Wall clock time and date at job start Tue Mar 31 2020 18:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00021 * 2 1 4 4 H 1.48502 * 109.46616 * 239.99494 * 3 2 1 5 5 H 1.48495 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47098 * 119.99973 * 3 2 1 7 7 C 1.37882 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00303 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47377 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47516 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47188 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00288 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00090 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00053 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.46944 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46950 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.55916 * 52.33250 * 17 16 15 19 19 C 1.51385 * 110.50658 * 289.66247 * 17 16 15 20 20 O 1.21293 * 126.43911 * 61.35249 * 19 17 16 21 21 N 1.34365 * 107.12477 * 241.35128 * 19 17 16 22 22 C 1.39651 * 112.22464 * 0.02562 * 21 19 17 23 23 C 1.39350 * 130.79934 * 179.97438 * 22 21 19 24 24 C 1.37935 * 120.16774 * 179.97438 * 23 22 21 25 25 C 1.38489 * 120.34407 * 0.02562 * 24 23 22 26 26 F 1.35108 * 120.11009 * 180.02562 * 25 24 23 27 27 C 1.38580 * 119.77903 * 359.97142 * 25 24 23 28 28 C 1.37684 * 119.89232 * 0.02562 * 27 25 24 29 29 H 0.96998 * 119.99926 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.47343 * 59.99918 * 9 7 2 31 31 H 1.08999 * 109.47635 * 300.00052 * 9 7 2 32 32 H 1.09007 * 109.46527 * 59.99938 * 10 9 7 33 33 H 1.08999 * 109.47204 * 300.00835 * 10 9 7 34 34 H 1.09001 * 109.46986 * 60.00056 * 11 10 9 35 35 H 1.08999 * 109.47527 * 300.00590 * 11 10 9 36 36 H 0.97002 * 119.99639 * 0.02562 * 14 12 11 37 37 H 1.08993 * 109.46996 * 60.00142 * 15 14 12 38 38 H 1.08998 * 109.46773 * 300.00336 * 15 14 12 39 39 H 1.08993 * 109.47535 * 60.00009 * 16 15 14 40 40 H 1.09002 * 109.46790 * 299.99570 * 16 15 14 41 41 H 0.97001 * 123.89091 * 180.02562 * 21 19 17 42 42 H 1.08002 * 119.91351 * 0.25746 * 23 22 21 43 43 H 1.07995 * 119.82452 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.05726 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4595 -6.1325 0.0005 13 8 3.6518 -5.9110 0.0019 14 7 2.0102 -7.4033 0.0006 15 6 2.9622 -8.5168 0.0018 16 6 2.1971 -9.8418 0.0010 17 6 3.1914 -11.0047 0.0029 18 1 3.9129 -10.8901 0.8119 19 6 3.9007 -11.0982 -1.3312 20 8 4.6081 -10.2497 -1.8320 21 7 3.5993 -12.2977 -1.8563 22 6 2.7572 -13.0410 -1.0266 23 6 2.2120 -14.3134 -1.1872 24 6 1.3941 -14.8452 -0.2122 25 6 1.1075 -14.1204 0.9325 26 9 0.3061 -14.6461 1.8848 27 6 1.6465 -12.8545 1.0986 28 6 2.4631 -12.3234 0.1256 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.8718 -3.6043 0.8906 33 1 2.8719 -3.6044 -0.8894 34 1 0.8538 -5.0445 -0.8903 35 1 0.8531 -5.0451 0.8896 36 1 1.0565 -7.5804 -0.0001 37 1 3.5881 -8.4587 0.8923 38 1 3.5896 -8.4593 -0.8877 39 1 1.5715 -9.8996 -0.8896 40 1 1.5695 -9.8994 0.8904 41 1 3.9287 -12.6112 -2.7131 42 1 2.4343 -14.8863 -2.0754 43 1 0.9742 -15.8316 -0.3427 44 1 1.4257 -12.2852 1.9893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594421547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:27 Heat of formation + Delta-G solvation = -129.849181 kcal Electronic energy + Delta-G solvation = -26741.844491 eV Core-core repulsion = 22571.725679 eV Total energy + Delta-G solvation = -4170.118811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.80397 -42.73620 -40.71205 -39.47214 -36.91636 -36.55798 -36.05224 -34.39216 -33.96506 -31.69947 -30.12791 -29.62242 -28.01859 -25.80303 -24.06459 -23.59654 -22.86961 -22.23233 -21.74333 -21.00863 -19.07795 -18.65785 -18.53296 -17.79169 -17.73817 -17.24131 -16.88156 -16.77048 -16.60947 -16.47159 -16.43935 -15.95684 -15.22942 -15.10639 -14.88806 -14.46909 -14.30449 -14.18800 -14.08336 -13.98399 -13.86676 -13.74344 -13.37278 -13.11039 -12.83338 -12.61390 -12.50734 -12.49445 -12.41059 -11.85467 -11.70068 -11.54696 -11.46046 -11.27317 -11.17083 -10.76904 -10.53503 -10.07078 -10.06548 -9.01289 -8.19648 -6.29484 -0.07869 0.14524 1.27457 1.39499 1.42576 1.50691 1.67719 1.89404 2.20642 2.42450 2.56182 2.81511 3.07183 3.12992 3.45802 3.72234 3.80841 3.92217 4.00414 4.04913 4.10708 4.23341 4.25435 4.28677 4.34038 4.57389 4.64126 4.78817 4.83040 4.94038 4.97595 4.99415 5.07286 5.10434 5.12508 5.15558 5.19943 5.45110 5.50322 5.55312 5.70683 5.76428 5.87570 5.88934 6.28489 6.58423 6.85428 6.85687 7.31042 7.38841 8.91566 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.001657 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.490805 B =16894.059526 C =17698.558456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.084 4.084 11 C -0.129 4.129 12 C 0.512 3.488 13 O -0.587 6.587 14 N -0.717 5.717 15 C 0.110 3.890 16 C -0.094 4.094 17 C -0.074 4.074 18 H 0.142 0.858 19 C 0.524 3.476 20 O -0.532 6.532 21 N -0.650 5.650 22 C 0.125 3.875 23 C -0.101 4.101 24 C -0.112 4.112 25 C 0.064 3.936 26 F -0.145 7.145 27 C -0.095 4.095 28 C -0.112 4.112 29 H 0.265 0.735 30 H 0.001 0.999 31 H 0.003 0.997 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.418 0.582 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.424 0.576 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 -39.245 -0.126 39.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.122 4.122 11 C -0.169 4.169 12 C 0.300 3.700 13 O -0.467 6.467 14 N -0.371 5.371 15 C -0.013 4.013 16 C -0.132 4.132 17 C -0.095 4.095 18 H 0.159 0.841 19 C 0.312 3.688 20 O -0.408 6.408 21 N -0.293 5.293 22 C 0.028 3.972 23 C -0.121 4.121 24 C -0.131 4.131 25 C 0.044 3.956 26 F -0.124 7.124 27 C -0.114 4.114 28 C -0.115 4.115 29 H 0.074 0.926 30 H 0.020 0.980 31 H 0.022 0.978 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.256 0.744 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.264 0.736 42 H 0.182 0.818 43 H 0.183 0.817 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.455 -38.450 -0.308 38.454 hybrid contribution 0.183 0.778 -0.372 0.882 sum 0.638 -37.672 -0.681 37.684 Atomic orbital electron populations 1.70054 1.07428 1.27840 1.51471 1.25905 0.95865 1.03028 0.94688 0.85556 0.78395 0.78423 0.79004 1.19581 1.20226 1.19438 1.21668 0.93312 0.92893 1.50877 0.93192 1.19021 0.94183 0.92280 0.95628 1.21173 0.97683 0.93227 1.00155 1.21675 0.97828 0.91458 1.05904 1.21134 0.89376 0.85023 0.74439 1.90675 1.19327 1.85573 1.51166 1.45829 1.11257 1.04601 1.75391 1.21441 0.92293 0.85502 1.02099 1.21507 0.96729 0.89061 1.05904 1.20627 0.98403 0.93663 0.96830 0.84073 1.20878 0.79700 0.80670 0.87585 1.90871 1.38751 1.43162 1.68013 1.43675 1.46701 1.16333 1.22639 1.18371 0.94025 0.93881 0.90875 1.20481 0.98034 0.92304 1.01301 1.21166 0.98561 1.01636 0.91739 1.17632 0.95723 0.93655 0.88592 1.91513 1.71381 1.86430 1.63062 1.20296 0.96746 0.94290 1.00079 1.19361 1.01337 0.95505 0.95257 0.92644 0.98042 0.97819 0.94113 0.94458 0.87382 0.86939 0.74428 0.91882 0.92986 0.89963 0.86479 0.73605 0.81803 0.81728 0.82536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 45.88 29.54 68.60 2.03 47.90 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.55 -32.96 9.11 25.60 0.23 -32.73 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.08 -3.83 4.44 30.59 0.14 -3.69 16 11 C -0.13 -4.26 5.70 29.85 0.17 -4.09 16 12 C 0.51 16.93 7.83 87.66 0.69 17.61 16 13 O -0.59 -25.48 15.98 -3.02 -0.05 -25.53 16 14 N -0.72 -16.07 5.56 -463.07 -2.57 -18.64 16 15 C 0.11 2.34 5.52 86.38 0.48 2.81 16 16 C -0.09 -1.08 4.84 30.60 0.15 -0.94 16 17 C -0.07 -0.86 2.99 -11.93 -0.04 -0.89 16 18 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 19 C 0.52 8.97 7.89 87.94 0.69 9.66 16 20 O -0.53 -14.28 16.31 -3.07 -0.05 -14.33 16 21 N -0.65 -6.86 5.89 -303.15 -1.78 -8.64 16 22 C 0.13 1.05 7.11 38.32 0.27 1.32 16 23 C -0.10 -0.43 10.07 22.47 0.23 -0.21 16 24 C -0.11 -0.57 10.00 22.26 0.22 -0.34 16 25 C 0.06 0.56 7.31 22.41 0.16 0.72 16 26 F -0.15 -1.72 17.27 44.97 0.78 -0.95 16 27 C -0.10 -0.74 10.02 22.22 0.22 -0.52 16 28 C -0.11 -1.00 5.67 -19.70 -0.11 -1.11 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.04 1.93 8.10 -2.38 -0.02 1.91 16 33 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 34 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.11 3.18 8.14 -2.39 -0.02 3.17 16 36 H 0.42 6.04 8.47 -92.71 -0.79 5.26 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.48 6.35 -2.39 -0.02 1.46 16 39 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.42 2.87 8.96 -92.71 -0.83 2.04 16 42 H 0.16 -0.17 8.06 -2.91 -0.02 -0.19 16 43 H 0.17 0.13 8.06 -2.91 -0.02 0.11 16 44 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -83.29 379.41 2.18 -81.11 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -0.57 Total: 5.79 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 4.12 Total: -10.19 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -4.07 Total: -83.81 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -0.10 Total: -39.86 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.78 Total: -0.95 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -83.29 2.18 -81.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594421547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.738 kcal (2) G-P(sol) polarization free energy of solvation -83.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds