Wall clock time and date at job start Tue Mar 31 2020 18:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00446 * 2 1 4 4 H 1.48502 * 109.46937 * 274.99532 * 3 2 1 5 5 H 1.48493 * 109.47115 * 34.99371 * 3 2 1 6 6 H 1.48498 * 109.47227 * 154.99900 * 3 2 1 7 7 C 1.37885 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00140 * 184.92754 * 7 2 1 9 9 C 1.50696 * 119.99780 * 4.93203 * 7 2 1 10 10 O 1.42902 * 110.88757 * 298.63008 * 9 7 2 11 11 C 1.55159 * 111.00276 * 174.75231 * 9 7 2 12 12 C 1.54326 * 102.94226 * 206.38315 * 11 9 7 13 13 N 1.47027 * 107.26998 * 22.19091 * 12 11 9 14 14 C 1.34771 * 125.64721 * 181.02222 * 13 12 11 15 15 O 1.21584 * 120.00345 * 179.75462 * 14 13 12 16 16 N 1.34776 * 120.00171 * 0.02625 * 14 13 12 17 17 C 1.46500 * 120.00507 * 179.72610 * 16 14 13 18 18 H 1.09003 * 115.54340 * 9.41411 * 17 16 14 19 19 C 1.52999 * 117.50124 * 223.74801 * 17 16 14 20 20 C 1.52999 * 117.50116 * 155.08388 * 17 16 14 21 21 H 1.08995 * 117.50140 * 0.02562 * 20 17 16 22 22 C 1.50706 * 117.49658 * 214.97963 * 20 17 16 23 23 C 1.38221 * 120.01305 * 300.00036 * 22 20 17 24 24 C 1.38219 * 120.02146 * 179.97438 * 23 22 20 25 25 C 1.38261 * 120.05633 * 0.02562 * 24 23 22 26 26 C 1.38179 * 120.02461 * 0.02562 * 25 24 23 27 27 C 1.38436 * 120.01136 * 119.72959 * 22 20 17 28 28 F 1.35105 * 120.02313 * 359.97438 * 27 22 20 29 29 C 1.47420 * 108.70079 * 1.28987 * 13 12 11 30 30 H 0.97000 * 119.99353 * 0.02562 * 1 2 3 31 31 H 0.96700 * 113.99914 * 56.11688 * 10 9 7 32 32 H 1.09002 * 110.72143 * 88.02112 * 11 9 7 33 33 H 1.08997 * 110.71916 * 324.74453 * 11 9 7 34 34 H 1.08998 * 109.88116 * 262.77815 * 12 11 9 35 35 H 1.09003 * 110.01220 * 141.68165 * 12 11 9 36 36 H 0.97003 * 120.00056 * 359.72240 * 16 14 13 37 37 H 1.08998 * 117.49639 * 359.97438 * 19 17 16 38 38 H 1.08996 * 117.49920 * 144.99392 * 19 17 16 39 39 H 1.08006 * 119.98522 * 0.02562 * 23 22 20 40 40 H 1.08003 * 119.97012 * 180.02562 * 24 23 22 41 41 H 1.08002 * 119.99198 * 179.97438 * 25 24 23 42 42 H 1.07994 * 120.01510 * 179.97438 * 26 25 24 43 43 H 1.08995 * 110.36913 * 94.48565 * 29 13 12 44 44 H 1.09007 * 110.36342 * 216.80260 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5036 2.6199 0.8029 6 1 3.5956 1.4118 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1959 0.0809 9 6 1.2551 -2.4968 -0.1111 10 8 0.3615 -2.6666 0.9911 11 6 2.2352 -3.6945 -0.2219 12 6 1.4058 -4.7506 -0.9823 13 7 0.3483 -4.0339 -1.7102 14 6 -0.5999 -4.6036 -2.4801 15 8 -1.4309 -3.9101 -3.0340 16 7 -0.6303 -5.9424 -2.6318 17 6 -1.6646 -6.5622 -3.4638 18 1 -2.2708 -5.8727 -4.0514 19 6 -2.3491 -7.8183 -2.9212 20 6 -1.3526 -7.9283 -4.0780 21 1 -0.3780 -8.3661 -3.8628 22 6 -1.9075 -8.2178 -5.4490 23 6 -3.2733 -8.1976 -5.6605 24 6 -3.7823 -8.4626 -6.9180 25 6 -2.9263 -8.7487 -7.9654 26 6 -1.5607 -8.7706 -7.7560 27 6 -1.0492 -8.4987 -6.4982 28 9 0.2863 -8.5128 -6.2939 29 6 0.5010 -2.5885 -1.4636 30 1 -0.4849 0.8401 -0.0004 31 1 -0.2701 -1.9425 1.1005 32 1 2.5111 -4.0599 0.7672 33 1 3.1213 -3.4162 -0.7925 34 1 0.9601 -5.4509 -0.2759 35 1 2.0413 -5.2882 -1.6861 36 1 0.0327 -6.4958 -2.1900 37 1 -2.0295 -8.1839 -1.9453 38 1 -3.4055 -7.9553 -3.1518 39 1 -3.9428 -7.9738 -4.8432 40 1 -4.8496 -8.4462 -7.0824 41 1 -3.3252 -8.9561 -8.9474 42 1 -0.8923 -8.9945 -8.5742 43 1 1.0866 -2.1277 -2.2591 44 1 -0.4761 -2.1117 -1.3858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592029909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:29 Heat of formation + Delta-G solvation = -66.387317 kcal Electronic energy + Delta-G solvation = -28220.355028 eV Core-core repulsion = 24052.988130 eV Total energy + Delta-G solvation = -4167.366898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.05689 -40.08202 -39.37014 -37.75522 -36.72136 -34.25041 -32.94428 -32.18616 -30.84224 -30.59231 -29.76488 -27.76762 -25.16044 -24.42288 -23.09066 -22.66077 -21.70052 -20.76682 -19.71731 -19.60143 -18.01000 -17.55841 -17.06024 -16.81268 -16.17456 -15.92888 -15.70231 -15.18686 -15.05874 -14.61868 -14.45487 -14.39461 -14.20200 -13.47433 -13.41247 -13.05223 -12.95786 -12.79984 -12.74211 -12.28033 -12.11074 -11.77499 -11.63371 -11.59171 -11.42676 -11.28989 -11.05698 -10.79485 -10.72568 -10.60088 -10.49321 -10.18112 -9.67867 -9.37917 -9.27847 -9.00227 -8.68886 -8.49187 -8.33758 -7.69515 -6.28805 -4.37972 0.84772 0.91309 2.94736 3.19203 3.21470 3.29022 3.31516 3.56422 3.90328 4.05905 4.23307 4.29566 4.43075 4.45292 4.61879 4.67976 4.77277 4.92302 4.99036 5.02564 5.08196 5.40191 5.50382 5.56560 5.64121 5.70973 5.75189 5.78385 5.83656 5.88471 6.01784 6.07823 6.11343 6.14904 6.50766 6.60153 6.69811 6.71305 6.87166 6.93809 7.22149 7.34197 7.59700 7.74517 8.01446 8.48697 8.66375 9.08070 9.30779 9.44583 10.78481 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021965 B = 0.002332 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.437750 B =12003.545772 C =12098.668803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.116 4.116 12 C 0.104 3.896 13 N -0.625 5.625 14 C 0.720 3.280 15 O -0.594 6.594 16 N -0.722 5.722 17 C 0.132 3.868 18 H 0.140 0.860 19 C -0.184 4.184 20 C -0.137 4.137 21 H 0.118 0.882 22 C -0.077 4.077 23 C -0.093 4.093 24 C -0.126 4.126 25 C -0.098 4.098 26 C -0.153 4.153 27 C 0.104 3.896 28 F -0.137 7.137 29 C 0.112 3.888 30 H 0.271 0.729 31 H 0.385 0.615 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.395 0.605 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.058 0.942 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 -18.987 -11.039 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.362 5.362 14 C 0.422 3.578 15 O -0.473 6.473 16 N -0.375 5.375 17 C 0.024 3.976 18 H 0.158 0.842 19 C -0.223 4.223 20 C -0.157 4.157 21 H 0.135 0.865 22 C -0.078 4.078 23 C -0.111 4.111 24 C -0.144 4.144 25 C -0.116 4.116 26 C -0.172 4.172 27 C 0.085 3.915 28 F -0.115 7.115 29 C -0.010 4.010 30 H 0.081 0.919 31 H 0.236 0.764 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.230 0.770 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.076 0.924 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.084 -18.867 -11.383 22.614 hybrid contribution 0.764 0.991 0.041 1.252 sum -4.320 -17.877 -11.342 21.608 Atomic orbital electron populations 1.69640 1.06022 1.27978 1.49411 1.25095 0.95028 0.99799 0.93349 0.86386 0.79844 0.82490 0.78183 1.20429 1.20994 1.19666 1.21480 0.94026 0.90114 1.52127 0.91443 1.19649 0.85756 0.91484 0.82300 1.86069 1.51171 1.50797 1.51346 1.22596 0.97876 0.95443 0.99481 1.21950 0.89537 0.95887 0.94548 1.47898 1.29414 1.10073 1.48768 1.15432 0.81476 0.81124 0.79735 1.90880 1.41272 1.61802 1.53298 1.44515 1.33492 1.05943 1.53575 1.21464 0.92607 0.87903 0.95603 0.84226 1.23691 0.98387 1.02724 0.97483 1.21501 1.00806 1.02857 0.90514 0.86452 1.19142 0.93426 1.01897 0.93377 1.21017 0.93734 0.98515 0.97817 1.21199 1.00313 1.00220 0.92690 1.21011 0.92295 0.98825 0.99504 1.21145 0.96715 1.03542 0.95749 1.17516 0.77248 1.02672 0.94109 1.91500 1.30409 1.93989 1.95637 1.23190 1.02560 0.75989 0.99234 0.91905 0.76383 0.90738 0.90391 0.92612 0.93114 0.77044 0.87793 0.87517 0.84668 0.85226 0.85092 0.84762 0.92413 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.80 10.71 55.43 0.59 -23.20 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.74 16 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.94 8.26 -34.44 -0.28 -14.22 16 8 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 9 C 0.25 6.01 0.89 -89.51 -0.08 5.93 16 10 O -0.58 -14.95 13.20 -35.23 -0.47 -15.41 16 11 C -0.12 -2.28 6.12 -24.89 -0.15 -2.43 16 12 C 0.10 1.82 6.15 -3.06 -0.02 1.80 16 13 N -0.63 -13.07 3.32 -176.10 -0.59 -13.66 16 14 C 0.72 14.85 8.49 -86.92 -0.74 14.12 16 15 O -0.59 -14.50 16.16 5.29 0.09 -14.41 16 16 N -0.72 -11.14 5.53 -58.68 -0.32 -11.46 16 17 C 0.13 1.76 6.06 -67.93 -0.41 1.35 16 18 H 0.14 2.12 7.40 -51.93 -0.38 1.73 16 19 C -0.18 -1.81 9.79 -26.69 -0.26 -2.07 16 20 C -0.14 -1.48 5.72 -91.73 -0.52 -2.00 16 21 H 0.12 1.24 7.87 -51.93 -0.41 0.83 16 22 C -0.08 -0.83 5.62 -104.55 -0.59 -1.41 16 23 C -0.09 -0.83 9.30 -39.59 -0.37 -1.20 16 24 C -0.13 -0.96 10.04 -39.58 -0.40 -1.36 16 25 C -0.10 -0.74 10.04 -39.59 -0.40 -1.14 16 26 C -0.15 -1.37 10.03 -39.51 -0.40 -1.77 16 27 C 0.10 1.16 7.25 -39.42 -0.29 0.87 16 28 F -0.14 -1.70 16.62 2.25 0.04 -1.66 16 29 C 0.11 2.73 5.52 -2.41 -0.01 2.71 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.38 10.21 7.18 45.56 0.33 10.54 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 5.12 7.81 -40.82 -0.32 4.80 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 0.87 6.18 -51.93 -0.32 0.55 16 39 H 0.14 1.00 6.02 -52.48 -0.32 0.68 16 40 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.06 1.44 8.04 -51.93 -0.42 1.03 16 44 H 0.08 2.29 7.50 -51.92 -0.39 1.90 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -30.97 369.80 -10.27 -41.23 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -5.15 Total: 16.82 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -5.01 Total: 0.91 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.32 Total: -48.32 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.38 Total: -29.82 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.97 -10.27 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592029909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.155 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds