Wall clock time and date at job start Tue Mar 31 2020 18:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48504 * 109.47162 * 270.00053 * 3 2 1 5 5 H 1.48501 * 109.47004 * 30.00146 * 3 2 1 6 6 H 1.48506 * 109.46861 * 150.00046 * 3 2 1 7 7 C 1.37881 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99480 * 173.55167 * 7 2 1 9 9 C 1.50699 * 120.00110 * 353.55525 * 7 2 1 10 10 C 1.52998 * 115.54982 * 85.40815 * 9 7 2 11 11 N 1.46499 * 109.47398 * 65.13976 * 10 9 7 12 12 C 1.34774 * 120.00099 * 178.28858 * 11 10 9 13 13 O 1.21587 * 120.00049 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00105 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99965 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.69421 * 34.43610 * 15 14 12 17 17 C 1.53404 * 109.69976 * 273.83507 * 15 14 12 18 18 O 1.42827 * 108.39074 * 175.59066 * 17 15 14 19 19 C 1.35841 * 117.87342 * 49.12589 * 18 17 15 20 20 C 1.39114 * 118.48193 * 162.87277 * 19 18 17 21 21 C 1.38184 * 120.19870 * 179.78601 * 20 19 18 22 22 F 1.35100 * 120.04348 * 179.97438 * 21 20 19 23 23 C 1.38519 * 119.90879 * 359.97438 * 21 20 19 24 24 C 1.38058 * 119.95429 * 0.08910 * 23 21 20 25 25 C 1.38402 * 121.80553 * 342.81159 * 19 18 17 26 26 C 1.50775 * 121.39204 * 0.54156 * 25 19 18 27 27 C 1.53001 * 117.49472 * 231.07400 * 9 7 2 28 28 C 1.52998 * 117.49796 * 299.73195 * 9 7 2 29 29 H 0.97000 * 119.99601 * 5.07469 * 1 2 3 30 30 H 1.08999 * 109.47097 * 305.13623 * 10 9 7 31 31 H 1.09007 * 109.46663 * 185.14131 * 10 9 7 32 32 H 0.97001 * 119.99983 * 358.29046 * 11 10 9 33 33 H 0.97001 * 119.99978 * 0.02562 * 14 12 11 34 34 H 1.09002 * 109.68683 * 55.86641 * 17 15 14 35 35 H 1.08998 * 109.68013 * 295.31672 * 17 15 14 36 36 H 1.07995 * 119.89718 * 359.75095 * 20 19 18 37 37 H 1.08002 * 120.02176 * 180.11116 * 23 21 20 38 38 H 1.08005 * 119.82800 * 179.97438 * 24 23 21 39 39 H 1.09001 * 109.43686 * 102.13715 * 26 25 19 40 40 H 1.08995 * 109.43891 * 222.05369 * 26 25 19 41 41 H 1.08997 * 117.49726 * 215.00253 * 27 9 7 42 42 H 1.09006 * 117.50128 * 0.02638 * 27 9 7 43 43 H 1.09004 * 117.49804 * 359.97438 * 28 9 7 44 44 H 1.08997 * 117.49692 * 144.97774 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1970 -0.1056 9 6 1.2581 -2.4951 0.1454 10 6 0.7021 -3.0860 -1.1518 11 7 1.8111 -3.4583 -2.0336 12 6 1.5599 -4.0344 -3.2258 13 8 0.4128 -4.2456 -3.5694 14 7 2.5802 -4.3765 -4.0373 15 6 2.3071 -5.0033 -5.3330 16 1 1.3855 -4.5976 -5.7503 17 6 2.1709 -6.5209 -5.1549 18 8 1.8040 -7.0910 -6.4120 19 6 2.5247 -6.7328 -7.5064 20 6 2.4347 -7.5230 -8.6477 21 6 3.1491 -7.1891 -9.7824 22 9 3.0598 -7.9590 -10.8890 23 6 3.9570 -6.0639 -9.7838 24 6 4.0482 -5.2795 -8.6513 25 6 3.3359 -5.6115 -7.5106 26 6 3.4699 -4.7345 -6.2915 27 6 1.7470 -3.4739 1.2149 28 6 0.4417 -2.7017 1.4228 29 1 -0.4849 0.8368 -0.0743 30 1 0.0754 -2.3456 -1.6489 31 1 0.1074 -3.9703 -0.9226 32 1 2.7263 -3.2903 -1.7594 33 1 3.4953 -4.2084 -3.7631 34 1 1.3997 -6.7361 -4.4152 35 1 3.1224 -6.9387 -4.8261 36 1 1.8050 -8.4004 -8.6467 37 1 4.5147 -5.8002 -10.6702 38 1 4.6791 -4.4028 -8.6545 39 1 4.4121 -4.9533 -5.7890 40 1 3.4549 -3.6875 -6.5944 41 1 1.6724 -4.5387 0.9944 42 1 2.6083 -3.1766 1.8133 43 1 0.4449 -1.8968 2.1578 44 1 -0.4917 -3.2583 1.3389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596587412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:01 Heat of formation + Delta-G solvation = -84.405568 kcal Electronic energy + Delta-G solvation = -27835.768605 eV Core-core repulsion = 23667.620377 eV Total energy + Delta-G solvation = -4168.148228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.96499 -41.96989 -40.80116 -38.65643 -38.32549 -36.59331 -34.96991 -33.95707 -33.36710 -31.52700 -30.43159 -27.95792 -26.96925 -26.76797 -24.53051 -23.76840 -22.94490 -21.81644 -21.40710 -21.21828 -19.40368 -19.28748 -18.39849 -17.91066 -17.40472 -17.03138 -16.71319 -16.64775 -16.56411 -16.19252 -16.01995 -15.78197 -15.61779 -15.28867 -14.98004 -14.71433 -14.51800 -14.40686 -14.11522 -13.90500 -13.70482 -13.44605 -12.90613 -12.83764 -12.80268 -12.70052 -12.34119 -12.28658 -12.02365 -12.00783 -11.77119 -11.51046 -11.28582 -10.82837 -10.44331 -10.34105 -10.03903 -9.81761 -9.63771 -9.24878 -8.07605 -6.20622 0.04136 0.23173 1.43535 1.46889 1.54727 1.63109 2.13025 2.22156 2.44177 2.50484 3.20809 3.28251 3.32330 3.48450 3.56156 3.60167 3.77689 3.84655 4.01266 4.09408 4.22317 4.27645 4.40655 4.47398 4.52789 4.59148 4.68280 4.76593 4.85567 4.90240 4.99209 5.02036 5.02616 5.06063 5.16591 5.30009 5.32898 5.41745 5.61294 5.63792 5.70022 5.72408 5.80953 6.13329 6.29723 6.39084 6.86768 7.23815 7.48906 7.67429 8.99901 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.002227 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.879377 B =12567.670932 C =13391.752894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.501 4.501 8 H 0.067 0.933 9 C 0.006 3.994 10 C 0.199 3.801 11 N -0.711 5.711 12 C 0.697 3.303 13 O -0.643 6.643 14 N -0.720 5.720 15 C 0.134 3.866 16 H 0.069 0.931 17 C 0.054 3.946 18 O -0.324 6.324 19 C 0.140 3.860 20 C -0.200 4.200 21 C 0.117 3.883 22 F -0.142 7.142 23 C -0.181 4.181 24 C -0.045 4.045 25 C -0.167 4.167 26 C -0.075 4.075 27 C -0.174 4.174 28 C -0.162 4.162 29 H 0.258 0.742 30 H 0.025 0.975 31 H 0.033 0.967 32 H 0.409 0.591 33 H 0.417 0.583 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.141 0.859 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.423 -11.940 -15.562 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.006 3.994 10 C 0.074 3.926 11 N -0.364 5.364 12 C 0.397 3.603 13 O -0.525 6.525 14 N -0.378 5.378 15 C 0.027 3.973 16 H 0.088 0.912 17 C -0.022 4.022 18 O -0.237 6.237 19 C 0.094 3.906 20 C -0.220 4.220 21 C 0.098 3.902 22 F -0.121 7.121 23 C -0.199 4.199 24 C -0.063 4.063 25 C -0.168 4.168 26 C -0.112 4.112 27 C -0.211 4.211 28 C -0.201 4.201 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.051 0.949 32 H 0.245 0.755 33 H 0.255 0.745 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.159 0.841 37 H 0.179 0.821 38 H 0.188 0.812 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.058 -12.159 -15.797 23.298 hybrid contribution 0.275 1.069 0.295 1.142 sum 12.333 -11.090 -15.503 22.703 Atomic orbital electron populations 1.70114 1.07352 1.27269 1.49955 1.25727 0.95419 1.02144 0.94501 0.85684 0.78937 0.79801 0.77965 1.20518 1.21914 1.18669 1.20662 0.93192 0.89427 1.50629 0.91532 1.19058 0.99645 0.94500 0.86233 1.20397 0.87052 0.95209 0.89954 1.44875 1.11097 1.63514 1.16945 1.16185 0.84752 0.78455 0.80935 1.90880 1.22065 1.63391 1.76208 1.44682 1.08650 1.66260 1.18226 1.21242 1.00210 0.92317 0.83535 0.91236 1.23498 1.03067 0.93139 0.82489 1.86025 1.55145 1.67036 1.15468 1.18584 0.92043 0.92809 0.87127 1.20505 1.06039 1.03298 0.92120 1.17444 0.98775 0.91534 0.82486 1.91496 1.95082 1.74521 1.50992 1.21324 1.02051 0.94935 1.01609 1.21088 0.96387 0.99196 0.89597 1.19967 1.02033 0.96346 0.98482 1.20758 0.98302 1.00550 0.91578 1.23004 0.97230 0.96261 1.04584 1.22442 0.93875 1.01495 1.02245 0.93322 0.95653 0.94908 0.75550 0.74545 0.88597 0.88862 0.84148 0.82144 0.81184 0.86493 0.87567 0.89259 0.89481 0.91858 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.78 12.91 21.45 0.28 -50.50 16 2 C 0.02 1.17 5.39 84.65 0.46 1.63 16 3 Si 0.95 41.04 29.55 68.60 2.03 43.06 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.50 -24.56 8.63 25.60 0.22 -24.34 16 8 H 0.07 3.10 7.82 -2.91 -0.02 3.07 16 9 C 0.01 0.29 1.38 -52.93 -0.07 0.22 16 10 C 0.20 8.85 5.50 86.38 0.48 9.33 16 11 N -0.71 -25.37 5.48 -478.54 -2.62 -27.99 16 12 C 0.70 24.23 8.55 179.06 1.53 25.76 16 13 O -0.64 -28.68 16.00 -3.99 -0.06 -28.75 16 14 N -0.72 -16.40 5.10 -457.05 -2.33 -18.73 16 15 C 0.13 2.89 2.69 45.15 0.12 3.01 16 16 H 0.07 2.02 7.57 -2.39 -0.02 2.01 16 17 C 0.05 1.17 6.63 72.12 0.48 1.65 16 18 O -0.32 -7.92 10.27 -91.77 -0.94 -8.86 16 19 C 0.14 2.96 6.47 22.52 0.15 3.11 16 20 C -0.20 -4.10 9.92 22.47 0.22 -3.88 16 21 C 0.12 2.15 7.30 22.32 0.16 2.31 16 22 F -0.14 -2.80 17.27 44.97 0.78 -2.03 16 23 C -0.18 -2.45 10.03 22.29 0.22 -2.22 16 24 C -0.04 -0.54 9.66 22.30 0.22 -0.32 16 25 C -0.17 -2.70 5.75 -19.73 -0.11 -2.82 16 26 C -0.07 -1.02 5.36 29.89 0.16 -0.85 16 27 C -0.17 -6.56 9.96 30.62 0.30 -6.26 16 28 C -0.16 -7.21 9.42 30.62 0.29 -6.92 16 29 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.03 1.46 8.09 -2.38 -0.02 1.44 16 32 H 0.41 12.45 8.38 -92.71 -0.78 11.67 16 33 H 0.42 6.34 8.60 -92.71 -0.80 5.54 16 34 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.12 0.95 8.10 -2.39 -0.02 0.93 16 40 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 43 H 0.06 3.04 8.14 -2.38 -0.02 3.02 16 44 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -67.81 376.70 1.41 -66.40 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -0.53 Total: 27.99 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 4.82 Total: -0.60 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -4.67 Total: -97.22 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -1.01 Total: -37.61 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -67.81 1.41 -66.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596587412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.007 kcal (2) G-P(sol) polarization free energy of solvation -67.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds