Wall clock time and date at job start Tue Mar 31 2020 18:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00446 * 2 1 4 4 H 1.48502 * 109.46937 * 274.99532 * 3 2 1 5 5 H 1.48493 * 109.47115 * 34.99371 * 3 2 1 6 6 H 1.48498 * 109.47227 * 154.99900 * 3 2 1 7 7 C 1.37885 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00140 * 184.92754 * 7 2 1 9 9 C 1.50696 * 119.99780 * 4.93203 * 7 2 1 10 10 O 1.42902 * 110.88757 * 298.63008 * 9 7 2 11 11 C 1.55159 * 111.00276 * 174.75231 * 9 7 2 12 12 C 1.54326 * 102.94226 * 206.38315 * 11 9 7 13 13 N 1.47027 * 107.26998 * 22.19091 * 12 11 9 14 14 C 1.34771 * 125.64721 * 181.02222 * 13 12 11 15 15 O 1.21584 * 120.00345 * 179.75462 * 14 13 12 16 16 N 1.34776 * 120.00171 * 0.02625 * 14 13 12 17 17 C 1.46500 * 120.00507 * 179.72610 * 16 14 13 18 18 H 1.09003 * 115.54340 * 9.41411 * 17 16 14 19 19 C 1.52999 * 117.50124 * 223.74801 * 17 16 14 20 20 C 1.52999 * 117.50116 * 155.08388 * 17 16 14 21 21 H 1.08995 * 117.50140 * 0.02562 * 20 17 16 22 22 C 1.50706 * 117.49658 * 214.97963 * 20 17 16 23 23 C 1.38221 * 120.01305 * 300.00036 * 22 20 17 24 24 C 1.38219 * 120.02146 * 179.97438 * 23 22 20 25 25 C 1.38261 * 120.05633 * 0.02562 * 24 23 22 26 26 C 1.38179 * 120.02461 * 0.02562 * 25 24 23 27 27 C 1.38436 * 120.01136 * 119.72959 * 22 20 17 28 28 F 1.35105 * 120.02313 * 359.97438 * 27 22 20 29 29 C 1.47420 * 108.70079 * 1.28987 * 13 12 11 30 30 H 0.97000 * 119.99353 * 0.02562 * 1 2 3 31 31 H 0.96700 * 113.99914 * 56.11688 * 10 9 7 32 32 H 1.09002 * 110.72143 * 88.02112 * 11 9 7 33 33 H 1.08997 * 110.71916 * 324.74453 * 11 9 7 34 34 H 1.08998 * 109.88116 * 262.77815 * 12 11 9 35 35 H 1.09003 * 110.01220 * 141.68165 * 12 11 9 36 36 H 0.97003 * 120.00056 * 359.72240 * 16 14 13 37 37 H 1.08998 * 117.49639 * 359.97438 * 19 17 16 38 38 H 1.08996 * 117.49920 * 144.99392 * 19 17 16 39 39 H 1.08006 * 119.98522 * 0.02562 * 23 22 20 40 40 H 1.08003 * 119.97012 * 180.02562 * 24 23 22 41 41 H 1.08002 * 119.99198 * 179.97438 * 25 24 23 42 42 H 1.07994 * 120.01510 * 179.97438 * 26 25 24 43 43 H 1.08995 * 110.36913 * 94.48565 * 29 13 12 44 44 H 1.09007 * 110.36342 * 216.80260 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5036 2.6199 0.8029 6 1 3.5956 1.4118 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 3.0815 -1.1959 0.0809 9 6 1.2551 -2.4968 -0.1111 10 8 0.3615 -2.6666 0.9911 11 6 2.2352 -3.6945 -0.2219 12 6 1.4058 -4.7506 -0.9823 13 7 0.3483 -4.0339 -1.7102 14 6 -0.5999 -4.6036 -2.4801 15 8 -1.4309 -3.9101 -3.0340 16 7 -0.6303 -5.9424 -2.6318 17 6 -1.6646 -6.5622 -3.4638 18 1 -2.2708 -5.8727 -4.0514 19 6 -2.3491 -7.8183 -2.9212 20 6 -1.3526 -7.9283 -4.0780 21 1 -0.3780 -8.3661 -3.8628 22 6 -1.9075 -8.2178 -5.4490 23 6 -3.2733 -8.1976 -5.6605 24 6 -3.7823 -8.4626 -6.9180 25 6 -2.9263 -8.7487 -7.9654 26 6 -1.5607 -8.7706 -7.7560 27 6 -1.0492 -8.4987 -6.4982 28 9 0.2863 -8.5128 -6.2939 29 6 0.5010 -2.5885 -1.4636 30 1 -0.4849 0.8401 -0.0004 31 1 -0.2701 -1.9425 1.1005 32 1 2.5111 -4.0599 0.7672 33 1 3.1213 -3.4162 -0.7925 34 1 0.9601 -5.4509 -0.2759 35 1 2.0413 -5.2882 -1.6861 36 1 0.0327 -6.4958 -2.1900 37 1 -2.0295 -8.1839 -1.9453 38 1 -3.4055 -7.9553 -3.1518 39 1 -3.9428 -7.9738 -4.8432 40 1 -4.8496 -8.4462 -7.0824 41 1 -3.3252 -8.9561 -8.9474 42 1 -0.8923 -8.9945 -8.5742 43 1 1.0866 -2.1277 -2.2591 44 1 -0.4761 -2.1117 -1.3858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592029909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:29 Heat of formation + Delta-G solvation = -86.659217 kcal Electronic energy + Delta-G solvation = -28221.234083 eV Core-core repulsion = 24052.988130 eV Total energy + Delta-G solvation = -4168.245954 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.90182 -41.40640 -40.39281 -39.18943 -37.96401 -36.07489 -34.23759 -34.19314 -31.85495 -31.44379 -31.02959 -29.53861 -27.02871 -25.15840 -24.54514 -23.47683 -22.82513 -21.61805 -21.44816 -21.09198 -19.31454 -18.93713 -18.61514 -17.80669 -17.18318 -16.98315 -16.84844 -16.69740 -16.59143 -16.19882 -15.85731 -15.28716 -15.10313 -14.99236 -14.78288 -14.64900 -14.21113 -13.84570 -13.78546 -13.52524 -13.45664 -13.35033 -13.03095 -12.86841 -12.60174 -12.49867 -12.33647 -12.32776 -12.21204 -12.13448 -12.10833 -11.56263 -11.39098 -11.20977 -10.65147 -10.33482 -10.20216 -9.82309 -9.53184 -9.22858 -8.26071 -6.42544 0.14547 0.24661 1.41340 1.44351 1.53771 1.57105 2.01611 2.37960 2.54742 2.91429 3.00885 3.04708 3.31152 3.55516 3.66128 3.76045 3.79041 3.95493 4.06549 4.09023 4.15661 4.19581 4.31792 4.37816 4.43185 4.58178 4.68201 4.74712 4.86340 4.90564 5.04135 5.04658 5.08530 5.11423 5.22792 5.26796 5.37130 5.41075 5.46319 5.46991 5.52231 5.76005 5.95250 6.01932 6.13078 6.64975 7.00084 7.28674 7.38162 7.51051 8.79659 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021965 B = 0.002332 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.437750 B =12003.545772 C =12098.668803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.965 3.035 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.111 4.111 12 C 0.106 3.894 13 N -0.632 5.632 14 C 0.714 3.286 15 O -0.642 6.642 16 N -0.702 5.702 17 C 0.095 3.905 18 H 0.114 0.886 19 C -0.156 4.156 20 C -0.120 4.120 21 H 0.120 0.880 22 C -0.099 4.099 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.095 4.095 26 C -0.160 4.160 27 C 0.074 3.926 28 F -0.152 7.152 29 C 0.126 3.874 30 H 0.270 0.730 31 H 0.376 0.624 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.410 0.590 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.148 0.852 43 H 0.041 0.959 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 -21.187 -11.608 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.192 3.808 10 O -0.398 6.398 11 C -0.148 4.148 12 C -0.016 4.016 13 N -0.368 5.368 14 C 0.416 3.584 15 O -0.525 6.525 16 N -0.356 5.356 17 C -0.012 4.012 18 H 0.132 0.868 19 C -0.194 4.194 20 C -0.140 4.140 21 H 0.138 0.862 22 C -0.100 4.100 23 C -0.118 4.118 24 C -0.143 4.143 25 C -0.112 4.112 26 C -0.178 4.178 27 C 0.055 3.945 28 F -0.131 7.131 29 C 0.002 3.998 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.247 0.753 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.167 0.833 40 H 0.175 0.825 41 H 0.179 0.821 42 H 0.166 0.834 43 H 0.059 0.941 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.920 -21.154 -11.944 24.786 hybrid contribution 0.646 1.613 0.131 1.743 sum -4.274 -19.540 -11.813 23.230 Atomic orbital electron populations 1.69759 1.07245 1.28487 1.50014 1.25858 0.95737 1.02928 0.93083 0.85435 0.78911 0.78698 0.77955 1.20463 1.20891 1.18759 1.21813 0.94356 0.91219 1.52058 0.91124 1.19888 0.86223 0.93186 0.81464 1.86058 1.51253 1.50376 1.52066 1.22600 0.97413 0.94004 1.00816 1.22138 0.88869 0.95269 0.95331 1.47833 1.30559 1.08988 1.49375 1.15646 0.80867 0.82541 0.79364 1.90836 1.43086 1.63387 1.55152 1.44273 1.34097 1.03973 1.53207 1.21548 0.93529 0.88725 0.97412 0.86771 1.23811 0.99372 0.98434 0.97775 1.21451 1.01360 0.99863 0.91303 0.86237 1.19280 0.94307 1.03189 0.93196 1.21281 0.93201 0.98239 0.99075 1.21601 1.01869 0.98727 0.92059 1.21424 0.91592 0.97312 1.00900 1.21431 0.97868 1.03177 0.95344 1.17891 0.76816 1.04463 0.95365 1.91452 1.31471 1.94333 1.95813 1.22731 0.99869 0.78050 0.99147 0.92059 0.77426 0.89496 0.89239 0.90711 0.89370 0.75312 0.86365 0.85552 0.83345 0.82468 0.82088 0.83406 0.94103 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.48 10.71 21.45 0.23 -50.25 16 2 C 0.02 1.31 5.26 84.66 0.45 1.75 16 3 Si 0.96 41.99 29.54 68.60 2.03 44.02 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.56 -29.00 8.26 25.60 0.21 -28.78 16 8 H 0.07 3.55 7.79 -2.91 -0.02 3.52 16 9 C 0.23 11.35 0.89 -10.07 -0.01 11.35 16 10 O -0.59 -30.67 13.20 -148.98 -1.97 -32.64 16 11 C -0.11 -4.17 6.12 31.78 0.19 -3.97 16 12 C 0.11 3.47 6.15 86.73 0.53 4.00 16 13 N -0.63 -26.55 3.32 -829.32 -2.76 -29.30 16 14 C 0.71 29.96 8.49 179.06 1.52 31.48 16 15 O -0.64 -32.84 16.16 -3.98 -0.06 -32.91 16 16 N -0.70 -21.23 5.53 -457.82 -2.53 -23.76 16 17 C 0.09 2.48 6.06 44.99 0.27 2.76 16 18 H 0.11 3.61 7.40 -2.39 -0.02 3.59 16 19 C -0.16 -2.73 9.79 30.62 0.30 -2.43 16 20 C -0.12 -2.46 5.72 -11.51 -0.07 -2.52 16 21 H 0.12 2.37 7.87 -2.39 -0.02 2.35 16 22 C -0.10 -2.02 5.62 -19.82 -0.11 -2.13 16 23 C -0.10 -1.61 9.30 22.26 0.21 -1.40 16 24 C -0.12 -1.57 10.04 22.27 0.22 -1.34 16 25 C -0.09 -1.17 10.04 22.26 0.22 -0.95 16 26 C -0.16 -2.65 10.03 22.31 0.22 -2.42 16 27 C 0.07 1.60 7.25 22.37 0.16 1.77 16 28 F -0.15 -3.79 16.62 44.97 0.75 -3.04 16 29 C 0.13 6.34 5.52 86.93 0.48 6.82 16 30 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.38 20.73 7.18 -74.06 -0.53 20.19 16 32 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.09 3.14 8.03 -2.39 -0.02 3.12 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.41 9.82 7.81 -92.71 -0.72 9.10 16 37 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.13 1.72 6.18 -2.39 -0.01 1.70 16 39 H 0.15 1.86 6.02 -2.91 -0.02 1.84 16 40 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.04 2.14 8.04 -2.39 -0.02 2.12 16 44 H 0.04 2.39 7.50 -2.38 -0.02 2.37 16 Total: -1.00 -70.84 369.80 0.29 -70.54 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -0.20 Total: 43.37 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 4.81 Total: 13.97 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -5.06 Total: -103.32 kcal Atomic # 8 Polarization: -63.51 SS G_CDS: -2.03 Total: -65.54 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.75 Total: -3.04 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -70.84 0.29 -70.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592029909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.115 kcal (2) G-P(sol) polarization free energy of solvation -70.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds