Wall clock time and date at job start Tue Mar 31 2020 18:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00274 * 2 1 4 4 H 1.48503 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46988 * 300.00196 * 3 2 1 6 6 H 1.48500 * 109.47408 * 59.99902 * 3 2 1 7 7 C 1.37874 * 119.99822 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99909 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.91610 * 62.44940 * 9 7 2 11 11 C 1.55157 * 111.00441 * 186.34700 * 9 7 2 12 12 C 1.54334 * 103.02330 * 153.37881 * 11 9 7 13 13 N 1.47029 * 107.26301 * 338.14429 * 12 11 9 14 14 C 1.34777 * 125.64604 * 178.85023 * 13 12 11 15 15 O 1.21584 * 119.99940 * 179.69523 * 14 13 12 16 16 N 1.34777 * 119.99969 * 359.68340 * 14 13 12 17 17 C 1.46500 * 119.99970 * 180.02562 * 16 14 13 18 18 H 1.09009 * 115.55929 * 9.31453 * 17 16 14 19 19 C 1.52996 * 117.50037 * 223.62844 * 17 16 14 20 20 C 1.52997 * 117.50333 * 155.00381 * 17 16 14 21 21 H 1.09001 * 117.51225 * 0.02562 * 20 17 16 22 22 C 1.50694 * 117.50185 * 214.98226 * 20 17 16 23 23 C 1.38250 * 119.97505 * 119.98717 * 22 20 17 24 24 C 1.38196 * 120.02428 * 180.27926 * 23 22 20 25 25 C 1.38457 * 119.97339 * 359.50816 * 24 23 22 26 26 F 1.35103 * 120.02364 * 180.21557 * 25 24 23 27 27 C 1.38456 * 119.94977 * 0.48564 * 25 24 23 28 28 C 1.38199 * 119.97506 * 359.75344 * 27 25 24 29 29 C 1.47421 * 108.70295 * 358.58158 * 13 12 11 30 30 H 0.97002 * 119.99587 * 359.97438 * 1 2 3 31 31 H 0.96701 * 113.99935 * 297.54944 * 10 9 7 32 32 H 1.08994 * 110.72755 * 271.94216 * 11 9 7 33 33 H 1.09010 * 110.72210 * 35.03827 * 11 9 7 34 34 H 1.08998 * 109.99591 * 218.66986 * 12 11 9 35 35 H 1.08998 * 109.77832 * 97.49597 * 12 11 9 36 36 H 0.96997 * 120.00397 * 0.02562 * 16 14 13 37 37 H 1.09008 * 117.49865 * 145.02089 * 19 17 16 38 38 H 1.09006 * 117.51879 * 359.97438 * 19 17 16 39 39 H 1.08002 * 119.98396 * 359.97438 * 23 22 20 40 40 H 1.08004 * 120.00978 * 179.72210 * 24 23 22 41 41 H 1.08000 * 120.01302 * 179.76430 * 27 25 24 42 42 H 1.07999 * 119.98943 * 179.97438 * 28 27 25 43 43 H 1.09003 * 110.36683 * 143.19112 * 29 13 12 44 44 H 1.08998 * 110.36488 * 265.51760 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4616 -2.6324 -1.1832 11 6 2.2194 -3.7005 0.1613 12 6 1.3296 -4.7798 0.8135 13 7 0.2059 -4.0864 1.4603 14 6 -0.8071 -4.6799 2.1222 15 8 -1.6837 -4.0037 2.6247 16 7 -0.8484 -6.0229 2.2267 17 6 -1.9499 -6.6681 2.9457 18 1 -2.7739 -6.0132 3.2292 19 6 -1.5977 -7.8130 3.8975 20 6 -2.2920 -8.1104 2.5670 21 1 -1.6974 -8.5798 1.7832 22 6 -3.7422 -8.5171 2.6145 23 6 -4.3708 -8.9688 1.4690 24 6 -5.7024 -9.3365 1.5101 25 6 -6.4041 -9.2620 2.7013 26 9 -7.7046 -9.6254 2.7436 27 6 -5.7734 -8.8097 3.8479 28 6 -4.4432 -8.4378 3.8034 29 6 0.3744 -2.6342 1.2706 30 1 -0.4850 0.8401 0.0004 31 1 -0.2247 -1.9576 -1.2764 32 1 2.5849 -4.0340 -0.8099 33 1 3.0512 -3.4405 0.8162 34 1 1.9010 -5.3341 1.5579 35 1 0.9546 -5.4601 0.0489 36 1 -0.1490 -6.5624 1.8260 37 1 -2.1900 -7.9114 4.8073 38 1 -0.5465 -8.0868 3.9887 39 1 -3.8224 -9.0296 0.5406 40 1 -6.1944 -9.6850 0.6141 41 1 -6.3209 -8.7476 4.7769 42 1 -3.9512 -8.0845 4.6975 43 1 -0.5934 -2.1570 1.1160 44 1 0.8815 -2.1957 2.1300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592017428.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:25 Heat of formation + Delta-G solvation = -87.381192 kcal Electronic energy + Delta-G solvation = -27889.688286 eV Core-core repulsion = 23721.411025 eV Total energy + Delta-G solvation = -4168.277261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.90504 -41.37662 -40.47938 -39.15585 -37.81359 -36.03040 -34.22041 -34.08516 -32.12269 -31.69432 -30.68929 -29.48045 -27.00610 -24.84028 -24.52755 -23.80402 -22.76007 -21.56977 -21.42302 -21.03852 -19.26400 -18.87435 -18.65130 -17.79524 -17.16706 -16.94650 -16.79414 -16.62487 -16.59130 -16.15341 -15.83896 -15.50179 -15.08354 -14.77276 -14.62183 -14.49830 -14.35199 -13.92598 -13.68813 -13.58740 -13.50701 -13.30880 -13.20491 -12.85881 -12.53571 -12.50635 -12.37196 -12.30033 -12.18388 -12.06693 -11.96304 -11.46478 -11.32918 -11.17386 -10.66244 -10.30621 -10.07826 -10.05406 -9.47562 -9.14891 -8.23391 -6.40502 0.08181 0.27142 1.41219 1.44953 1.55530 1.61667 2.07172 2.38967 2.50172 2.99143 3.03012 3.14291 3.29127 3.64928 3.76765 3.77599 3.81904 3.94582 4.01567 4.08586 4.19475 4.21266 4.31018 4.36149 4.50264 4.63056 4.73055 4.78530 4.91140 4.98049 5.00414 5.09236 5.12348 5.12749 5.18005 5.28713 5.31074 5.40280 5.48494 5.53566 5.59845 5.77604 5.91253 6.06711 6.19292 6.67384 7.06510 7.28766 7.36274 7.57581 8.81765 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.002180 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.948072 B =12842.547165 C =13219.427041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.633 5.633 14 C 0.713 3.287 15 O -0.644 6.644 16 N -0.699 5.699 17 C 0.089 3.911 18 H 0.109 0.891 19 C -0.162 4.162 20 C -0.110 4.110 21 H 0.137 0.863 22 C -0.068 4.068 23 C -0.088 4.088 24 C -0.156 4.156 25 C 0.070 3.930 26 F -0.151 7.151 27 C -0.155 4.155 28 C -0.095 4.095 29 C 0.128 3.872 30 H 0.268 0.732 31 H 0.372 0.628 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.412 0.588 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.042 0.958 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 -21.632 5.902 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.191 3.809 10 O -0.395 6.395 11 C -0.149 4.149 12 C -0.015 4.015 13 N -0.369 5.369 14 C 0.415 3.585 15 O -0.527 6.527 16 N -0.353 5.353 17 C -0.017 4.017 18 H 0.127 0.873 19 C -0.201 4.201 20 C -0.130 4.130 21 H 0.154 0.846 22 C -0.068 4.068 23 C -0.105 4.105 24 C -0.175 4.175 25 C 0.051 3.949 26 F -0.130 7.130 27 C -0.174 4.174 28 C -0.113 4.113 29 C 0.004 3.996 30 H 0.077 0.923 31 H 0.221 0.779 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.249 0.751 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.168 0.832 43 H 0.061 0.939 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.911 -21.592 6.194 22.801 hybrid contribution -0.462 1.594 -0.141 1.666 sum -4.373 -19.998 6.053 21.346 Atomic orbital electron populations 1.69859 1.07190 1.28248 1.50173 1.25842 0.95735 1.02887 0.93187 0.85420 0.79239 0.79037 0.77400 1.18631 1.20713 1.20968 1.21830 0.93970 0.91193 1.52187 0.91212 1.19884 0.87218 0.93245 0.80586 1.86090 1.51422 1.56770 1.45172 1.22595 0.97188 0.93745 1.01338 1.22142 0.87078 0.95417 0.96889 1.47862 1.24436 1.08641 1.55933 1.15672 0.81171 0.82642 0.79025 1.90848 1.41384 1.64737 1.55696 1.44233 1.28208 1.03387 1.59476 1.21536 0.91781 0.88579 0.99844 0.87319 1.23799 1.02971 0.99379 0.93904 1.21608 0.93052 0.97037 1.01282 0.84557 1.19339 0.94469 0.99217 0.93781 1.21107 0.93622 0.96877 0.98936 1.21359 0.95507 1.03179 0.97438 1.18026 0.78646 1.02172 0.96083 1.91470 1.34529 1.89677 1.97304 1.21349 0.96103 1.01650 0.98253 1.21194 0.93171 0.98119 0.98827 1.22657 1.00031 0.77756 0.99109 0.92270 0.77947 0.89607 0.89265 0.88904 0.90712 0.75112 0.86260 0.86112 0.83203 0.83325 0.83298 0.83151 0.93917 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.21 10.69 21.45 0.23 -49.98 16 2 C 0.02 1.27 5.29 84.65 0.45 1.72 16 3 Si 0.96 41.68 29.54 68.60 2.03 43.70 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.55 -28.45 8.27 25.60 0.21 -28.24 16 8 H 0.07 3.46 7.79 -2.91 -0.02 3.44 16 9 C 0.23 10.98 0.87 -10.15 -0.01 10.97 16 10 O -0.59 -29.81 13.16 -148.98 -1.96 -31.77 16 11 C -0.11 -4.00 6.13 31.79 0.19 -3.80 16 12 C 0.11 3.23 6.15 86.73 0.53 3.76 16 13 N -0.63 -25.23 3.33 -829.73 -2.76 -27.99 16 14 C 0.71 28.23 8.49 179.05 1.52 29.75 16 15 O -0.64 -31.90 16.17 -3.98 -0.06 -31.97 16 16 N -0.70 -18.72 5.53 -457.82 -2.53 -21.25 16 17 C 0.09 2.04 6.06 44.99 0.27 2.32 16 18 H 0.11 3.20 7.40 -2.38 -0.02 3.19 16 19 C -0.16 -2.28 9.78 30.59 0.30 -1.98 16 20 C -0.11 -1.70 5.96 -11.54 -0.07 -1.77 16 21 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 22 C -0.07 -1.15 5.61 -19.86 -0.11 -1.26 16 23 C -0.09 -1.43 9.73 22.26 0.22 -1.22 16 24 C -0.16 -2.71 10.03 22.31 0.22 -2.49 16 25 C 0.07 1.36 7.30 22.37 0.16 1.53 16 26 F -0.15 -3.24 17.27 44.97 0.78 -2.46 16 27 C -0.15 -2.67 10.03 22.31 0.22 -2.45 16 28 C -0.10 -1.55 9.29 22.26 0.21 -1.35 16 29 C 0.13 6.29 5.38 86.86 0.47 6.76 16 30 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.37 20.03 7.57 -74.06 -0.56 19.47 16 32 H 0.09 2.88 8.14 -2.39 -0.02 2.87 16 33 H 0.09 2.99 8.03 -2.38 -0.02 2.97 16 34 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.41 8.15 7.81 -92.71 -0.72 7.43 16 37 H 0.12 1.37 6.18 -2.38 -0.01 1.35 16 38 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.15 1.88 6.02 -2.91 -0.02 1.86 16 43 H 0.04 2.44 7.33 -2.39 -0.02 2.42 16 44 H 0.04 2.02 8.03 -2.39 -0.02 2.00 16 Total: -1.00 -69.63 370.73 0.28 -69.35 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: -0.23 Total: 40.11 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 4.79 Total: 12.26 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -5.06 Total: -99.22 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -2.03 Total: -63.74 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -69.63 0.28 -69.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592017428.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.035 kcal (2) G-P(sol) polarization free energy of solvation -69.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds