Wall clock time and date at job start Tue Mar 31 2020 18:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99955 * 2 1 4 4 H 1.48498 * 109.47451 * 239.99776 * 3 2 1 5 5 H 1.48499 * 109.47599 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47090 * 119.99946 * 3 2 1 7 7 C 1.37878 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99814 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.91369 * 297.54592 * 9 7 2 11 11 C 1.55448 * 111.11612 * 173.55627 * 9 7 2 12 12 C 1.54321 * 102.96961 * 206.45980 * 11 9 7 13 13 N 1.47026 * 107.26791 * 22.19024 * 12 11 9 14 14 C 1.34781 * 125.64203 * 181.03648 * 13 12 11 15 15 O 1.21588 * 119.99212 * 180.02562 * 14 13 12 16 16 N 1.34771 * 120.00315 * 0.02562 * 14 13 12 17 17 C 1.46501 * 119.99963 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.26912 * 324.38367 * 17 16 14 19 19 C 1.54344 * 110.30315 * 202.20514 * 17 16 14 20 20 C 1.54344 * 102.39093 * 267.43361 * 19 17 16 21 21 C 1.51382 * 105.17406 * 333.64033 * 20 19 17 22 22 C 1.38511 * 130.36022 * 197.19495 * 21 20 19 23 23 C 1.38060 * 120.24961 * 179.97438 * 22 21 20 24 24 C 1.38469 * 119.90960 * 0.02562 * 23 22 21 25 25 F 1.35102 * 120.06147 * 180.02562 * 24 23 22 26 26 C 1.38329 * 119.88389 * 0.02562 * 24 23 22 27 27 C 1.38237 * 109.74821 * 17.19885 * 21 20 19 28 28 C 1.47419 * 108.70576 * 1.06162 * 13 12 11 29 29 H 0.97004 * 120.00000 * 0.02562 * 1 2 3 30 30 H 0.96699 * 114.00301 * 62.45375 * 10 9 7 31 31 H 1.08998 * 110.70855 * 88.08784 * 11 9 7 32 32 H 1.08998 * 110.85957 * 324.90400 * 11 9 7 33 33 H 1.08998 * 109.88101 * 262.77542 * 12 11 9 34 34 H 1.08997 * 110.01327 * 141.67909 * 12 11 9 35 35 H 0.96996 * 120.00191 * 0.02562 * 16 14 13 36 36 H 1.08997 * 110.82429 * 25.65936 * 19 17 16 37 37 H 1.09004 * 110.82179 * 149.21176 * 19 17 16 38 38 H 1.09003 * 110.30077 * 214.71775 * 20 19 17 39 39 H 1.08998 * 110.38675 * 92.61259 * 20 19 17 40 40 H 1.07998 * 119.87407 * 0.02562 * 22 21 20 41 41 H 1.08001 * 120.04451 * 180.02562 * 23 22 21 42 42 H 1.08001 * 119.90449 * 180.02562 * 26 24 23 43 43 H 1.09002 * 110.36926 * 94.70918 * 28 13 12 44 44 H 1.08995 * 110.36556 * 216.92202 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4608 -2.6319 1.1838 11 6 2.2188 -3.7047 -0.1616 12 6 1.3242 -4.7824 -0.8093 13 7 0.2045 -4.0866 -1.4603 14 6 -0.8098 -4.6783 -2.1220 15 8 -1.6855 -4.0003 -2.6239 16 7 -0.8532 -6.0211 -2.2274 17 6 -1.9560 -6.6642 -2.9461 18 1 -2.8831 -6.1138 -2.7858 19 6 -2.1138 -8.1288 -2.4854 20 6 -1.2413 -8.8923 -3.5042 21 6 -1.2318 -8.0260 -4.7456 22 6 -0.8907 -8.3345 -6.0521 23 6 -0.9597 -7.3681 -7.0357 24 6 -1.3710 -6.0853 -6.7155 25 9 -1.4402 -5.1373 -7.6757 26 6 -1.7110 -5.7759 -5.4108 27 6 -1.6425 -6.7456 -4.4248 28 6 0.3752 -2.6348 -1.2700 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2256 -1.9571 1.2763 31 1 2.5838 -4.0392 0.8095 32 1 3.0509 -3.4489 -0.8175 33 1 0.9451 -5.4590 -0.0433 34 1 1.8932 -5.3435 -1.5506 35 1 -0.1548 -6.5619 -1.8267 36 1 -1.7317 -8.2598 -1.4730 37 1 -3.1545 -8.4460 -2.5520 38 1 -1.6813 -9.8648 -3.7251 39 1 -0.2284 -9.0145 -3.1205 40 1 -0.5702 -9.3350 -6.3025 41 1 -0.6933 -7.6124 -8.0534 42 1 -2.0322 -4.7756 -5.1608 43 1 0.8830 -2.1966 -2.1293 44 1 -0.5919 -2.1559 -1.1171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591952895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:41 Heat of formation + Delta-G solvation = -114.756888 kcal Electronic energy + Delta-G solvation = -29098.328035 eV Core-core repulsion = 24928.863675 eV Total energy + Delta-G solvation = -4169.464360 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.97191 -41.73257 -40.67067 -39.01267 -36.96541 -36.03705 -34.23867 -34.18328 -32.31475 -31.51454 -29.73648 -29.48771 -27.87822 -26.60647 -24.26065 -23.98714 -22.18090 -21.84571 -21.44523 -21.05119 -19.29346 -18.83925 -18.33220 -17.54554 -17.36059 -17.00856 -16.77127 -16.65378 -16.41938 -16.25249 -15.72953 -15.37793 -15.21998 -14.82534 -14.73501 -14.57411 -14.49858 -14.03298 -13.76760 -13.52323 -13.37645 -13.27306 -12.95573 -12.82117 -12.55670 -12.54411 -12.34159 -12.27951 -12.10446 -12.09199 -12.05271 -11.93120 -11.32819 -11.18323 -10.66677 -10.33749 -10.26877 -10.02270 -9.47641 -9.34847 -8.25268 -6.42782 0.07554 0.16712 1.42138 1.42846 1.51054 1.70042 2.14045 2.37387 2.55094 3.00854 3.06545 3.16061 3.43249 3.56467 3.79093 3.93066 3.98796 4.07873 4.09159 4.17737 4.21804 4.32878 4.34094 4.60308 4.64596 4.71503 4.75081 4.78958 4.93324 5.05625 5.06585 5.09241 5.10456 5.15644 5.23352 5.25140 5.30916 5.38186 5.45611 5.52467 5.55031 5.74908 5.89494 6.04858 6.19056 6.64503 7.07255 7.26907 7.34166 7.58378 8.79540 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.003119 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.814355 B = 8975.174052 C = 9942.925389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.234 3.766 10 O -0.585 6.585 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.634 5.634 14 C 0.709 3.291 15 O -0.642 6.642 16 N -0.716 5.716 17 C 0.192 3.808 18 H 0.067 0.933 19 C -0.114 4.114 20 C -0.073 4.073 21 C -0.089 4.089 22 C -0.076 4.076 23 C -0.141 4.141 24 C 0.063 3.937 25 F -0.155 7.155 26 C -0.147 4.147 27 C -0.102 4.102 28 C 0.130 3.870 29 H 0.268 0.732 30 H 0.372 0.628 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.411 0.589 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.102 0.898 40 H 0.174 0.826 41 H 0.161 0.839 42 H 0.097 0.903 43 H 0.032 0.968 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 -23.643 -7.794 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.596 4.596 8 H 0.088 0.912 9 C 0.193 3.807 10 O -0.393 6.393 11 C -0.148 4.148 12 C -0.014 4.014 13 N -0.371 5.371 14 C 0.412 3.588 15 O -0.524 6.524 16 N -0.372 5.372 17 C 0.087 3.913 18 H 0.085 0.915 19 C -0.151 4.151 20 C -0.110 4.110 21 C -0.090 4.090 22 C -0.094 4.094 23 C -0.159 4.159 24 C 0.044 3.956 25 F -0.134 7.134 26 C -0.166 4.166 27 C -0.104 4.104 28 C 0.007 3.993 29 H 0.078 0.922 30 H 0.221 0.779 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.248 0.752 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.191 0.809 41 H 0.179 0.821 42 H 0.115 0.885 43 H 0.050 0.950 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.418 -23.571 -8.109 24.930 hybrid contribution -0.156 2.749 -0.386 2.780 sum -0.574 -20.822 -8.494 22.495 Atomic orbital electron populations 1.69848 1.07216 1.28403 1.49984 1.25839 0.95725 1.02882 0.93067 0.85525 0.78312 0.78337 0.78980 1.19600 1.21220 1.19190 1.21786 0.93991 0.91308 1.52560 0.91249 1.19889 0.87141 0.93123 0.80523 1.86082 1.51352 1.56765 1.45066 1.22627 0.97088 0.93745 1.01353 1.22115 0.87167 0.95392 0.96751 1.47878 1.24550 1.08546 1.56096 1.15804 0.81166 0.82955 0.78923 1.90845 1.41377 1.64634 1.55562 1.44938 1.29433 1.03331 1.59518 1.20371 0.89061 0.96020 0.85836 0.91491 1.22644 1.02949 0.88797 1.00759 1.21182 1.02002 0.98434 0.89372 1.21108 0.97190 0.94430 0.96234 1.20879 0.97840 1.00519 0.90135 1.21378 1.01554 0.90348 1.02642 1.17875 1.04797 0.87756 0.85202 1.91452 1.94509 1.64613 1.62838 1.20720 1.03308 1.00281 0.92317 1.20854 0.99826 0.94162 0.95543 1.22604 0.99910 0.77894 0.98932 0.92243 0.77941 0.89392 0.89548 0.90359 0.89485 0.75206 0.87552 0.87658 0.86885 0.87964 0.80893 0.82096 0.88487 0.94973 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.20 10.69 21.45 0.23 -50.97 16 2 C 0.03 1.38 5.29 84.65 0.45 1.83 16 3 Si 0.96 42.51 29.54 68.60 2.03 44.54 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.56 -29.41 8.28 25.60 0.21 -29.20 16 8 H 0.07 3.51 7.79 -2.91 -0.02 3.49 16 9 C 0.23 11.39 0.88 -10.05 -0.01 11.38 16 10 O -0.59 -30.09 13.16 -148.98 -1.96 -32.05 16 11 C -0.11 -4.12 6.14 31.88 0.20 -3.92 16 12 C 0.11 3.42 6.15 86.73 0.53 3.96 16 13 N -0.63 -26.39 3.33 -829.78 -2.76 -29.15 16 14 C 0.71 29.21 8.48 179.05 1.52 30.73 16 15 O -0.64 -32.69 16.11 -3.99 -0.06 -32.75 16 16 N -0.72 -20.24 5.07 -458.18 -2.32 -22.56 16 17 C 0.19 4.76 3.17 44.92 0.14 4.90 16 18 H 0.07 2.06 7.64 -2.39 -0.02 2.05 16 19 C -0.11 -1.43 6.66 31.51 0.21 -1.22 16 20 C -0.07 -0.68 6.77 30.52 0.21 -0.47 16 21 C -0.09 -1.52 6.14 -19.58 -0.12 -1.64 16 22 C -0.08 -1.11 10.04 22.29 0.22 -0.89 16 23 C -0.14 -2.72 10.03 22.28 0.22 -2.49 16 24 C 0.06 1.77 7.30 22.35 0.16 1.94 16 25 F -0.16 -4.87 17.27 44.97 0.78 -4.09 16 26 C -0.15 -4.73 10.02 22.35 0.22 -4.51 16 27 C -0.10 -2.65 5.75 -19.60 -0.11 -2.76 16 28 C 0.13 6.63 5.38 86.85 0.47 7.09 16 29 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 30 H 0.37 20.26 7.57 -74.06 -0.56 19.70 16 31 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.09 3.04 8.04 -2.39 -0.02 3.02 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.41 8.67 7.57 -92.71 -0.70 7.97 16 36 H 0.11 1.01 8.04 -2.39 -0.02 0.99 16 37 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.17 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.10 3.86 7.87 -2.91 -0.02 3.84 16 43 H 0.03 1.73 8.03 -2.39 -0.02 1.71 16 44 H 0.04 2.46 7.32 -2.39 -0.02 2.44 16 Total: -1.00 -74.54 366.10 0.24 -74.30 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.21 Total: 38.02 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 4.53 Total: 14.72 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.85 Total: -102.68 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -2.03 Total: -64.80 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -74.54 0.24 -74.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591952895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.456 kcal (2) G-P(sol) polarization free energy of solvation -74.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds