17 40 40 H 1.07998 * 119.87407 * 0.02562 * 22 21 20 41 41 H 1.08001 * 120.04451 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.90449 * 180.02562 * 26 24 23 43 43 H 1.09002 * 110.36926 * 94.70918 * 28 13 12 44 44 H 1.08995 * 110.36556 * 216.92202 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4608 -2.6319 1.1838 11 6 2.2188 -3.7047 -0.1616 12 6 1.3242 -4.7824 -0.8093 13 7 0.2045 -4.0866 -1.4603 14 6 -0.8098 -4.6783 -2.1220 15 8 -1.6855 -4.0003 -2.6239 16 7 -0.8532 -6.0211 -2.2274 17 6 -1.9560 -6.6642 -2.9461 18 1 -2.8831 -6.1138 -2.7858 19 6 -2.1138 -8.1288 -2.4854 20 6 -1.2413 -8.8923 -3.5042 21 6 -1.2318 -8.0260 -4.7456 22 6 -0.8907 -8.3345 -6.0521 23 6 -0.9597 -7.3681 -7.0357 24 6 -1.3710 -6.0853 -6.7155 25 9 -1.4402 -5.1373 -7.6757 26 6 -1.7110 -5.7759 -5.4108 27 6 -1.6425 -6.7456 -4.4248 28 6 0.3752 -2.6348 -1.2700 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2256 -1.9571 1.2763 31 1 2.5838 -4.0392 0.8095 32 1 3.0509 -3.4489 -0.8175 33 1 0.9451 -5.4590 -0.0433 34 1 1.8932 -5.3435 -1.5506 35 1 -0.1548 -6.5619 -1.8267 36 1 -1.7317 -8.2598 -1.4730 37 1 -3.1545 -8.4460 -2.5520 38 1 -1.6813 -9.8648 -3.7251 39 1 -0.2284 -9.0145 -3.1205 40 1 -0.5702 -9.3350 -6.3025 41 1 -0.6933 -7.6124 -8.0534 42 1 -2.0322 -4.7756 -5.1608 43 1 0.8830 -2.1966 -2.1293 44 1 -0.5919 -2.1559 -1.1171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591952895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:42 Heat of formation + Delta-G solvation = -93.917372 kcal Electronic energy + Delta-G solvation = -29097.424366 eV Core-core repulsion = 24928.863675 eV Total energy + Delta-G solvation = -4168.560691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.89606 -40.63305 -39.27690 -37.36838 -35.91338 -34.22460 -33.00505 -32.21945 -31.27127 -29.96819 -28.83117 -27.81593 -26.74219 -24.85557 -23.13945 -22.68903 -21.26212 -20.91131 -19.68888 -19.56789 -17.72873 -17.21333 -17.02114 -16.55734 -16.15197 -15.57780 -15.48903 -15.23598 -15.08181 -14.60901 -14.45846 -14.30808 -13.91895 -13.76652 -13.47981 -13.02993 -12.86549 -12.76130 -12.55679 -12.14385 -12.09104 -11.82012 -11.66394 -11.46465 -11.36486 -11.22868 -11.07089 -10.99995 -10.81675 -10.61072 -10.48341 -10.19288 -9.66748 -9.35725 -9.10546 -8.91312 -8.68207 -8.58768 -8.35551 -7.69823 -6.26264 -4.36204 0.98329 1.10208 3.04914 3.23544 3.29275 3.30869 3.51742 3.69139 3.98790 4.24195 4.26920 4.38870 4.47134 4.74739 4.80706 4.86780 4.99919 5.00611 5.07832 5.39836 5.40280 5.54133 5.56566 5.61442 5.64541 5.72764 5.75052 5.80662 5.96500 6.00182 6.06131 6.08372 6.14752 6.42930 6.50586 6.70429 6.71241 6.79567 6.88957 6.96079 7.24009 7.32881 7.63422 7.75436 8.04485 8.52343 8.67708 9.11796 9.30928 9.39115 10.80691 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.003119 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.814355 B = 8975.174052 C = 9942.925389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.106 3.894 13 N -0.627 5.627 14 C 0.717 3.283 15 O -0.594 6.594 16 N -0.740 5.740 17 C 0.202 3.798 18 H 0.099 0.901 19 C -0.126 4.126 20 C -0.080 4.080 21 C -0.102 4.102 22 C -0.087 4.087 23 C -0.150 4.150 24 C 0.091 3.909 25 F -0.140 7.140 26 C -0.115 4.115 27 C -0.078 4.078 28 C 0.114 3.886 29 H 0.271 0.729 30 H 0.381 0.619 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.049 0.951 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.056 0.944 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 -19.218 -7.864 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.084 0.916 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.364 5.364 14 C 0.419 3.581 15 O -0.472 6.472 16 N -0.396 5.396 17 C 0.096 3.904 18 H 0.117 0.883 19 C -0.164 4.164 20 C -0.117 4.117 21 C -0.103 4.103 22 C -0.105 4.105 23 C -0.169 4.169 24 C 0.072 3.928 25 F -0.118 7.118 26 C -0.135 4.135 27 C -0.080 4.080 28 C -0.008 4.008 29 H 0.081 0.919 30 H 0.231 0.769 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.228 0.772 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.074 0.926 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.436 -19.067 -8.189 20.894 hybrid contribution 0.505 1.402 -0.330 1.526 sum -1.931 -17.666 -8.520 19.707 Atomic orbital electron populations 1.69712 1.05966 1.28012 1.49293 1.25073 0.95035 0.99721 0.93328 0.86467 0.79536 0.82146 0.78784 1.20031 1.21079 1.20013 1.21409 0.93592 0.90075 1.52695 0.91613 1.19670 0.86615 0.91448 0.81397 1.86095 1.51487 1.57171 1.44370 1.22627 0.97502 0.95220 1.00040 1.21920 0.88399 0.96033 0.95454 1.47938 1.23193 1.09783 1.55445 1.15525 0.81884 0.81332 0.79332 1.90875 1.39574 1.62997 1.53803 1.45135 1.28635 1.05511 1.60299 1.20065 0.91192 0.93546 0.85592 0.88289 1.22594 1.01369 0.92878 0.99549 1.21066 1.00895 0.98070 0.91707 1.20661 0.99497 0.95559 0.94577 1.20375 0.99832 0.99156 0.91143 1.21009 1.03236 0.91852 1.00765 1.17568 1.02842 0.86467 0.85902 1.91503 1.94163 1.63693 1.62480 1.20829 1.00807 1.01353 0.90483 1.20768 0.98353 0.93010 0.95890 1.23125 1.02535 0.75602 0.99502 0.91939 0.76917 0.90829 0.90466 0.92672 0.93255 0.77214 0.89369 0.89219 0.90186 0.89929 0.85318 0.84749 0.84094 0.92570 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.85 10.69 55.43 0.59 -23.25 16 2 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.99 8.28 -34.44 -0.29 -14.28 16 8 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 9 C 0.25 5.98 0.88 -89.47 -0.08 5.90 16 10 O -0.58 -14.67 13.16 -35.23 -0.46 -15.14 16 11 C -0.12 -2.26 6.14 -24.74 -0.15 -2.41 16 12 C 0.11 1.80 6.15 -3.06 -0.02 1.78 16 13 N -0.63 -12.86 3.33 -176.25 -0.59 -13.44 16 14 C 0.72 14.26 8.48 -86.92 -0.74 13.52 16 15 O -0.59 -13.94 16.11 5.29 0.09 -13.86 16 16 N -0.74 -10.75 5.07 -58.79 -0.30 -11.05 16 17 C 0.20 2.54 3.17 -68.05 -0.22 2.32 16 18 H 0.10 1.42 7.64 -51.93 -0.40 1.02 16 19 C -0.13 -1.02 6.66 -25.32 -0.17 -1.19 16 20 C -0.08 -0.60 6.77 -26.84 -0.18 -0.78 16 21 C -0.10 -1.06 6.14 -104.19 -0.64 -1.70 16 22 C -0.09 -0.83 10.04 -39.55 -0.40 -1.22 16 23 C -0.15 -1.61 10.03 -39.56 -0.40 -2.01 16 24 C 0.09 1.24 7.30 -39.46 -0.29 0.96 16 25 F -0.14 -2.04 17.27 2.25 0.04 -2.00 16 26 C -0.12 -1.71 10.02 -39.46 -0.40 -2.11 16 27 C -0.08 -1.02 5.75 -104.21 -0.60 -1.62 16 28 C 0.11 2.76 5.38 -2.53 -0.01 2.74 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.38 9.90 7.57 45.56 0.34 10.25 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.39 4.76 7.57 -40.82 -0.31 4.45 16 36 H 0.09 0.63 8.04 -51.93 -0.42 0.21 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 42 H 0.14 2.40 7.87 -52.49 -0.41 1.98 16 43 H 0.06 1.42 8.03 -51.93 -0.42 1.01 16 44 H 0.09 2.33 7.32 -51.93 -0.38 1.95 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -30.64 366.10 -10.13 -40.76 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -5.33 Total: 15.39 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -4.66 Total: 1.69 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.29 Total: -47.75 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.38 Total: -29.00 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.64 -10.13 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591952895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.153 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds