Wall clock time and date at job start Tue Mar 31 2020 18:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00274 * 2 1 4 4 H 1.48503 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46988 * 300.00196 * 3 2 1 6 6 H 1.48500 * 109.47408 * 59.99902 * 3 2 1 7 7 C 1.37874 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99909 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.91610 * 62.44940 * 9 7 2 11 11 C 1.55157 * 111.00441 * 186.34700 * 9 7 2 12 12 C 1.54334 * 103.02330 * 153.37881 * 11 9 7 13 13 N 1.47029 * 107.26301 * 338.14429 * 12 11 9 14 14 C 1.34777 * 125.64604 * 178.85023 * 13 12 11 15 15 O 1.21584 * 119.99940 * 179.69523 * 14 13 12 16 16 N 1.34777 * 119.99969 * 359.68340 * 14 13 12 17 17 C 1.46500 * 119.99970 * 180.02562 * 16 14 13 18 18 H 1.09009 * 115.55929 * 9.31453 * 17 16 14 19 19 C 1.52996 * 117.50037 * 223.62844 * 17 16 14 20 20 C 1.52997 * 117.50333 * 155.00381 * 17 16 14 21 21 H 1.09001 * 117.51225 * 0.02562 * 20 17 16 22 22 C 1.50694 * 117.50185 * 214.98226 * 20 17 16 23 23 C 1.38250 * 119.97505 * 119.98717 * 22 20 17 24 24 C 1.38196 * 120.02428 * 180.27926 * 23 22 20 25 25 C 1.38457 * 119.97339 * 359.50816 * 24 23 22 26 26 F 1.35103 * 120.02364 * 180.21557 * 25 24 23 27 27 C 1.38456 * 119.94977 * 0.48564 * 25 24 23 28 28 C 1.38199 * 119.97506 * 359.75344 * 27 25 24 29 29 C 1.47421 * 108.70295 * 358.58158 * 13 12 11 30 30 H 0.97002 * 119.99587 * 359.97438 * 1 2 3 31 31 H 0.96701 * 113.99935 * 297.54944 * 10 9 7 32 32 H 1.08994 * 110.72755 * 271.94216 * 11 9 7 33 33 H 1.09010 * 110.72210 * 35.03827 * 11 9 7 34 34 H 1.08998 * 109.99591 * 218.66986 * 12 11 9 35 35 H 1.08998 * 109.77832 * 97.49597 * 12 11 9 36 36 H 0.96997 * 120.00397 * 0.02562 * 16 14 13 37 37 H 1.09008 * 117.49865 * 145.02089 * 19 17 16 38 38 H 1.09006 * 117.51879 * 359.97438 * 19 17 16 39 39 H 1.08002 * 119.98396 * 359.97438 * 23 22 20 40 40 H 1.08004 * 120.00978 * 179.72210 * 24 23 22 41 41 H 1.08000 * 120.01302 * 179.76430 * 27 25 24 42 42 H 1.07999 * 119.98943 * 179.97438 * 28 27 25 43 43 H 1.09003 * 110.36683 * 143.19112 * 29 13 12 44 44 H 1.08998 * 110.36488 * 265.51760 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4616 -2.6324 -1.1832 11 6 2.2194 -3.7005 0.1613 12 6 1.3296 -4.7798 0.8135 13 7 0.2059 -4.0864 1.4603 14 6 -0.8071 -4.6799 2.1222 15 8 -1.6837 -4.0037 2.6247 16 7 -0.8484 -6.0229 2.2267 17 6 -1.9499 -6.6681 2.9457 18 1 -2.7739 -6.0132 3.2292 19 6 -1.5977 -7.8130 3.8975 20 6 -2.2920 -8.1104 2.5670 21 1 -1.6974 -8.5798 1.7832 22 6 -3.7422 -8.5171 2.6145 23 6 -4.3708 -8.9688 1.4690 24 6 -5.7024 -9.3365 1.5101 25 6 -6.4041 -9.2620 2.7013 26 9 -7.7046 -9.6254 2.7436 27 6 -5.7734 -8.8097 3.8479 28 6 -4.4432 -8.4378 3.8034 29 6 0.3744 -2.6342 1.2706 30 1 -0.4850 0.8401 0.0004 31 1 -0.2247 -1.9576 -1.2764 32 1 2.5849 -4.0340 -0.8099 33 1 3.0512 -3.4405 0.8162 34 1 1.9010 -5.3341 1.5579 35 1 0.9546 -5.4601 0.0489 36 1 -0.1490 -6.5624 1.8260 37 1 -2.1900 -7.9114 4.8073 38 1 -0.5465 -8.0868 3.9887 39 1 -3.8224 -9.0296 0.5406 40 1 -6.1944 -9.6850 0.6141 41 1 -6.3209 -8.7476 4.7769 42 1 -3.9512 -8.0845 4.6975 43 1 -0.5934 -2.1570 1.1160 44 1 0.8815 -2.1957 2.1300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592017428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:26 Heat of formation + Delta-G solvation = -67.620558 kcal Electronic energy + Delta-G solvation = -27888.831400 eV Core-core repulsion = 23721.411025 eV Total energy + Delta-G solvation = -4167.420376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.11389 -40.17385 -39.42120 -37.72169 -36.66332 -34.26371 -32.83930 -32.23878 -31.44088 -30.32977 -29.66334 -27.76509 -25.17225 -24.12138 -23.26796 -22.86355 -21.71447 -20.76234 -19.74219 -19.62574 -18.03857 -17.59836 -17.05410 -16.84563 -16.12553 -15.81684 -15.76160 -15.27111 -15.05721 -14.80447 -14.50371 -14.33383 -13.85745 -13.58689 -13.52102 -13.08877 -13.02283 -12.85184 -12.83655 -12.41303 -12.11042 -11.83501 -11.67281 -11.64647 -11.29040 -11.22666 -11.05906 -10.83721 -10.68534 -10.61973 -10.47119 -10.20396 -9.69360 -9.39154 -9.38262 -9.02659 -8.71052 -8.44735 -8.36150 -7.72571 -6.28268 -4.38135 0.82387 0.95409 2.91403 3.17625 3.19933 3.28611 3.31620 3.55481 3.94765 4.01077 4.22683 4.30794 4.41307 4.49000 4.56976 4.64998 4.75695 4.91774 4.96141 4.98778 5.19476 5.36989 5.45235 5.60541 5.64560 5.64952 5.68367 5.79729 5.82217 5.86406 5.97749 5.98518 6.10480 6.25985 6.48182 6.60396 6.67464 6.68971 6.85966 6.92031 7.20823 7.30660 7.58530 7.73763 8.02204 8.46410 8.66257 9.05790 9.29130 9.37356 10.78751 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.002180 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.948072 B =12842.547165 C =13219.427041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.719 3.281 15 O -0.593 6.593 16 N -0.722 5.722 17 C 0.129 3.871 18 H 0.140 0.860 19 C -0.189 4.189 20 C -0.133 4.133 21 H 0.117 0.883 22 C -0.054 4.054 23 C -0.083 4.083 24 C -0.150 4.150 25 C 0.089 3.911 26 F -0.143 7.143 27 C -0.149 4.149 28 C -0.092 4.092 29 C 0.113 3.887 30 H 0.270 0.730 31 H 0.381 0.619 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.395 0.605 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.086 0.914 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.211 -19.320 5.660 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.363 5.363 14 C 0.422 3.578 15 O -0.471 6.471 16 N -0.376 5.376 17 C 0.021 3.979 18 H 0.157 0.843 19 C -0.228 4.228 20 C -0.153 4.153 21 H 0.135 0.865 22 C -0.054 4.054 23 C -0.101 4.101 24 C -0.169 4.169 25 C 0.070 3.930 26 F -0.121 7.121 27 C -0.168 4.168 28 C -0.110 4.110 29 C -0.009 4.009 30 H 0.080 0.920 31 H 0.231 0.769 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.104 0.896 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.707 -19.190 5.959 20.888 hybrid contribution 0.146 0.922 -0.084 0.938 sum -5.561 -18.267 5.874 19.978 Atomic orbital electron populations 1.69730 1.05969 1.27815 1.49439 1.25088 0.95045 0.99782 0.93365 0.86356 0.80025 0.82783 0.77768 1.19604 1.20767 1.20775 1.21482 0.93651 0.90003 1.52452 0.91478 1.19641 0.86639 0.91576 0.81404 1.86099 1.51540 1.57179 1.44316 1.22589 0.97539 0.95166 1.00088 1.21946 0.88291 0.96134 0.95544 1.47949 1.23097 1.09887 1.55350 1.15445 0.81932 0.81077 0.79389 1.90889 1.39535 1.63060 1.53650 1.44521 1.27414 1.05554 1.60086 1.21481 0.92311 0.87621 0.96441 0.84259 1.23683 1.01681 1.03649 0.93742 1.21585 0.92923 1.00423 1.00367 0.86484 1.19146 0.94060 0.98847 0.93383 1.20859 0.93591 0.97325 0.98303 1.21135 0.95252 1.03359 0.97131 1.17740 0.78750 1.01306 0.95207 1.91495 1.33930 1.89472 1.97221 1.21122 0.95788 1.02013 0.97843 1.20963 0.93196 0.98582 0.98215 1.23169 1.02640 0.75453 0.99593 0.92035 0.76889 0.90766 0.90394 0.93091 0.92639 0.77090 0.87644 0.87957 0.84851 0.84688 0.84695 0.84670 0.89561 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 10.69 55.43 0.59 -23.02 16 2 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 3 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -13.74 8.27 -34.44 -0.28 -14.03 16 8 H 0.07 1.68 7.79 -52.49 -0.41 1.27 16 9 C 0.25 5.87 0.87 -89.62 -0.08 5.79 16 10 O -0.58 -14.59 13.16 -35.23 -0.46 -15.05 16 11 C -0.12 -2.21 6.13 -24.89 -0.15 -2.36 16 12 C 0.10 1.73 6.15 -3.05 -0.02 1.72 16 13 N -0.63 -12.63 3.33 -176.23 -0.59 -13.21 16 14 C 0.72 14.24 8.49 -86.92 -0.74 13.51 16 15 O -0.59 -14.10 16.17 5.29 0.09 -14.02 16 16 N -0.72 -10.33 5.53 -58.68 -0.32 -10.65 16 17 C 0.13 1.58 6.06 -67.93 -0.41 1.16 16 18 H 0.14 2.01 7.40 -51.92 -0.38 1.62 16 19 C -0.19 -1.64 9.78 -26.73 -0.26 -1.90 16 20 C -0.13 -1.22 5.96 -91.78 -0.55 -1.77 16 21 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 22 C -0.05 -0.51 5.61 -104.62 -0.59 -1.10 16 23 C -0.08 -0.75 9.73 -39.59 -0.39 -1.14 16 24 C -0.15 -1.38 10.03 -39.52 -0.40 -1.78 16 25 C 0.09 0.90 7.30 -39.42 -0.29 0.61 16 26 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 27 C -0.15 -1.36 10.03 -39.52 -0.40 -1.76 16 28 C -0.09 -0.82 9.29 -39.59 -0.37 -1.19 16 29 C 0.11 2.69 5.38 -2.53 -0.01 2.68 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.38 9.86 7.57 45.56 0.34 10.21 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.40 8.03 -51.92 -0.42 0.98 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.39 4.61 7.81 -40.82 -0.32 4.29 16 37 H 0.11 0.78 6.18 -51.92 -0.32 0.46 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.14 0.98 6.02 -52.49 -0.32 0.67 16 43 H 0.09 2.33 7.33 -51.93 -0.38 1.95 16 44 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -30.45 370.73 -10.25 -40.70 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -5.13 Total: 15.86 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -5.02 Total: 0.18 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.32 Total: -46.89 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.38 Total: -29.07 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.45 -10.25 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592017428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.922 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds