Wall clock time and date at job start Tue Mar 31 2020 17:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35542 * 117.00220 * 2 1 4 4 C 1.39027 * 120.47613 * 180.27792 * 3 2 1 5 5 C 1.39139 * 118.28250 * 180.24429 * 4 3 2 6 6 N 1.38977 * 120.48876 * 179.75781 * 5 4 3 7 7 C 1.34784 * 120.00007 * 185.27756 * 6 5 4 8 8 O 1.21344 * 119.99681 * 355.39232 * 7 6 5 9 9 C 1.49378 * 119.99921 * 175.39704 * 7 6 5 10 10 O 1.21350 * 120.00341 * 353.60567 * 9 7 6 11 11 N 1.34777 * 119.99707 * 173.61143 * 9 7 6 12 12 C 1.46929 * 120.63103 * 351.03726 * 11 9 7 13 13 C 1.52763 * 109.00661 * 233.58538 * 12 11 9 14 14 C 1.53040 * 109.38259 * 305.58661 * 13 12 11 15 15 C 1.53045 * 109.53766 * 61.24472 * 14 13 12 16 16 H 1.08996 * 109.49783 * 58.58135 * 15 14 13 17 17 C 1.50699 * 109.52217 * 178.66801 * 15 14 13 18 18 H 1.07994 * 120.00409 * 34.39763 * 17 15 14 19 19 C 1.37878 * 119.99777 * 214.39503 * 17 15 14 20 20 N 1.31517 * 120.00135 * 184.14585 * 19 17 15 21 21 Si 1.86801 * 119.99866 * 4.14422 * 19 17 15 22 22 H 1.48501 * 109.47216 * 93.96634 * 21 19 17 23 23 H 1.48506 * 109.46860 * 213.96246 * 21 19 17 24 24 H 1.48493 * 109.47484 * 333.96367 * 21 19 17 25 25 C 1.46928 * 120.62997 * 171.31866 * 11 9 7 26 26 N 1.33103 * 119.02068 * 359.48270 * 5 4 3 27 27 C 1.31714 * 120.84837 * 0.27691 * 26 5 4 28 28 N 1.31782 * 121.89292 * 359.97438 * 27 26 5 29 29 H 1.08999 * 109.47433 * 59.99771 * 1 2 3 30 30 H 1.09006 * 109.46804 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46919 * 299.99711 * 1 2 3 32 32 H 1.07997 * 120.85804 * 0.02562 * 4 3 2 33 33 H 0.96999 * 120.00470 * 5.56165 * 6 5 4 34 34 H 1.08997 * 109.58689 * 353.41801 * 12 11 9 35 35 H 1.08998 * 109.58594 * 113.84911 * 12 11 9 36 36 H 1.08993 * 109.56145 * 185.55250 * 13 12 11 37 37 H 1.08999 * 109.36065 * 65.49505 * 13 12 11 38 38 H 1.08997 * 109.46205 * 301.22083 * 14 13 12 39 39 H 1.09004 * 109.44572 * 181.25257 * 14 13 12 40 40 H 0.96994 * 119.99900 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.58502 * 246.15403 * 25 11 9 42 42 H 1.09002 * 109.58514 * 6.43333 * 25 11 9 43 43 H 1.07992 * 119.04738 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4321 1.2919 -0.0058 5 6 4.0159 2.5549 -0.0003 6 7 5.3989 2.6924 -0.0007 7 6 5.9545 3.9152 0.1120 8 8 5.2495 4.9027 0.1296 9 6 7.4382 4.0547 0.2151 10 8 8.1352 3.0663 0.3144 11 7 8.0027 5.2784 0.1980 12 6 7.2005 6.4686 -0.1164 13 6 7.8720 7.2347 -1.2548 14 6 9.3239 7.5367 -0.8767 15 6 10.0809 6.2238 -0.6632 16 1 10.0385 5.6271 -1.5744 17 6 11.5186 6.5211 -0.3230 18 1 11.7658 7.3959 0.2600 19 6 12.5184 5.6761 -0.7559 20 7 13.7637 5.8897 -0.3911 21 14 12.1040 4.2278 -1.8606 22 1 12.2795 4.6228 -3.2813 23 1 13.0078 3.0919 -1.5473 24 1 10.6954 3.8175 -1.6313 25 6 9.4333 5.4470 0.4874 26 7 3.2304 3.6294 -0.0003 27 6 1.9189 3.5072 0.0001 28 7 1.3294 2.3286 0.0000 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 4.0411 0.4001 -0.0108 33 1 5.9642 1.9089 -0.0862 34 1 6.1999 6.1642 -0.4230 35 1 7.1366 7.1089 0.7633 36 1 7.3395 8.1695 -1.4295 37 1 7.8505 6.6284 -2.1603 38 1 9.3456 8.1220 0.0425 39 1 9.7976 8.1027 -1.6789 40 1 14.4671 5.2954 -0.6960 41 1 9.5550 6.0023 1.4174 42 1 9.9048 4.4687 0.5816 43 1 1.3093 4.3986 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595086430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:14 Heat of formation + Delta-G solvation = -47.183591 kcal Electronic energy + Delta-G solvation = -28559.398593 eV Core-core repulsion = 24412.784393 eV Total energy + Delta-G solvation = -4146.614201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.72602 -41.87020 -40.23636 -39.30845 -38.70001 -36.79563 -35.17791 -33.62634 -33.51219 -32.44916 -32.21982 -28.63201 -27.83500 -26.96913 -25.61389 -25.49154 -23.51413 -23.43076 -21.84529 -20.79331 -20.08372 -19.28042 -18.98979 -18.47068 -17.88128 -17.46658 -17.11269 -17.02876 -16.54137 -16.51834 -16.32468 -15.83125 -15.69982 -15.51283 -15.15063 -15.00704 -14.95035 -14.86356 -14.41797 -14.14548 -13.79072 -13.25451 -13.03378 -12.94267 -12.93193 -12.70131 -12.42174 -12.35147 -11.98508 -11.82606 -11.73400 -11.65039 -11.35906 -11.06207 -10.78950 -10.71475 -10.55851 -10.10114 -9.96823 -9.73961 -8.33341 -6.36950 -0.43351 0.00253 0.44087 0.85011 1.29407 1.35677 1.45921 1.85712 1.94057 2.20086 2.30986 2.73297 2.88924 3.04241 3.04854 3.34069 3.76201 3.98768 4.02936 4.14331 4.19037 4.32424 4.43244 4.43915 4.45395 4.53592 4.64671 4.70041 4.75499 4.82140 4.91954 5.00241 5.05358 5.19507 5.22175 5.32023 5.43413 5.56480 5.61290 5.66006 5.85550 6.05664 6.19197 6.28837 6.46491 6.69794 6.75255 7.05135 7.29955 8.82650 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023553 B = 0.002619 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.530207 B =10689.911005 C =11522.026903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.307 6.307 3 C 0.375 3.625 4 C -0.274 4.274 5 C 0.418 3.582 6 N -0.622 5.622 7 C 0.517 3.483 8 O -0.442 6.442 9 C 0.497 3.503 10 O -0.552 6.552 11 N -0.572 5.572 12 C 0.073 3.927 13 C -0.128 4.128 14 C -0.104 4.104 15 C 0.003 3.997 16 H 0.029 0.971 17 C -0.509 4.509 18 H 0.043 0.957 19 C 0.020 3.980 20 N -0.941 5.941 21 Si 0.932 3.068 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.253 1.253 25 C 0.119 3.881 26 N -0.560 5.560 27 C 0.364 3.636 28 N -0.596 5.596 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.177 0.823 33 H 0.442 0.558 34 H 0.137 0.863 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.266 0.734 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.315 -9.097 -0.588 30.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.190 3.810 4 C -0.301 4.301 5 C 0.182 3.818 6 N -0.272 5.272 7 C 0.298 3.702 8 O -0.310 6.310 9 C 0.279 3.721 10 O -0.431 6.431 11 N -0.304 5.304 12 C -0.047 4.047 13 C -0.166 4.166 14 C -0.141 4.141 15 C -0.017 4.017 16 H 0.047 0.953 17 C -0.548 4.548 18 H 0.061 0.939 19 C -0.178 4.178 20 N -0.580 5.580 21 Si 0.757 3.243 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.177 1.177 25 C -0.002 4.002 26 N -0.285 5.285 27 C 0.075 3.925 28 N -0.329 5.329 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.194 0.806 33 H 0.284 0.716 34 H 0.154 0.846 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -29.609 -8.441 -0.508 30.793 hybrid contribution 1.450 -1.565 -0.309 2.156 sum -28.160 -10.006 -0.817 29.896 Atomic orbital electron populations 1.23223 0.74718 1.05243 1.02933 1.86236 1.25200 1.23262 1.86408 1.19852 0.88948 0.85530 0.86707 1.21233 0.93845 0.98563 1.16425 1.18362 0.84404 0.89582 0.89470 1.43115 1.04157 1.10932 1.68947 1.20238 0.88574 0.83843 0.77569 1.90609 1.62557 1.35390 1.42487 1.20084 0.88328 0.84269 0.79408 1.90752 1.63949 1.37593 1.50799 1.48429 1.10990 1.06763 1.64182 1.22857 0.97000 0.85539 0.99285 1.21901 0.95836 1.01214 0.97657 1.21514 0.94492 0.97007 1.01124 1.19485 0.93599 0.94695 0.93885 0.95292 1.21149 0.90380 1.09537 1.33712 0.93851 1.25842 0.94816 0.99906 0.97237 1.70028 1.01270 1.40175 1.46566 0.85943 0.79006 0.79538 0.79785 1.19339 1.21459 1.17725 1.22208 0.77200 1.00813 1.00002 1.68456 1.07177 1.31754 1.21099 1.25276 0.86822 0.94729 0.85632 1.68217 1.41624 0.99268 1.23811 0.91794 0.85564 0.91838 0.80587 0.71645 0.84565 0.90083 0.87940 0.92608 0.92391 0.92596 0.92454 0.91005 0.92132 0.74961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.41 113.37 1.18 1.48 16 2 O -0.31 -4.76 10.49 -88.47 -0.93 -5.69 16 3 C 0.38 6.75 7.52 84.71 0.64 7.39 16 4 C -0.27 -4.77 9.99 22.68 0.23 -4.55 16 5 C 0.42 8.95 7.44 132.86 0.99 9.93 16 6 N -0.62 -13.79 5.36 -309.46 -1.66 -15.45 16 7 C 0.52 14.26 7.70 87.25 0.67 14.93 16 8 O -0.44 -12.71 11.49 -3.23 -0.04 -12.74 16 9 C 0.50 16.72 7.73 87.25 0.67 17.40 16 10 O -0.55 -21.22 15.94 -3.25 -0.05 -21.27 16 11 N -0.57 -19.93 2.98 -821.39 -2.45 -22.38 16 12 C 0.07 2.09 5.95 86.22 0.51 2.60 16 13 C -0.13 -3.63 6.06 30.53 0.19 -3.45 16 14 C -0.10 -3.77 5.15 30.62 0.16 -3.61 16 15 C 0.00 0.13 1.85 -11.46 -0.02 0.11 16 16 H 0.03 1.35 5.15 -2.39 -0.01 1.34 16 17 C -0.51 -27.98 8.87 25.60 0.23 -27.75 16 18 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 19 C 0.02 1.17 5.47 84.65 0.46 1.63 16 20 N -0.94 -57.92 13.96 21.45 0.30 -57.62 16 21 Si 0.93 45.20 27.23 68.60 1.87 47.07 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.25 -12.04 6.44 99.48 0.64 -11.40 16 25 C 0.12 4.98 5.71 86.36 0.49 5.48 16 26 N -0.56 -12.72 8.04 -197.62 -1.59 -14.31 16 27 C 0.36 6.32 12.28 180.91 2.22 8.54 16 28 N -0.60 -10.58 9.38 -313.03 -2.94 -13.51 16 29 H 0.06 0.59 8.12 -2.39 -0.02 0.57 16 30 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.59 8.12 -2.38 -0.02 0.57 16 32 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.44 8.07 8.23 -92.71 -0.76 7.31 16 34 H 0.14 3.70 4.33 -47.00 -0.20 3.49 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.06 2.81 6.98 -2.39 -0.02 2.80 16 43 H 0.23 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -72.13 358.07 1.18 -70.95 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.04 Total: 14.83 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 8.62 Total: 30.14 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -8.33 Total: -123.28 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.02 Total: -39.71 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.87 Total: 47.07 kcal Total: -72.13 1.18 -70.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595086430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.766 kcal (2) G-P(sol) polarization free energy of solvation -72.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds