Wall clock time and date at job start Tue Mar 31 2020 17:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34717 * 117.00287 * 2 1 4 4 O 1.21465 * 119.99502 * 359.97438 * 3 2 1 5 5 C 1.47786 * 120.00418 * 179.97438 * 3 2 1 6 6 C 1.40053 * 120.10973 * 179.97438 * 5 3 2 7 7 C 1.38366 * 117.98130 * 179.97438 * 6 5 3 8 8 C 1.39488 * 118.03573 * 0.02562 * 7 6 5 9 9 N 1.38944 * 120.03691 * 180.02562 * 8 7 6 10 10 C 1.34782 * 120.00114 * 16.49067 * 9 8 7 11 11 O 1.21579 * 119.99822 * 5.64959 * 10 9 8 12 12 N 1.34771 * 120.00293 * 185.92979 * 10 9 8 13 13 C 1.46927 * 120.63304 * 174.25072 * 12 10 9 14 14 C 1.53620 * 108.54579 * 126.36464 * 13 12 10 15 15 C 1.53040 * 109.23833 * 54.85804 * 14 13 12 16 16 C 1.53039 * 109.54050 * 298.51024 * 15 14 13 17 17 H 1.09002 * 109.49408 * 301.41355 * 16 15 14 18 18 C 1.50696 * 109.50005 * 181.31685 * 16 15 14 19 19 H 1.08005 * 120.00208 * 0.16551 * 18 16 15 20 20 C 1.37883 * 120.00153 * 180.15716 * 18 16 15 21 21 N 1.31510 * 119.99802 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00008 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46844 * 90.00312 * 22 20 18 24 24 H 1.48497 * 109.46851 * 210.00727 * 22 20 18 25 25 H 1.48503 * 109.47088 * 330.00442 * 22 20 18 26 26 C 1.46925 * 120.63243 * 354.52785 * 12 10 9 27 27 N 1.32808 * 119.92900 * 0.27061 * 8 7 6 28 28 N 1.28358 * 122.17454 * 359.43031 * 27 8 7 29 29 H 1.08998 * 109.46577 * 60.00466 * 1 2 3 30 30 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47164 * 300.00473 * 1 2 3 32 32 H 1.07998 * 121.01133 * 359.95441 * 6 5 3 33 33 H 1.08008 * 120.97827 * 179.97438 * 7 6 5 34 34 H 0.97001 * 120.00310 * 196.48999 * 9 8 7 35 35 H 1.08998 * 109.58542 * 246.20142 * 13 12 10 36 36 H 1.09004 * 109.58699 * 6.62463 * 13 12 10 37 37 H 1.08998 * 109.63609 * 294.86584 * 14 13 12 38 38 H 1.09004 * 109.46029 * 174.73838 * 14 13 12 39 39 H 1.09005 * 109.45992 * 178.48709 * 15 14 13 40 40 H 1.09000 * 109.46160 * 58.53214 * 15 14 13 41 41 H 0.97002 * 119.99801 * 179.97438 * 21 20 18 42 42 H 1.09008 * 109.58282 * 353.37389 * 26 12 10 43 43 H 1.09004 * 109.58982 * 113.65180 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5395 1.2777 0.0006 6 6 4.1777 2.5244 0.0000 7 6 5.5612 2.5454 0.0011 8 6 6.2355 1.3244 0.0022 9 7 7.6247 1.2970 0.0039 10 6 8.3201 2.4028 0.3358 11 8 7.7355 3.3923 0.7325 12 7 9.6630 2.4136 0.2227 13 6 10.4244 3.6477 0.4596 14 6 11.5105 3.3584 1.5069 15 6 12.3611 2.1758 1.0376 16 6 11.4791 0.9324 0.9028 17 1 11.0125 0.7116 1.8628 18 6 12.3235 -0.2390 0.4719 19 1 13.3841 -0.1107 0.3128 20 6 11.7423 -1.4746 0.2809 21 7 10.4509 -1.6308 0.4743 22 14 12.7892 -2.9269 -0.2525 23 1 13.3061 -3.6318 0.9480 24 1 11.9643 -3.8620 -1.0589 25 1 13.9294 -2.4411 -1.0706 26 6 10.3931 1.1930 -0.1458 27 7 5.5483 0.1879 -0.0033 28 7 4.2649 0.1652 0.0011 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.6073 3.4414 -0.0015 33 1 6.1030 3.4798 0.0004 34 1 8.0941 0.4821 -0.2338 35 1 10.8881 3.9753 -0.4708 36 1 9.7553 4.4244 0.8301 37 1 11.0435 3.1147 2.4611 38 1 12.1438 4.2375 1.6257 39 1 13.1498 1.9844 1.7654 40 1 12.8079 2.4106 0.0716 41 1 10.0419 -2.5000 0.3395 42 1 9.7033 0.3494 -0.1748 43 1 10.8522 1.3235 -1.1258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596892172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:45 Heat of formation + Delta-G solvation = -36.565843 kcal Electronic energy + Delta-G solvation = -28529.528678 eV Core-core repulsion = 24383.374897 eV Total energy + Delta-G solvation = -4146.153780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54324 -40.54141 -39.80673 -37.38562 -36.70467 -35.27888 -33.50861 -33.14011 -32.54451 -31.03070 -29.90734 -28.06702 -25.73259 -25.26985 -24.96900 -24.02501 -22.20171 -21.73394 -20.57987 -19.47176 -18.80288 -18.14869 -17.43061 -17.25021 -16.68240 -16.63105 -16.43123 -15.68354 -15.32989 -14.80112 -14.64456 -14.46832 -13.96934 -13.95859 -13.71868 -13.46559 -13.43869 -13.11186 -12.66988 -12.51758 -12.40821 -12.09618 -11.88056 -11.34231 -11.16467 -11.11574 -11.01229 -10.89208 -10.67883 -10.53799 -10.45438 -10.37722 -10.20501 -10.10022 -9.66567 -9.32551 -9.17482 -8.84644 -8.64674 -8.05740 -6.26481 -4.31712 0.29211 0.77585 2.15329 2.27415 2.51419 3.10564 3.19417 3.28204 3.29388 3.66545 3.79922 4.01391 4.26761 4.39130 4.57722 4.73994 4.88200 4.92810 4.96322 5.08599 5.27498 5.35506 5.42412 5.47785 5.57987 5.71796 5.82622 5.95652 6.04613 6.10694 6.16896 6.23378 6.45607 6.48150 6.60839 6.63956 6.73346 6.82531 7.12540 7.24031 7.42646 7.57119 7.76384 7.92910 8.16774 8.49630 8.58143 8.73107 9.35723 10.81653 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002938 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.878569 B = 9527.280887 C =11345.007694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.334 6.334 3 C 0.539 3.461 4 O -0.502 6.502 5 C -0.016 4.016 6 C -0.043 4.043 7 C -0.146 4.146 8 C 0.357 3.643 9 N -0.649 5.649 10 C 0.711 3.289 11 O -0.589 6.589 12 N -0.606 5.606 13 C 0.128 3.872 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.039 3.961 17 H 0.032 0.968 18 C -0.516 4.516 19 H 0.061 0.939 20 C 0.063 3.937 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.103 3.897 27 N -0.272 5.272 28 N -0.148 5.148 29 H 0.064 0.936 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.163 0.837 33 H 0.197 0.803 34 H 0.432 0.568 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.267 0.733 42 H 0.105 0.895 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 7.425 -2.394 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.249 6.249 3 C 0.381 3.619 4 O -0.388 6.388 5 C -0.163 4.163 6 C -0.071 4.071 7 C -0.177 4.177 8 C 0.120 3.880 9 N -0.299 5.299 10 C 0.413 3.587 11 O -0.469 6.469 12 N -0.339 5.339 13 C 0.005 3.995 14 C -0.173 4.173 15 C -0.149 4.149 16 C 0.020 3.980 17 H 0.050 0.950 18 C -0.555 4.555 19 H 0.079 0.921 20 C -0.139 4.139 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.018 4.018 27 N -0.125 5.125 28 N 0.003 4.997 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.181 0.819 33 H 0.213 0.787 34 H 0.276 0.724 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.584 6.668 -2.152 13.538 hybrid contribution 0.598 0.083 -0.310 0.678 sum -10.987 6.751 -2.461 13.128 Atomic orbital electron populations 1.23358 0.75896 1.04080 1.02604 1.86696 1.23349 1.31503 1.83339 1.20319 0.87246 0.81848 0.72490 1.90852 1.65807 1.36101 1.46081 1.21437 0.92445 0.92790 1.09591 1.22269 0.94428 0.98196 0.92247 1.23161 0.93852 1.01279 0.99454 1.20081 0.85905 0.92002 0.90054 1.42698 1.02734 1.16703 1.67732 1.15697 0.82625 0.81935 0.78428 1.90696 1.68343 1.34210 1.53679 1.47814 1.02949 1.13680 1.69500 1.21618 0.93415 0.85655 0.98780 1.22042 0.97265 0.99295 0.98672 1.21622 0.98090 0.95055 1.00119 1.18968 0.92122 0.91896 0.95031 0.94959 1.21125 0.94731 0.93066 1.46541 0.92074 1.25007 0.95145 0.98897 0.94831 1.69735 1.09944 1.24660 1.48994 0.86505 0.80197 0.82113 0.78724 1.20595 1.21024 1.19891 1.22463 0.96934 0.83135 0.99226 1.73317 1.00264 1.22659 1.16229 1.73327 0.98720 1.24542 1.03102 0.91715 0.87690 0.91707 0.81928 0.78692 0.72449 0.91682 0.89601 0.91988 0.91836 0.92729 0.92950 0.92283 0.87690 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.33 -4.18 10.39 -40.54 -0.42 -4.60 16 3 C 0.54 7.38 7.95 34.64 0.28 7.65 16 4 O -0.50 -7.18 16.17 -19.24 -0.31 -7.49 16 5 C -0.02 -0.23 6.83 -82.86 -0.57 -0.79 16 6 C -0.04 -0.57 9.71 -38.85 -0.38 -0.94 16 7 C -0.15 -2.15 8.91 -39.07 -0.35 -2.50 16 8 C 0.36 6.00 7.63 -154.60 -1.18 4.83 16 9 N -0.65 -11.32 5.31 -15.72 -0.08 -11.40 16 10 C 0.71 12.78 8.16 -86.92 -0.71 12.07 16 11 O -0.59 -10.83 12.51 5.30 0.07 -10.77 16 12 N -0.61 -10.67 2.97 -178.23 -0.53 -11.20 16 13 C 0.13 1.94 6.47 -3.49 -0.02 1.92 16 14 C -0.13 -2.04 6.10 -26.39 -0.16 -2.20 16 15 C -0.11 -1.98 5.10 -26.69 -0.14 -2.12 16 16 C 0.04 0.84 2.25 -91.66 -0.21 0.64 16 17 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.52 -12.48 8.56 -34.44 -0.29 -12.77 16 19 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 21 N -0.89 -22.56 11.39 55.43 0.63 -21.93 16 22 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 26 C 0.10 2.05 5.35 -3.71 -0.02 2.03 16 27 N -0.27 -4.82 11.54 31.27 0.36 -4.46 16 28 N -0.15 -2.48 11.30 33.31 0.38 -2.10 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.16 1.71 7.71 -52.49 -0.40 1.31 16 33 H 0.20 2.87 5.28 -52.57 -0.28 2.59 16 34 H 0.43 7.83 6.31 -40.82 -0.26 7.58 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 42 H 0.11 2.24 3.76 -51.92 -0.20 2.04 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -27.47 358.85 -7.56 -35.03 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.27 Total: 8.36 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: -2.77 Total: 10.61 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.76 Total: -51.09 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.67 Total: -22.86 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.47 -7.56 -35.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596892172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.537 kcal (2) G-P(sol) polarization free energy of solvation -27.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds