Wall clock time and date at job start Tue Mar 31 2020 17:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 114.00254 * 2 1 4 4 H 1.08992 * 109.46839 * 17.13142 * 3 2 1 5 5 C 1.52999 * 109.46703 * 257.12947 * 3 2 1 6 6 S 1.81395 * 109.47161 * 65.54487 * 5 3 2 7 7 O 1.42106 * 110.54286 * 287.77430 * 6 5 3 8 8 O 1.42097 * 110.54507 * 64.52647 * 6 5 3 9 9 N 1.65599 * 104.44840 * 176.15517 * 6 5 3 10 10 C 1.46499 * 120.00168 * 64.99852 * 9 6 5 11 11 C 1.50709 * 109.47128 * 165.00251 * 10 9 6 12 12 O 1.21298 * 119.99713 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00052 * 179.97438 * 11 10 9 14 14 C 1.37092 * 119.99844 * 179.97438 * 13 11 10 15 15 H 1.08002 * 120.00255 * 0.02562 * 14 13 11 16 16 C 1.38952 * 119.99766 * 180.02562 * 14 13 11 17 17 N 1.31408 * 120.00011 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99852 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47381 * 90.00226 * 18 16 14 20 20 H 1.48506 * 109.46911 * 209.99743 * 18 16 14 21 21 H 1.48495 * 109.47421 * 329.99740 * 18 16 14 22 22 C 1.53001 * 109.46633 * 137.13083 * 3 2 1 23 23 C 1.54264 * 110.03718 * 57.16900 * 22 3 2 24 24 C 1.54880 * 104.19482 * 217.10004 * 23 22 3 25 25 C 1.54886 * 102.75161 * 37.94160 * 24 23 22 26 26 C 1.53875 * 110.03384 * 299.99640 * 22 3 2 27 27 H 1.08996 * 109.47000 * 56.57591 * 1 2 3 28 28 H 1.08998 * 109.46885 * 296.57806 * 1 2 3 29 29 H 1.08996 * 109.46977 * 176.57567 * 1 2 3 30 30 H 1.08998 * 109.46572 * 185.54197 * 5 3 2 31 31 H 1.08993 * 109.47521 * 305.53685 * 5 3 2 32 32 H 0.97010 * 119.99766 * 244.99501 * 9 6 5 33 33 H 1.09007 * 109.46867 * 284.99647 * 10 9 6 34 34 H 1.08989 * 109.47538 * 45.00149 * 10 9 6 35 35 H 0.97001 * 119.99535 * 0.02562 * 13 11 10 36 36 H 0.97000 * 119.99998 * 179.97438 * 17 16 14 37 37 H 1.09005 * 110.00676 * 178.61132 * 22 3 2 38 38 H 1.09003 * 110.48313 * 335.78271 * 23 22 3 39 39 H 1.09004 * 110.48456 * 98.41970 * 23 22 3 40 40 H 1.08995 * 110.75792 * 279.62594 * 24 23 22 41 41 H 1.09003 * 110.91487 * 156.32953 * 24 23 22 42 42 H 1.08998 * 110.49177 * 203.37922 * 25 24 23 43 43 H 1.09005 * 110.59800 * 80.78560 * 25 24 23 44 44 H 1.08997 * 110.03171 * 238.57697 * 26 22 3 45 45 H 1.08994 * 110.03149 * 0.02562 * 26 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.2610 2.0368 0.3027 5 6 2.5112 1.6406 -1.4063 6 16 1.0993 1.7592 -2.5389 7 8 0.5613 0.4705 -2.8018 8 8 0.2572 2.8441 -2.1741 9 7 1.7649 2.2258 -3.9816 10 6 2.6871 1.3318 -4.6861 11 6 2.8583 1.8046 -6.1068 12 8 2.2675 2.7911 -6.4929 13 7 3.6677 1.1313 -6.9482 14 6 3.8229 1.5612 -8.2407 15 1 3.2969 2.4395 -8.5846 16 6 4.6570 0.8667 -9.1084 17 7 5.2973 -0.2018 -8.6899 18 14 4.8690 1.4528 -10.8693 19 1 6.0037 2.4083 -10.9398 20 1 5.1470 0.2886 -11.7484 21 1 3.6252 2.1273 -11.3198 22 6 3.1835 1.3412 0.9814 23 6 4.2197 0.2617 0.6061 24 6 4.7316 -0.2639 1.9700 25 6 3.4493 -0.2660 2.8387 26 6 2.6937 1.0057 2.4010 27 1 -0.3633 0.5661 -0.8577 28 1 -0.3633 0.4598 0.9191 29 1 -0.3633 -1.0258 -0.0614 30 1 3.0415 2.5927 -1.3857 31 1 3.1863 0.8561 -1.7481 32 1 1.5441 3.0912 -4.3603 33 1 3.6539 1.3369 -4.1825 34 1 2.2830 0.3196 -4.6863 35 1 4.1398 0.3422 -6.6394 36 1 5.8793 -0.6868 -9.2957 37 1 3.6492 2.3267 0.9703 38 1 3.7463 -0.5413 0.0410 39 1 5.0378 0.7005 0.0348 40 1 5.4798 0.4099 2.3875 41 1 5.1337 -1.2723 1.8724 42 1 3.7052 -0.2124 3.8969 43 1 2.8505 -1.1541 2.6364 44 1 2.9225 1.8279 3.0790 45 1 1.6203 0.8170 2.3907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594779162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:19 Heat of formation + Delta-G solvation = -193.777593 kcal Electronic energy + Delta-G solvation = -27651.909996 eV Core-core repulsion = 23602.090203 eV Total energy + Delta-G solvation = -4049.819793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43450 -40.26596 -38.26280 -37.77828 -37.08044 -36.33216 -35.39239 -33.33346 -33.32300 -29.64908 -28.91839 -28.76649 -27.63629 -26.16412 -24.01366 -21.50116 -21.42409 -20.64280 -20.40496 -20.06859 -19.02018 -17.89804 -17.77250 -17.47529 -17.28398 -16.84129 -16.51062 -16.15921 -16.03348 -15.90115 -15.82310 -15.34875 -15.15610 -14.29336 -14.17906 -14.07866 -13.97849 -13.88888 -13.58769 -13.39687 -13.26316 -13.17989 -13.03393 -12.91904 -12.57404 -12.44197 -12.32287 -12.12975 -11.90705 -11.82525 -11.72874 -11.55960 -11.48520 -11.37280 -11.33928 -10.82441 -10.59196 -10.36943 -10.06675 -8.49803 -5.99076 -0.84385 1.36905 1.42964 1.54213 1.60567 1.94689 2.28890 2.55863 2.67647 3.06172 3.17533 3.24383 3.33841 3.65108 3.73506 3.91450 3.95840 3.96796 4.14582 4.26866 4.36235 4.39062 4.42877 4.44456 4.63874 4.68119 4.72811 4.75561 4.79873 4.83848 4.94470 4.95853 5.08984 5.15533 5.31959 5.39664 5.41176 5.51368 5.61514 5.86693 5.98957 6.03045 6.52562 7.07000 7.47653 8.00761 8.66971 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.002695 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.981465 B =10385.731483 C =11364.527584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.379 6.379 3 C 0.094 3.906 4 H 0.086 0.914 5 C -0.632 4.632 6 S 2.607 3.393 7 O -0.979 6.979 8 O -0.990 6.990 9 N -1.109 6.109 10 C 0.110 3.890 11 C 0.432 3.568 12 O -0.628 6.628 13 N -0.561 5.561 14 C -0.338 4.338 15 H 0.081 0.919 16 C -0.008 4.008 17 N -0.914 5.914 18 Si 0.993 3.007 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.275 1.275 22 C -0.084 4.084 23 C -0.124 4.124 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.120 4.120 27 H 0.019 0.981 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.178 0.822 31 H 0.163 0.837 32 H 0.420 0.580 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.401 0.599 36 H 0.280 0.720 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -0.594 24.473 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.297 6.297 3 C 0.035 3.965 4 H 0.104 0.896 5 C -0.765 4.765 6 S 2.704 3.296 7 O -0.969 6.969 8 O -0.981 6.981 9 N -0.870 5.870 10 C -0.020 4.020 11 C 0.218 3.782 12 O -0.516 6.516 13 N -0.198 5.198 14 C -0.468 4.468 15 H 0.099 0.901 16 C -0.209 4.209 17 N -0.554 5.554 18 Si 0.816 3.184 19 H -0.194 1.194 20 H -0.196 1.196 21 H -0.200 1.200 22 C -0.103 4.103 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.159 4.159 26 C -0.157 4.157 27 H 0.037 0.963 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.196 0.804 31 H 0.181 0.819 32 H 0.257 0.743 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.236 0.764 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.172 -0.595 24.286 24.322 hybrid contribution 0.489 0.378 -1.230 1.376 sum -0.682 -0.217 23.057 23.068 Atomic orbital electron populations 1.23251 0.80547 1.04873 1.00072 1.88023 1.19926 1.27080 1.94719 1.22079 0.97420 0.85810 0.91230 0.89595 1.31054 1.20126 1.14748 1.10595 1.04937 0.76955 0.73249 0.74412 1.93578 1.77146 1.42600 1.83550 1.93561 1.65423 1.55514 1.83575 1.55229 1.63000 1.30004 1.38765 1.21031 0.95887 0.94445 0.90644 1.20623 0.83056 0.85841 0.88696 1.90486 1.52211 1.30231 1.78648 1.41856 1.40477 1.27030 1.10431 1.19684 1.27083 1.12312 0.87675 0.90101 1.26038 0.95331 0.95571 1.03953 1.69654 1.29223 1.18038 1.38464 0.84932 0.78643 0.78005 0.76791 1.19397 1.19577 1.19956 1.22019 0.93549 1.01288 0.93471 1.22432 0.97723 0.98127 0.97883 1.22481 0.97379 1.01126 0.95188 1.22312 0.96381 0.97711 0.99530 1.22173 1.00207 0.98372 0.94976 0.96265 0.91106 0.87618 0.80437 0.81941 0.74343 0.85617 0.87501 0.76414 0.91068 0.87668 0.91612 0.90715 0.90858 0.91787 0.91146 0.92410 0.90487 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 10.06 113.37 1.14 1.31 16 2 O -0.38 -7.76 8.51 -148.98 -1.27 -9.02 16 3 C 0.09 1.59 1.78 30.59 0.05 1.65 16 4 H 0.09 1.31 7.68 -2.39 -0.02 1.30 16 5 C -0.63 -10.52 5.46 71.98 0.39 -10.13 16 6 S 2.61 70.13 4.10 -56.49 -0.23 69.90 16 7 O -0.98 -32.08 15.26 -127.11 -1.94 -34.02 16 8 O -0.99 -31.60 18.08 -127.65 -2.31 -33.90 16 9 N -1.11 -34.08 5.82 -190.78 -1.11 -35.19 16 10 C 0.11 3.49 6.61 85.64 0.57 4.06 16 11 C 0.43 19.62 7.85 87.66 0.69 20.31 16 12 O -0.63 -33.48 15.30 -3.08 -0.05 -33.52 16 13 N -0.56 -27.53 5.29 -306.97 -1.62 -29.15 16 14 C -0.34 -18.58 9.68 84.04 0.81 -17.77 16 15 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 16 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 17 N -0.91 -47.52 13.05 21.66 0.28 -47.23 16 18 Si 0.99 41.73 29.55 68.60 2.03 43.76 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 C -0.08 -1.10 2.83 -10.07 -0.03 -1.13 16 23 C -0.12 -1.75 5.32 31.67 0.17 -1.58 16 24 C -0.12 -1.57 6.91 31.88 0.22 -1.35 16 25 C -0.12 -1.55 6.83 31.67 0.22 -1.33 16 26 C -0.12 -1.48 6.22 31.32 0.19 -1.28 16 27 H 0.02 0.45 5.19 -2.39 -0.01 0.44 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.18 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.16 2.28 7.46 -2.39 -0.02 2.26 16 32 H 0.42 14.23 7.67 -96.74 -0.74 13.49 16 33 H 0.13 2.83 8.14 -2.38 -0.02 2.81 16 34 H 0.11 3.20 7.69 -2.39 -0.02 3.18 16 35 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 36 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 37 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.07 1.15 7.03 -2.39 -0.02 1.13 16 39 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.82 7.42 -2.39 -0.02 0.80 16 Total: -1.00 -74.14 374.40 -1.78 -75.92 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -0.46 Total: 39.67 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 4.90 Total: -7.20 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -2.45 Total: -111.57 kcal Atomic # 8 Polarization: -104.91 SS G_CDS: -5.56 Total: -110.47 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 70.13 SS G_CDS: -0.23 Total: 69.90 kcal Total: -74.14 -1.78 -75.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594779162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.861 kcal (2) G-P(sol) polarization free energy of solvation -74.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds