Wall clock time and date at job start Tue Mar 31 2020 17:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00254 * 2 1 4 4 H 1.08992 * 109.46839 * 17.13142 * 3 2 1 5 5 C 1.52999 * 109.46703 * 257.12947 * 3 2 1 6 6 S 1.81395 * 109.47161 * 65.54487 * 5 3 2 7 7 O 1.42106 * 110.54286 * 287.77430 * 6 5 3 8 8 O 1.42097 * 110.54507 * 64.52647 * 6 5 3 9 9 N 1.65599 * 104.44840 * 176.15517 * 6 5 3 10 10 C 1.46499 * 120.00168 * 64.99852 * 9 6 5 11 11 C 1.50709 * 109.47128 * 165.00251 * 10 9 6 12 12 O 1.21298 * 119.99713 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00052 * 179.97438 * 11 10 9 14 14 C 1.37092 * 119.99844 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00255 * 0.02562 * 14 13 11 16 16 C 1.38952 * 119.99766 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00011 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99852 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47381 * 90.00226 * 18 16 14 20 20 H 1.48506 * 109.46911 * 209.99743 * 18 16 14 21 21 H 1.48495 * 109.47421 * 329.99740 * 18 16 14 22 22 C 1.53001 * 109.46633 * 137.13083 * 3 2 1 23 23 C 1.54264 * 110.03718 * 57.16900 * 22 3 2 24 24 C 1.54880 * 104.19482 * 217.10004 * 23 22 3 25 25 C 1.54886 * 102.75161 * 37.94160 * 24 23 22 26 26 C 1.53875 * 110.03384 * 299.99640 * 22 3 2 27 27 H 1.08996 * 109.47000 * 56.57591 * 1 2 3 28 28 H 1.08998 * 109.46885 * 296.57806 * 1 2 3 29 29 H 1.08996 * 109.46977 * 176.57567 * 1 2 3 30 30 H 1.08998 * 109.46572 * 185.54197 * 5 3 2 31 31 H 1.08993 * 109.47521 * 305.53685 * 5 3 2 32 32 H 0.97010 * 119.99766 * 244.99501 * 9 6 5 33 33 H 1.09007 * 109.46867 * 284.99647 * 10 9 6 34 34 H 1.08989 * 109.47538 * 45.00149 * 10 9 6 35 35 H 0.97001 * 119.99535 * 0.02562 * 13 11 10 36 36 H 0.97000 * 119.99998 * 179.97438 * 17 16 14 37 37 H 1.09005 * 110.00676 * 178.61132 * 22 3 2 38 38 H 1.09003 * 110.48313 * 335.78271 * 23 22 3 39 39 H 1.09004 * 110.48456 * 98.41970 * 23 22 3 40 40 H 1.08995 * 110.75792 * 279.62594 * 24 23 22 41 41 H 1.09003 * 110.91487 * 156.32953 * 24 23 22 42 42 H 1.08998 * 110.49177 * 203.37922 * 25 24 23 43 43 H 1.09005 * 110.59800 * 80.78560 * 25 24 23 44 44 H 1.08997 * 110.03171 * 238.57697 * 26 22 3 45 45 H 1.08994 * 110.03149 * 0.02562 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2610 2.0368 0.3027 5 6 2.5112 1.6406 -1.4063 6 16 1.0993 1.7592 -2.5389 7 8 0.5613 0.4705 -2.8018 8 8 0.2572 2.8441 -2.1741 9 7 1.7649 2.2258 -3.9816 10 6 2.6871 1.3318 -4.6861 11 6 2.8583 1.8046 -6.1068 12 8 2.2675 2.7911 -6.4929 13 7 3.6677 1.1313 -6.9482 14 6 3.8229 1.5612 -8.2407 15 1 3.2969 2.4395 -8.5846 16 6 4.6570 0.8667 -9.1084 17 7 5.2973 -0.2018 -8.6899 18 14 4.8690 1.4528 -10.8693 19 1 6.0037 2.4083 -10.9398 20 1 5.1470 0.2886 -11.7484 21 1 3.6252 2.1273 -11.3198 22 6 3.1835 1.3412 0.9814 23 6 4.2197 0.2617 0.6061 24 6 4.7316 -0.2639 1.9700 25 6 3.4493 -0.2660 2.8387 26 6 2.6937 1.0057 2.4010 27 1 -0.3633 0.5661 -0.8577 28 1 -0.3633 0.4598 0.9191 29 1 -0.3633 -1.0258 -0.0614 30 1 3.0415 2.5927 -1.3857 31 1 3.1863 0.8561 -1.7481 32 1 1.5441 3.0912 -4.3603 33 1 3.6539 1.3369 -4.1825 34 1 2.2830 0.3196 -4.6863 35 1 4.1398 0.3422 -6.6394 36 1 5.8793 -0.6868 -9.2957 37 1 3.6492 2.3267 0.9703 38 1 3.7463 -0.5413 0.0410 39 1 5.0378 0.7005 0.0348 40 1 5.4798 0.4099 2.3875 41 1 5.1337 -1.2723 1.8724 42 1 3.7052 -0.2124 3.8969 43 1 2.8505 -1.1541 2.6364 44 1 2.9225 1.8279 3.0790 45 1 1.6203 0.8170 2.3907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594779162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:20 Heat of formation + Delta-G solvation = -167.421711 kcal Electronic energy + Delta-G solvation = -27650.767119 eV Core-core repulsion = 23602.090203 eV Total energy + Delta-G solvation = -4048.676916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.74027 -38.45600 -37.16444 -37.00711 -35.92037 -34.68497 -33.73823 -32.57020 -31.37092 -29.06786 -28.23761 -27.19578 -26.85482 -24.35179 -23.27812 -20.91091 -20.00196 -19.68257 -19.28654 -18.17033 -17.79663 -17.04588 -16.71654 -16.48928 -15.97039 -15.59962 -15.33529 -15.06134 -14.82904 -14.61904 -14.44014 -14.27516 -13.69772 -13.52092 -13.47641 -13.24852 -12.68574 -12.50901 -12.33340 -12.07564 -11.98708 -11.94885 -11.75128 -11.60034 -11.54143 -11.34356 -11.25001 -11.14200 -11.04169 -10.80394 -10.78008 -10.64682 -10.46002 -10.31380 -9.95481 -9.64273 -9.34048 -8.61850 -8.10581 -6.52288 -3.93956 0.22459 2.73267 3.11347 3.22021 3.27835 3.30478 3.66591 3.74017 4.08820 4.10057 4.19750 4.30901 4.42227 4.50163 4.61530 4.78470 4.88800 5.01397 5.05775 5.12481 5.14564 5.22098 5.29752 5.33982 5.39198 5.43829 5.48927 5.53559 5.61337 5.66091 5.70347 5.72242 5.82211 5.86473 5.99566 6.06886 6.20738 6.25425 6.78431 7.23531 7.45900 7.92791 8.45400 9.04849 9.38508 9.87265 10.64727 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.002695 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.981465 B =10385.731483 C =11364.527584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.368 6.368 3 C 0.106 3.894 4 H 0.078 0.922 5 C -0.657 4.657 6 S 2.609 3.391 7 O -0.946 6.946 8 O -0.963 6.963 9 N -1.100 6.100 10 C 0.103 3.897 11 C 0.434 3.566 12 O -0.589 6.589 13 N -0.552 5.552 14 C -0.304 4.304 15 H 0.105 0.895 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.269 1.269 22 C -0.086 4.086 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.118 4.118 27 H 0.038 0.962 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.426 0.574 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.395 0.605 36 H 0.274 0.726 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -0.656 22.963 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.286 6.286 3 C 0.046 3.954 4 H 0.096 0.904 5 C -0.786 4.786 6 S 2.700 3.300 7 O -0.935 6.935 8 O -0.953 6.953 9 N -0.863 5.863 10 C -0.027 4.027 11 C 0.218 3.782 12 O -0.475 6.475 13 N -0.188 5.188 14 C -0.434 4.434 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.759 3.241 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.105 4.105 23 C -0.157 4.157 24 C -0.162 4.162 25 C -0.158 4.158 26 C -0.156 4.156 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.162 0.838 31 H 0.164 0.836 32 H 0.265 0.735 33 H 0.097 0.903 34 H 0.114 0.886 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.678 -0.633 22.793 22.958 hybrid contribution 0.984 0.410 -0.879 1.382 sum -1.694 -0.224 21.914 21.980 Atomic orbital electron populations 1.23132 0.80571 1.04470 0.99790 1.88030 1.19748 1.26178 1.94682 1.21792 0.96401 0.86004 0.91210 0.90430 1.31209 1.22834 1.12156 1.12360 1.05010 0.76006 0.74521 0.74448 1.93623 1.75403 1.41658 1.82851 1.93602 1.63478 1.54806 1.83429 1.55159 1.62848 1.30628 1.37706 1.20978 0.93215 0.94205 0.94337 1.19603 0.84916 0.86958 0.86690 1.90512 1.51189 1.28564 1.77206 1.41814 1.39632 1.26527 1.10791 1.19734 1.25759 1.12029 0.85847 0.87692 1.25308 0.96124 0.95651 1.00626 1.69604 1.29172 1.17663 1.37204 0.85818 0.78945 0.78099 0.81203 1.20299 1.20798 1.19320 1.21957 0.94401 1.00380 0.93796 1.22403 0.97441 0.98397 0.97488 1.22471 0.97183 1.00984 0.95563 1.22308 0.96530 0.98101 0.98891 1.22141 1.00453 0.97938 0.95033 0.94304 0.93421 0.88168 0.83760 0.83620 0.73524 0.90321 0.88606 0.77104 0.91617 0.89581 0.90031 0.91620 0.91815 0.91584 0.92122 0.91314 0.91846 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.06 101.05 1.02 1.19 16 2 O -0.37 -4.05 8.51 -35.23 -0.30 -4.35 16 3 C 0.11 1.03 1.78 -26.73 -0.05 0.98 16 4 H 0.08 0.68 7.68 -51.93 -0.40 0.29 16 5 C -0.66 -6.46 5.46 37.16 0.20 -6.25 16 6 S 2.61 36.28 4.10 -107.50 -0.44 35.84 16 7 O -0.95 -15.55 15.26 -58.10 -0.89 -16.44 16 8 O -0.96 -15.47 18.08 -57.54 -1.04 -16.51 16 9 N -1.10 -17.33 5.82 -11.65 -0.07 -17.40 16 10 C 0.10 1.71 6.61 -5.19 -0.03 1.68 16 11 C 0.43 9.84 7.85 -10.98 -0.09 9.75 16 12 O -0.59 -15.36 15.30 5.54 0.08 -15.27 16 13 N -0.55 -13.43 5.29 -10.96 -0.06 -13.49 16 14 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 15 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 16 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 17 N -0.90 -23.56 13.05 55.50 0.72 -22.83 16 18 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 C -0.09 -0.70 2.83 -89.50 -0.25 -0.95 16 23 C -0.12 -1.01 5.32 -25.08 -0.13 -1.15 16 24 C -0.12 -0.94 6.91 -24.74 -0.17 -1.11 16 25 C -0.12 -0.89 6.83 -25.07 -0.17 -1.06 16 26 C -0.12 -0.89 6.22 -25.61 -0.16 -1.05 16 27 H 0.04 0.46 5.19 -51.93 -0.27 0.19 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.14 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.15 1.29 7.46 -51.93 -0.39 0.90 16 32 H 0.43 7.19 7.67 -34.47 -0.26 6.92 16 33 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.10 1.50 7.69 -51.94 -0.40 1.10 16 35 H 0.40 9.04 7.90 -40.82 -0.32 8.72 16 36 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.79 7.03 -51.93 -0.37 0.43 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.51 7.42 -51.93 -0.39 0.12 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -33.69 374.40 -8.40 -42.09 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.95 Total: 13.04 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.08 Total: -5.77 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.60 Total: -53.72 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -2.14 Total: -52.57 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 36.28 SS G_CDS: -0.44 Total: 35.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.69 -8.40 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594779162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.332 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds