Wall clock time and date at job start Tue Mar 31 2020 17:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34717 * 117.00287 * 2 1 4 4 O 1.21465 * 119.99502 * 359.97438 * 3 2 1 5 5 C 1.47786 * 120.00418 * 179.97438 * 3 2 1 6 6 C 1.40053 * 120.10973 * 179.97438 * 5 3 2 7 7 C 1.38366 * 117.98130 * 179.97438 * 6 5 3 8 8 C 1.39488 * 118.03573 * 0.02562 * 7 6 5 9 9 N 1.38944 * 120.03691 * 180.02562 * 8 7 6 10 10 C 1.34782 * 120.00114 * 16.49067 * 9 8 7 11 11 O 1.21579 * 119.99822 * 5.64959 * 10 9 8 12 12 N 1.34771 * 120.00293 * 185.92979 * 10 9 8 13 13 C 1.46927 * 120.63304 * 174.25072 * 12 10 9 14 14 C 1.53620 * 108.54579 * 126.36464 * 13 12 10 15 15 C 1.53040 * 109.23833 * 54.85804 * 14 13 12 16 16 C 1.53039 * 109.54050 * 298.51024 * 15 14 13 17 17 H 1.09002 * 109.49408 * 301.41355 * 16 15 14 18 18 C 1.50696 * 109.50005 * 181.31685 * 16 15 14 19 19 H 1.08005 * 120.00208 * 0.16551 * 18 16 15 20 20 C 1.37883 * 120.00153 * 180.15716 * 18 16 15 21 21 N 1.31510 * 119.99802 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00008 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46844 * 90.00312 * 22 20 18 24 24 H 1.48497 * 109.46851 * 210.00727 * 22 20 18 25 25 H 1.48503 * 109.47088 * 330.00442 * 22 20 18 26 26 C 1.46925 * 120.63243 * 354.52785 * 12 10 9 27 27 N 1.32808 * 119.92900 * 0.27061 * 8 7 6 28 28 N 1.28358 * 122.17454 * 359.43031 * 27 8 7 29 29 H 1.08998 * 109.46577 * 60.00466 * 1 2 3 30 30 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47164 * 300.00473 * 1 2 3 32 32 H 1.07998 * 121.01133 * 359.95441 * 6 5 3 33 33 H 1.08008 * 120.97827 * 179.97438 * 7 6 5 34 34 H 0.97001 * 120.00310 * 196.48999 * 9 8 7 35 35 H 1.08998 * 109.58542 * 246.20142 * 13 12 10 36 36 H 1.09004 * 109.58699 * 6.62463 * 13 12 10 37 37 H 1.08998 * 109.63609 * 294.86584 * 14 13 12 38 38 H 1.09004 * 109.46029 * 174.73838 * 14 13 12 39 39 H 1.09005 * 109.45992 * 178.48709 * 15 14 13 40 40 H 1.09000 * 109.46160 * 58.53214 * 15 14 13 41 41 H 0.97002 * 119.99801 * 179.97438 * 21 20 18 42 42 H 1.09008 * 109.58282 * 353.37389 * 26 12 10 43 43 H 1.09004 * 109.58982 * 113.65180 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5395 1.2777 0.0006 6 6 4.1777 2.5244 0.0000 7 6 5.5612 2.5454 0.0011 8 6 6.2355 1.3244 0.0022 9 7 7.6247 1.2970 0.0039 10 6 8.3201 2.4028 0.3358 11 8 7.7355 3.3923 0.7325 12 7 9.6630 2.4136 0.2227 13 6 10.4244 3.6477 0.4596 14 6 11.5105 3.3584 1.5069 15 6 12.3611 2.1758 1.0376 16 6 11.4791 0.9324 0.9028 17 1 11.0125 0.7116 1.8628 18 6 12.3235 -0.2390 0.4719 19 1 13.3841 -0.1107 0.3128 20 6 11.7423 -1.4746 0.2809 21 7 10.4509 -1.6308 0.4743 22 14 12.7892 -2.9269 -0.2525 23 1 13.3061 -3.6318 0.9480 24 1 11.9643 -3.8620 -1.0589 25 1 13.9294 -2.4411 -1.0706 26 6 10.3931 1.1930 -0.1458 27 7 5.5483 0.1879 -0.0033 28 7 4.2649 0.1652 0.0011 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.6073 3.4414 -0.0015 33 1 6.1030 3.4798 0.0004 34 1 8.0941 0.4821 -0.2338 35 1 10.8881 3.9753 -0.4708 36 1 9.7553 4.4244 0.8301 37 1 11.0435 3.1147 2.4611 38 1 12.1438 4.2375 1.6257 39 1 13.1498 1.9844 1.7654 40 1 12.8079 2.4106 0.0716 41 1 10.0419 -2.5000 0.3395 42 1 9.7033 0.3494 -0.1748 43 1 10.8522 1.3235 -1.1258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596892172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:44 Heat of formation + Delta-G solvation = -51.671211 kcal Electronic energy + Delta-G solvation = -28530.183696 eV Core-core repulsion = 24383.374897 eV Total energy + Delta-G solvation = -4146.808798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.78922 -41.72984 -41.00710 -38.81880 -37.70546 -36.62731 -35.17126 -34.37552 -33.93724 -32.36135 -31.44334 -28.89017 -27.08313 -26.86410 -26.26342 -25.27514 -23.53911 -22.95608 -21.99761 -20.81030 -20.10380 -19.31698 -18.68627 -18.51308 -18.27051 -17.73609 -17.63602 -17.02819 -16.67564 -16.47019 -15.98341 -15.56126 -15.27119 -15.21092 -15.04473 -14.66497 -14.59090 -14.34567 -14.22670 -13.95350 -13.51547 -13.27143 -12.96412 -12.88045 -12.72204 -12.64247 -12.28966 -12.23574 -12.03396 -11.86066 -11.84173 -11.68125 -11.57580 -11.41571 -11.09648 -10.91206 -10.74896 -10.51717 -10.15468 -9.48023 -8.14069 -6.24840 -0.88506 -0.40448 1.00853 1.08507 1.43428 1.45098 1.48798 1.56029 1.77455 2.40055 2.42852 2.50027 2.85642 3.16677 3.21746 3.41011 3.68328 3.76339 4.09897 4.16855 4.24595 4.25513 4.32140 4.35594 4.57412 4.60158 4.62725 4.72105 4.75425 4.80100 4.87803 5.05521 5.08955 5.12259 5.18553 5.23659 5.28501 5.42999 5.58654 5.73996 5.83786 5.94974 6.28593 6.40942 6.55952 6.84955 7.12788 7.31557 7.44733 8.91511 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002938 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.878569 B = 9527.280887 C =11345.007694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.543 3.457 4 O -0.508 6.508 5 C -0.015 4.015 6 C -0.026 4.026 7 C -0.141 4.141 8 C 0.341 3.659 9 N -0.653 5.653 10 C 0.710 3.290 11 O -0.594 6.594 12 N -0.607 5.607 13 C 0.124 3.876 14 C -0.126 4.126 15 C -0.106 4.106 16 C 0.036 3.964 17 H -0.007 1.007 18 C -0.529 4.529 19 H 0.059 0.941 20 C 0.022 3.978 21 N -0.913 5.913 22 Si 0.950 3.050 23 H -0.284 1.284 24 H -0.286 1.286 25 H -0.267 1.267 26 C 0.117 3.883 27 N -0.298 5.298 28 N -0.168 5.168 29 H 0.072 0.928 30 H 0.132 0.868 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.200 0.800 34 H 0.426 0.574 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.264 0.736 42 H 0.088 0.912 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.531 8.871 -2.897 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.261 6.261 3 C 0.385 3.615 4 O -0.395 6.395 5 C -0.162 4.162 6 C -0.054 4.054 7 C -0.172 4.172 8 C 0.104 3.896 9 N -0.302 5.302 10 C 0.411 3.589 11 O -0.475 6.475 12 N -0.341 5.341 13 C 0.003 3.997 14 C -0.164 4.164 15 C -0.144 4.144 16 C 0.017 3.983 17 H 0.011 0.989 18 C -0.568 4.568 19 H 0.077 0.923 20 C -0.178 4.178 21 N -0.553 5.553 22 Si 0.777 3.223 23 H -0.210 1.210 24 H -0.212 1.212 25 H -0.192 1.192 26 C -0.005 4.005 27 N -0.150 5.150 28 N -0.016 5.016 29 H 0.091 0.909 30 H 0.150 0.850 31 H 0.089 0.911 32 H 0.212 0.788 33 H 0.216 0.784 34 H 0.268 0.732 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.114 8.117 -2.652 14.821 hybrid contribution 0.636 -0.374 -0.121 0.747 sum -11.479 7.743 -2.773 14.121 Atomic orbital electron populations 1.23732 0.73418 1.06217 1.03295 1.86680 1.25812 1.30827 1.82824 1.20110 0.86748 0.82197 0.72418 1.90846 1.65787 1.36338 1.46565 1.21767 0.93216 0.92886 1.08373 1.22568 0.93805 0.98828 0.90182 1.23177 0.94435 1.00407 0.99207 1.20236 0.85646 0.92711 0.91007 1.42671 1.03164 1.16323 1.68015 1.15755 0.82713 0.81997 0.78398 1.90682 1.68390 1.34360 1.54060 1.47816 1.02933 1.13787 1.69521 1.21861 0.93335 0.84631 0.99909 1.21981 0.97246 0.99421 0.97716 1.21530 0.97702 0.94414 1.00727 1.18916 0.92833 0.93154 0.93414 0.98889 1.21447 0.94970 0.94184 1.46170 0.92268 1.25639 0.96012 1.01007 0.95170 1.69860 1.10923 1.24736 1.49732 0.85675 0.79017 0.79560 0.78098 1.20984 1.21178 1.19172 1.22069 0.96128 0.83747 0.98566 1.73242 1.00902 1.23567 1.17264 1.73256 0.98450 1.25755 1.04141 0.90946 0.84959 0.91088 0.78794 0.78359 0.73161 0.89389 0.88800 0.93556 0.88170 0.93075 0.91915 0.92662 0.89413 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -8.23 10.39 -56.27 -0.58 -8.82 16 3 C 0.54 14.11 7.95 70.35 0.56 14.67 16 4 O -0.51 -13.52 16.17 19.95 0.32 -13.20 16 5 C -0.01 -0.41 6.83 41.96 0.29 -0.13 16 6 C -0.03 -0.64 9.71 22.74 0.22 -0.42 16 7 C -0.14 -4.02 8.91 22.60 0.20 -3.82 16 8 C 0.34 11.60 7.63 133.05 1.01 12.62 16 9 N -0.65 -23.28 5.31 -321.89 -1.71 -24.99 16 10 C 0.71 25.39 8.16 179.05 1.46 26.86 16 11 O -0.59 -21.30 12.51 -3.97 -0.05 -21.35 16 12 N -0.61 -21.10 2.97 -836.07 -2.48 -23.58 16 13 C 0.12 3.50 6.47 86.51 0.56 4.06 16 14 C -0.13 -3.56 6.10 30.82 0.19 -3.37 16 15 C -0.11 -3.68 5.10 30.62 0.16 -3.52 16 16 C 0.04 1.58 2.25 -11.47 -0.03 1.56 16 17 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 18 C -0.53 -25.85 8.56 25.60 0.22 -25.63 16 19 H 0.06 2.85 7.74 -2.91 -0.02 2.83 16 20 C 0.02 1.07 5.30 84.66 0.45 1.52 16 21 N -0.91 -47.30 11.39 21.45 0.24 -47.05 16 22 Si 0.95 40.41 29.54 68.60 2.03 42.44 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 C 0.12 4.68 5.35 86.36 0.46 5.14 16 27 N -0.30 -10.79 11.54 -54.99 -0.63 -11.43 16 28 N -0.17 -5.65 11.30 -48.54 -0.55 -6.20 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.19 3.50 7.71 -2.91 -0.02 3.48 16 33 H 0.20 5.58 5.28 -4.37 -0.02 5.56 16 34 H 0.43 16.17 6.31 -92.71 -0.59 15.59 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.09 2.54 7.00 -2.38 -0.02 2.52 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 42 H 0.09 3.86 3.76 -2.38 -0.01 3.85 16 43 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -59.58 358.85 4.01 -55.57 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.48 Total: 27.51 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 6.95 Total: 31.10 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -5.13 Total: -113.25 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -0.31 Total: -43.37 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -59.58 4.01 -55.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596892172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.896 kcal (2) G-P(sol) polarization free energy of solvation -59.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds