Wall clock time and date at job start Tue Mar 31 2020 18:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48504 * 109.47162 * 270.00053 * 3 2 1 5 5 H 1.48501 * 109.47004 * 30.00146 * 3 2 1 6 6 H 1.48506 * 109.46861 * 150.00046 * 3 2 1 7 7 C 1.37881 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99480 * 173.55167 * 7 2 1 9 9 C 1.50699 * 120.00110 * 353.55525 * 7 2 1 10 10 C 1.52998 * 115.54982 * 85.40815 * 9 7 2 11 11 N 1.46499 * 109.47398 * 65.13976 * 10 9 7 12 12 C 1.34774 * 120.00099 * 178.28858 * 11 10 9 13 13 O 1.21587 * 120.00049 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00105 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99965 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.69421 * 34.43610 * 15 14 12 17 17 C 1.53404 * 109.69976 * 273.83507 * 15 14 12 18 18 O 1.42827 * 108.39074 * 175.59066 * 17 15 14 19 19 C 1.35841 * 117.87342 * 49.12589 * 18 17 15 20 20 C 1.39114 * 118.48193 * 162.87277 * 19 18 17 21 21 C 1.38184 * 120.19870 * 179.78601 * 20 19 18 22 22 F 1.35100 * 120.04348 * 179.97438 * 21 20 19 23 23 C 1.38519 * 119.90879 * 359.97438 * 21 20 19 24 24 C 1.38058 * 119.95429 * 0.08910 * 23 21 20 25 25 C 1.38402 * 121.80553 * 342.81159 * 19 18 17 26 26 C 1.50775 * 121.39204 * 0.54156 * 25 19 18 27 27 C 1.53001 * 117.49472 * 231.07400 * 9 7 2 28 28 C 1.52998 * 117.49796 * 299.73195 * 9 7 2 29 29 H 0.97000 * 119.99601 * 5.07469 * 1 2 3 30 30 H 1.08999 * 109.47097 * 305.13623 * 10 9 7 31 31 H 1.09007 * 109.46663 * 185.14131 * 10 9 7 32 32 H 0.97001 * 119.99983 * 358.29046 * 11 10 9 33 33 H 0.97001 * 119.99978 * 0.02562 * 14 12 11 34 34 H 1.09002 * 109.68683 * 55.86641 * 17 15 14 35 35 H 1.08998 * 109.68013 * 295.31672 * 17 15 14 36 36 H 1.07995 * 119.89718 * 359.75095 * 20 19 18 37 37 H 1.08002 * 120.02176 * 180.11116 * 23 21 20 38 38 H 1.08005 * 119.82800 * 179.97438 * 24 23 21 39 39 H 1.09001 * 109.43686 * 102.13715 * 26 25 19 40 40 H 1.08995 * 109.43891 * 222.05369 * 26 25 19 41 41 H 1.08997 * 117.49726 * 215.00253 * 27 9 7 42 42 H 1.09006 * 117.50128 * 0.02638 * 27 9 7 43 43 H 1.09004 * 117.49804 * 359.97438 * 28 9 7 44 44 H 1.08997 * 117.49692 * 144.97774 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1970 -0.1056 9 6 1.2581 -2.4951 0.1454 10 6 0.7021 -3.0860 -1.1518 11 7 1.8111 -3.4583 -2.0336 12 6 1.5599 -4.0344 -3.2258 13 8 0.4128 -4.2456 -3.5694 14 7 2.5802 -4.3765 -4.0373 15 6 2.3071 -5.0033 -5.3330 16 1 1.3855 -4.5976 -5.7503 17 6 2.1709 -6.5209 -5.1549 18 8 1.8040 -7.0910 -6.4120 19 6 2.5247 -6.7328 -7.5064 20 6 2.4347 -7.5230 -8.6477 21 6 3.1491 -7.1891 -9.7824 22 9 3.0598 -7.9590 -10.8890 23 6 3.9570 -6.0639 -9.7838 24 6 4.0482 -5.2795 -8.6513 25 6 3.3359 -5.6115 -7.5106 26 6 3.4699 -4.7345 -6.2915 27 6 1.7470 -3.4739 1.2149 28 6 0.4417 -2.7017 1.4228 29 1 -0.4849 0.8368 -0.0743 30 1 0.0754 -2.3456 -1.6489 31 1 0.1074 -3.9703 -0.9226 32 1 2.7263 -3.2903 -1.7594 33 1 3.4953 -4.2084 -3.7631 34 1 1.3997 -6.7361 -4.4152 35 1 3.1224 -6.9387 -4.8261 36 1 1.8050 -8.4004 -8.6467 37 1 4.5147 -5.8002 -10.6702 38 1 4.6791 -4.4028 -8.6545 39 1 4.4121 -4.9533 -5.7890 40 1 3.4549 -3.6875 -6.5944 41 1 1.6724 -4.5387 0.9944 42 1 2.6083 -3.1766 1.8133 43 1 0.4449 -1.8968 2.1578 44 1 -0.4917 -3.2583 1.3389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596587412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:02 Heat of formation + Delta-G solvation = -65.883796 kcal Electronic energy + Delta-G solvation = -27834.965441 eV Core-core repulsion = 23667.620377 eV Total energy + Delta-G solvation = -4167.345064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.21368 -41.11979 -39.46255 -37.65969 -36.86966 -35.49559 -33.39326 -32.44931 -32.00097 -30.82162 -29.48059 -26.24166 -26.02432 -25.17055 -23.67759 -22.98332 -21.26384 -20.56607 -20.44203 -19.44870 -18.60668 -17.91971 -17.45446 -16.52953 -16.31636 -16.06685 -15.84365 -15.57110 -15.31261 -14.90191 -14.71970 -14.58662 -14.30817 -14.06444 -13.97528 -13.72653 -13.39316 -13.26575 -13.05228 -12.71524 -12.13247 -12.05530 -11.82412 -11.61751 -11.53167 -11.17191 -11.04020 -10.97235 -10.96060 -10.56666 -10.31050 -9.85557 -9.58727 -9.16814 -9.06176 -8.99632 -8.53856 -8.52011 -8.31852 -8.06881 -6.11767 -4.20677 0.74554 0.92926 2.70762 3.07552 3.21856 3.23492 3.30395 3.31499 3.61089 4.02745 4.25947 4.30572 4.34034 4.40814 4.59119 4.66722 4.73966 4.87981 4.97769 5.09075 5.16338 5.18551 5.31640 5.35572 5.55953 5.65380 5.70461 5.78523 5.82956 5.98283 6.01440 6.29852 6.34091 6.42269 6.53447 6.55460 6.65225 6.78521 7.04873 7.07578 7.22156 7.34188 7.41137 7.50775 7.77087 8.29541 8.52947 8.79917 9.06596 9.46242 10.95986 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.002227 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.879377 B =12567.670932 C =13391.752894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.181 3.819 11 N -0.717 5.717 12 C 0.697 3.303 13 O -0.598 6.598 14 N -0.745 5.745 15 C 0.133 3.867 16 H 0.104 0.896 17 C 0.051 3.949 18 O -0.304 6.304 19 C 0.165 3.835 20 C -0.187 4.187 21 C 0.131 3.869 22 F -0.136 7.136 23 C -0.187 4.187 24 C -0.052 4.052 25 C -0.165 4.165 26 C -0.084 4.084 27 C -0.210 4.210 28 C -0.147 4.147 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.397 0.603 33 H 0.397 0.603 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.985 -12.053 -14.847 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.058 3.942 11 N -0.369 5.369 12 C 0.397 3.603 13 O -0.477 6.477 14 N -0.403 5.403 15 C 0.026 3.974 16 H 0.122 0.878 17 C -0.025 4.025 18 O -0.216 6.216 19 C 0.118 3.882 20 C -0.207 4.207 21 C 0.111 3.889 22 F -0.115 7.115 23 C -0.206 4.206 24 C -0.070 4.070 25 C -0.167 4.167 26 C -0.122 4.122 27 C -0.248 4.248 28 C -0.186 4.186 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.230 0.770 33 H 0.231 0.769 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.534 -12.256 -15.067 21.214 hybrid contribution 1.344 1.166 0.139 1.785 sum 9.878 -11.090 -14.928 21.057 Atomic orbital electron populations 1.69975 1.05892 1.26977 1.48077 1.24994 0.94804 0.98962 0.94301 0.86634 0.79915 0.83576 0.78127 1.20690 1.21147 1.19850 1.20316 0.92761 0.88604 1.52172 0.92259 1.19038 0.98653 0.93903 0.85733 1.20886 0.86540 0.96763 0.90043 1.45157 1.11478 1.63296 1.16939 1.16053 0.84493 0.78838 0.80900 1.90903 1.19688 1.61758 1.75357 1.44982 1.08871 1.67653 1.18813 1.21228 0.99976 0.92364 0.83809 0.87816 1.23581 1.02652 0.93377 0.82914 1.86066 1.54150 1.66526 1.14887 1.18377 0.90859 0.91547 0.87386 1.20417 1.05558 1.03029 0.91682 1.17250 0.98055 0.90743 0.82814 1.91513 1.94962 1.74192 1.50794 1.20993 1.03029 0.96036 1.00566 1.20738 0.96892 0.98614 0.90744 1.19789 1.02382 0.96999 0.97505 1.20763 0.98731 1.00054 0.92648 1.23022 0.98673 0.95650 1.07426 1.22496 0.92311 1.01086 1.02662 0.92802 0.91107 0.94598 0.76986 0.76911 0.86441 0.91387 0.83861 0.84515 0.84496 0.89524 0.88818 0.91646 0.90393 0.89800 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.84 12.91 55.43 0.72 -23.12 16 2 C 0.07 1.91 5.39 -17.81 -0.10 1.82 16 3 Si 0.89 20.08 29.55 -169.99 -5.02 15.06 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.50 -12.46 8.63 -34.44 -0.30 -12.76 16 8 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 9 C 0.03 0.62 1.38 -155.66 -0.21 0.41 16 10 C 0.18 3.98 5.50 -4.04 -0.02 3.96 16 11 N -0.72 -13.05 5.48 -65.23 -0.36 -13.41 16 12 C 0.70 12.24 8.55 -86.92 -0.74 11.50 16 13 O -0.60 -12.96 16.00 5.29 0.08 -12.88 16 14 N -0.75 -9.14 5.10 -58.44 -0.30 -9.44 16 15 C 0.13 1.51 2.69 -67.68 -0.18 1.33 16 16 H 0.10 1.48 7.57 -51.93 -0.39 1.09 16 17 C 0.05 0.56 6.63 37.37 0.25 0.81 16 18 O -0.30 -3.67 10.27 -19.24 -0.20 -3.87 16 19 C 0.16 1.79 6.47 -39.20 -0.25 1.54 16 20 C -0.19 -1.93 9.92 -39.28 -0.39 -2.32 16 21 C 0.13 1.27 7.30 -39.50 -0.29 0.98 16 22 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 23 C -0.19 -1.53 10.03 -39.54 -0.40 -1.93 16 24 C -0.05 -0.40 9.66 -39.54 -0.38 -0.79 16 25 C -0.17 -1.54 5.75 -104.42 -0.60 -2.14 16 26 C -0.08 -0.71 5.36 -27.81 -0.15 -0.86 16 27 C -0.21 -4.20 9.96 -26.69 -0.27 -4.47 16 28 C -0.15 -3.28 9.42 -26.69 -0.25 -3.53 16 29 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 30 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.40 6.44 8.38 -40.82 -0.34 6.10 16 33 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 34 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -30.10 376.70 -9.77 -39.87 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.12 Total: 9.88 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -4.28 Total: -6.44 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.06 Total: -45.96 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.11 Total: -16.75 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.10 -9.77 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596587412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.014 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds