Wall clock time and date at job start Tue Mar 31 2020 18:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00021 * 2 1 4 4 H 1.48502 * 109.46616 * 239.99494 * 3 2 1 5 5 H 1.48495 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47098 * 119.99973 * 3 2 1 7 7 C 1.37882 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47377 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47516 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47188 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00288 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00090 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00053 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46944 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46950 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.55916 * 52.33250 * 17 16 15 19 19 C 1.51385 * 110.50658 * 289.66247 * 17 16 15 20 20 O 1.21293 * 126.43911 * 61.35249 * 19 17 16 21 21 N 1.34365 * 107.12477 * 241.35128 * 19 17 16 22 22 C 1.39651 * 112.22464 * 0.02562 * 21 19 17 23 23 C 1.39350 * 130.79934 * 179.97438 * 22 21 19 24 24 C 1.37935 * 120.16774 * 179.97438 * 23 22 21 25 25 C 1.38489 * 120.34407 * 0.02562 * 24 23 22 26 26 F 1.35108 * 120.11009 * 180.02562 * 25 24 23 27 27 C 1.38580 * 119.77903 * 359.97142 * 25 24 23 28 28 C 1.37684 * 119.89232 * 0.02562 * 27 25 24 29 29 H 0.96998 * 119.99926 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.47343 * 59.99918 * 9 7 2 31 31 H 1.08999 * 109.47635 * 300.00052 * 9 7 2 32 32 H 1.09007 * 109.46527 * 59.99938 * 10 9 7 33 33 H 1.08999 * 109.47204 * 300.00835 * 10 9 7 34 34 H 1.09001 * 109.46986 * 60.00056 * 11 10 9 35 35 H 1.08999 * 109.47527 * 300.00590 * 11 10 9 36 36 H 0.97002 * 119.99639 * 0.02562 * 14 12 11 37 37 H 1.08993 * 109.46996 * 60.00142 * 15 14 12 38 38 H 1.08998 * 109.46773 * 300.00336 * 15 14 12 39 39 H 1.08993 * 109.47535 * 60.00009 * 16 15 14 40 40 H 1.09002 * 109.46790 * 299.99570 * 16 15 14 41 41 H 0.97001 * 123.89091 * 180.02562 * 21 19 17 42 42 H 1.08002 * 119.91351 * 0.25746 * 23 22 21 43 43 H 1.07995 * 119.82452 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.05726 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4595 -6.1325 0.0005 13 8 3.6518 -5.9110 0.0019 14 7 2.0102 -7.4033 0.0006 15 6 2.9622 -8.5168 0.0018 16 6 2.1971 -9.8418 0.0010 17 6 3.1914 -11.0047 0.0029 18 1 3.9129 -10.8901 0.8119 19 6 3.9007 -11.0982 -1.3312 20 8 4.6081 -10.2497 -1.8320 21 7 3.5993 -12.2977 -1.8563 22 6 2.7572 -13.0410 -1.0266 23 6 2.2120 -14.3134 -1.1872 24 6 1.3941 -14.8452 -0.2122 25 6 1.1075 -14.1204 0.9325 26 9 0.3061 -14.6461 1.8848 27 6 1.6465 -12.8545 1.0986 28 6 2.4631 -12.3234 0.1256 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.8718 -3.6043 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.8538 -5.0445 -0.8903 35 1 0.8531 -5.0451 0.8896 36 1 1.0565 -7.5804 -0.0001 37 1 3.5881 -8.4587 0.8923 38 1 3.5896 -8.4593 -0.8877 39 1 1.5715 -9.8996 -0.8896 40 1 1.5695 -9.8994 0.8904 41 1 3.9287 -12.6112 -2.7131 42 1 2.4343 -14.8863 -2.0754 43 1 0.9742 -15.8316 -0.3427 44 1 1.4257 -12.2852 1.9893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594421547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:28 Heat of formation + Delta-G solvation = -104.189268 kcal Electronic energy + Delta-G solvation = -26740.731793 eV Core-core repulsion = 22571.725679 eV Total energy + Delta-G solvation = -4169.006114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.36880 -42.23389 -39.41146 -38.89248 -36.11963 -35.86199 -34.12370 -33.57840 -32.00697 -31.08364 -29.49655 -28.26775 -27.01175 -24.15954 -23.38254 -22.77544 -22.42875 -21.13963 -20.49973 -19.64408 -18.63084 -18.10579 -17.24733 -16.93257 -16.56167 -16.18887 -16.04971 -15.98872 -15.76322 -15.55484 -15.08379 -14.71371 -14.39649 -14.17790 -13.98035 -13.74423 -13.54317 -13.39920 -13.25565 -13.03473 -12.80046 -12.22024 -12.11615 -11.89615 -11.75987 -11.41196 -11.26138 -11.19825 -10.74658 -10.57404 -10.51233 -10.49083 -9.75750 -9.62333 -9.62045 -9.21846 -8.98129 -8.94894 -8.57946 -8.28020 -5.93995 -3.95147 0.33764 0.46601 1.86137 2.35729 2.91549 3.00637 3.23249 3.31343 3.39558 3.42578 3.46888 3.58916 3.80548 4.12825 4.31091 4.42711 4.47998 4.52798 4.54168 4.73842 4.83924 5.04327 5.10766 5.23639 5.28951 5.31183 5.41923 5.45278 5.45885 5.67731 5.75993 5.79176 5.87816 5.94684 6.16716 6.28440 6.31492 6.51652 6.78468 6.98870 7.21677 7.40741 7.64901 7.75323 7.88372 8.06967 8.50891 8.53467 9.11746 9.68478 11.17472 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.001657 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.490805 B =16894.059526 C =17698.558456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.138 4.138 12 C 0.511 3.489 13 O -0.535 6.535 14 N -0.741 5.741 15 C 0.110 3.890 16 C -0.107 4.107 17 C -0.077 4.077 18 H 0.134 0.866 19 C 0.530 3.470 20 O -0.479 6.479 21 N -0.660 5.660 22 C 0.138 3.862 23 C -0.111 4.111 24 C -0.115 4.115 25 C 0.078 3.922 26 F -0.135 7.135 27 C -0.095 4.095 28 C -0.109 4.109 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.398 0.602 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.416 0.584 42 H 0.138 0.862 43 H 0.145 0.855 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -37.411 -0.387 37.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.178 4.178 12 C 0.299 3.701 13 O -0.411 6.411 14 N -0.395 5.395 15 C -0.014 4.014 16 C -0.145 4.145 17 C -0.099 4.099 18 H 0.151 0.849 19 C 0.317 3.683 20 O -0.351 6.351 21 N -0.304 5.304 22 C 0.041 3.959 23 C -0.132 4.132 24 C -0.135 4.135 25 C 0.058 3.942 26 F -0.114 7.114 27 C -0.114 4.114 28 C -0.112 4.112 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.255 0.745 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.559 -36.527 -0.572 36.564 hybrid contribution -0.088 0.333 -0.286 0.448 sum 1.471 -36.193 -0.858 36.233 Atomic orbital electron populations 1.69951 1.06021 1.26600 1.51215 1.25022 0.94864 0.99227 0.95425 0.86648 0.79561 0.83065 0.78679 1.20247 1.21356 1.20238 1.21246 0.93176 0.91039 1.50144 0.92619 1.19132 0.93977 0.91469 0.97100 1.21448 0.98642 0.91564 1.01716 1.21838 0.98130 0.94117 1.03693 1.21261 0.90415 0.83660 0.74740 1.90688 1.17363 1.84669 1.48331 1.46079 1.09844 1.05859 1.77752 1.21409 0.92209 0.84033 1.03721 1.21580 0.97016 0.91605 1.04315 1.20685 0.98325 0.93124 0.97779 0.84869 1.20537 0.80252 0.80607 0.86907 1.90896 1.36284 1.41342 1.66564 1.43776 1.47231 1.17079 1.22331 1.18176 0.93622 0.93132 0.90995 1.20204 0.99277 0.93048 1.00665 1.20889 0.99152 1.00940 0.92492 1.17393 0.95435 0.93199 0.88199 1.91535 1.71003 1.86277 1.62547 1.20204 0.97123 0.94227 0.99823 1.19487 1.00917 0.96055 0.94781 0.93053 0.96624 0.96603 0.92698 0.92706 0.89413 0.89383 0.76802 0.91389 0.90027 0.90465 0.89280 0.74547 0.84388 0.83768 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.10 -2.13 4.44 -26.74 -0.12 -2.25 16 11 C -0.14 -2.33 5.70 -27.89 -0.16 -2.49 16 12 C 0.51 8.53 7.83 -10.98 -0.09 8.44 16 13 O -0.54 -11.29 15.98 5.56 0.09 -11.20 16 14 N -0.74 -8.80 5.56 -60.30 -0.33 -9.14 16 15 C 0.11 1.19 5.52 -4.04 -0.02 1.17 16 16 C -0.11 -0.71 4.84 -26.73 -0.13 -0.84 16 17 C -0.08 -0.50 2.99 -92.37 -0.28 -0.77 16 18 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 19 C 0.53 4.55 7.89 -10.83 -0.09 4.47 16 20 O -0.48 -6.11 16.31 5.55 0.09 -6.02 16 21 N -0.66 -3.81 5.89 -9.68 -0.06 -3.87 16 22 C 0.14 0.72 7.11 -83.64 -0.59 0.12 16 23 C -0.11 -0.40 10.07 -39.28 -0.40 -0.80 16 24 C -0.12 -0.46 10.00 -39.60 -0.40 -0.85 16 25 C 0.08 0.43 7.31 -39.36 -0.29 0.14 16 26 F -0.14 -0.92 17.27 2.25 0.04 -0.88 16 27 C -0.09 -0.48 10.02 -39.66 -0.40 -0.87 16 28 C -0.11 -0.60 5.67 -104.37 -0.59 -1.19 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.40 3.42 8.47 -40.82 -0.35 3.07 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.12 6.35 -51.93 -0.33 0.79 16 39 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.42 1.59 8.96 -40.82 -0.37 1.23 16 42 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 43 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 44 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -37.23 379.41 -8.90 -46.14 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.07 Total: -2.05 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -4.09 Total: -9.36 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.34 Total: -39.66 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.18 Total: -17.22 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.23 -8.90 -46.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594421547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.053 kcal (2) G-P(sol) polarization free energy of solvation -37.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds