Wall clock time and date at job start Tue Mar 31 2020 18:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48504 * 109.46917 * 269.99837 * 3 2 1 5 5 H 1.48506 * 109.47282 * 29.99382 * 3 2 1 6 6 H 1.48498 * 109.47590 * 149.99589 * 3 2 1 7 7 C 1.37879 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47324 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47291 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47149 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00053 * 180.02562 * 12 11 10 14 14 O 1.21351 * 119.99952 * 359.97438 * 13 12 11 15 15 C 1.49454 * 119.99903 * 180.02562 * 13 12 11 16 16 O 1.21351 * 120.00145 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99903 * 180.02562 * 15 13 12 18 18 C 1.47069 * 136.05946 * 0.04255 * 17 15 13 19 19 C 1.53490 * 87.98738 * 152.84638 * 18 17 15 20 20 C 1.47063 * 136.05811 * 180.02562 * 17 15 13 21 21 H 1.08998 * 113.47368 * 92.31108 * 20 17 15 22 22 C 1.50706 * 113.46527 * 321.92991 * 20 17 15 23 23 C 1.38249 * 119.97326 * 339.77998 * 22 20 17 24 24 C 1.38194 * 120.02362 * 180.23554 * 23 22 20 25 25 C 1.38460 * 119.97497 * 359.48860 * 24 23 22 26 26 F 1.35104 * 120.02799 * 180.23537 * 25 24 23 27 27 C 1.38467 * 119.94915 * 0.26132 * 25 24 23 28 28 C 1.38197 * 119.97169 * 359.97438 * 27 25 24 29 29 H 0.97002 * 120.00086 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47261 * 60.00225 * 9 7 2 31 31 H 1.09001 * 109.47595 * 299.99868 * 9 7 2 32 32 H 1.09004 * 109.46668 * 59.99985 * 10 9 7 33 33 H 1.09001 * 109.46777 * 300.00492 * 10 9 7 34 34 H 1.09004 * 109.47224 * 60.00390 * 11 10 9 35 35 H 1.08994 * 109.47428 * 300.00315 * 11 10 9 36 36 H 0.96999 * 120.00156 * 0.02562 * 12 11 10 37 37 H 1.09001 * 113.46585 * 267.63155 * 18 17 15 38 38 H 1.09001 * 113.46486 * 38.06181 * 18 17 15 39 39 H 1.09001 * 114.21090 * 272.48549 * 19 18 17 40 40 H 1.09005 * 114.20638 * 139.65184 * 19 18 17 41 41 H 1.07998 * 119.98556 * 359.97438 * 23 22 20 42 42 H 1.08002 * 120.01531 * 179.77412 * 24 23 22 43 43 H 1.07998 * 120.01335 * 180.02562 * 27 25 24 44 44 H 1.08004 * 119.98594 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9831 -7.3713 0.0005 14 8 0.7900 -7.5930 0.0013 15 6 2.9543 -8.5072 0.0004 16 8 4.1474 -8.2855 0.0000 17 7 2.5050 -9.7779 -0.0002 18 6 1.1899 -10.4362 -0.0017 19 6 1.8497 -11.6325 -0.7012 20 6 3.1142 -11.1164 0.0000 21 1 3.2566 -11.5285 0.9989 22 6 4.3541 -11.2116 -0.8515 23 6 4.5841 -10.2767 -1.8436 24 6 5.7182 -10.3658 -2.6282 25 6 6.6296 -11.3858 -2.4134 26 9 7.7410 -11.4711 -3.1767 27 6 6.4007 -12.3186 -1.4161 28 6 5.2634 -12.2303 -0.6359 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 2.8719 -3.6043 0.8906 33 1 2.8720 -3.6043 -0.8894 34 1 0.8534 -5.0451 -0.8886 35 1 0.8539 -5.0446 0.8913 36 1 3.3860 -5.9234 0.0002 37 1 0.8192 -10.6675 0.9969 38 1 0.4501 -9.9264 -0.6189 39 1 1.8779 -11.5550 -1.7881 40 1 1.5062 -12.6037 -0.3450 41 1 3.8751 -9.4788 -2.0082 42 1 5.8959 -9.6374 -3.4056 43 1 7.1111 -13.1144 -1.2474 44 1 5.0845 -12.9581 0.1418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597255859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:56 Heat of formation + Delta-G solvation = -55.063234 kcal Electronic energy + Delta-G solvation = -27432.241658 eV Core-core repulsion = 23265.365809 eV Total energy + Delta-G solvation = -4166.875849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.17907 -41.44377 -39.75981 -38.55274 -37.85665 -35.61191 -33.37331 -31.66854 -31.39978 -31.26309 -30.20610 -27.23356 -26.05020 -24.70683 -23.46633 -22.96065 -22.28410 -21.21092 -20.70824 -19.31133 -18.19242 -17.91071 -17.22645 -17.02797 -16.42934 -16.31304 -15.89720 -15.82591 -15.47201 -15.02579 -14.68241 -14.45490 -14.41840 -13.90290 -13.86694 -13.75226 -13.56075 -13.43464 -13.05228 -12.80928 -12.32795 -12.30695 -12.01673 -11.91004 -11.82058 -11.64822 -11.35391 -11.09000 -10.92583 -10.78158 -10.61589 -9.92424 -9.77043 -9.45310 -9.36833 -9.24913 -9.15101 -9.00426 -8.84906 -8.39484 -6.04262 -4.07266 0.71795 0.91337 1.38064 2.03884 3.13562 3.19184 3.30099 3.36444 3.38614 3.40975 3.87189 3.93240 4.18229 4.32711 4.35639 4.43596 4.50378 4.57795 4.74098 4.87169 4.91718 4.99110 5.17767 5.24411 5.31756 5.43964 5.54477 5.56643 5.59394 5.66127 5.67723 5.77609 5.88885 6.05075 6.12851 6.24237 6.51471 6.52637 6.68528 6.92821 7.11615 7.24114 7.59724 7.65884 7.71184 7.93961 8.02977 8.35233 8.99178 9.57160 11.06992 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.002071 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.084073 B =13513.884821 C =14962.354048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.692 5.692 13 C 0.503 3.497 14 O -0.522 6.522 15 C 0.532 3.468 16 O -0.511 6.511 17 N -0.621 5.621 18 C 0.106 3.894 19 C -0.147 4.147 20 C 0.176 3.824 21 H 0.110 0.890 22 C -0.107 4.107 23 C -0.049 4.049 24 C -0.152 4.152 25 C 0.101 3.899 26 F -0.141 7.141 27 C -0.158 4.158 28 C -0.077 4.077 29 H 0.261 0.739 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.411 0.589 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.925 -30.568 -1.692 31.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.007 4.007 12 N -0.344 5.344 13 C 0.283 3.717 14 O -0.398 6.398 15 C 0.317 3.683 16 O -0.386 6.386 17 N -0.358 5.358 18 C -0.017 4.017 19 C -0.184 4.184 20 C 0.074 3.926 21 H 0.127 0.873 22 C -0.108 4.108 23 C -0.068 4.068 24 C -0.171 4.171 25 C 0.082 3.918 26 F -0.119 7.119 27 C -0.177 4.177 28 C -0.096 4.096 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.246 0.754 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.144 0.856 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.665 -30.199 -1.708 30.973 hybrid contribution 1.158 1.198 -0.027 1.666 sum 7.823 -29.001 -1.736 30.088 Atomic orbital electron populations 1.69961 1.06055 1.26728 1.50549 1.25028 0.94875 0.99339 0.95229 0.86570 0.79816 0.83344 0.78125 1.20635 1.21197 1.19867 1.21194 0.93051 0.90873 1.50976 0.92579 1.19031 0.93785 0.90781 0.97702 1.21929 0.99884 0.92944 1.01313 1.21838 0.91695 0.84669 1.02490 1.46081 1.12233 1.04895 1.71197 1.19905 0.88387 0.84247 0.79166 1.90738 1.15943 1.84592 1.48565 1.19997 0.88537 0.82285 0.77518 1.90809 1.16099 1.83640 1.48038 1.49503 1.11435 1.03179 1.71670 1.23074 0.86896 0.90050 1.01656 1.23594 0.94341 0.98974 1.01537 1.21705 0.91650 0.80707 0.98586 0.87262 1.19820 0.96642 0.96719 0.97638 1.20787 0.96233 0.96949 0.92785 1.21152 0.94963 0.98734 1.02268 1.17765 0.84409 0.97260 0.92376 1.91505 1.50326 1.95981 1.74118 1.21067 0.99634 1.00169 0.96779 1.20744 0.92447 0.97682 0.98679 0.92910 0.96211 0.96194 0.92442 0.92431 0.91112 0.91119 0.75350 0.88991 0.88555 0.88235 0.88332 0.85630 0.84659 0.84643 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.11 1.95 5.67 -4.04 -0.02 1.93 16 12 N -0.69 -10.31 5.55 -60.73 -0.34 -10.65 16 13 C 0.50 7.45 7.89 -11.58 -0.09 7.35 16 14 O -0.52 -8.58 15.20 5.50 0.08 -8.50 16 15 C 0.53 7.00 6.76 -11.58 -0.08 6.92 16 16 O -0.51 -7.60 15.06 5.50 0.08 -7.52 16 17 N -0.62 -6.22 3.14 -179.32 -0.56 -6.78 16 18 C 0.11 0.75 7.61 -8.52 -0.06 0.69 16 19 C -0.15 -0.69 8.02 -26.21 -0.21 -0.90 16 20 C 0.18 1.25 4.26 -73.54 -0.31 0.93 16 21 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 22 C -0.11 -0.92 5.10 -104.61 -0.53 -1.45 16 23 C -0.05 -0.51 7.85 -39.59 -0.31 -0.82 16 24 C -0.15 -1.55 10.03 -39.52 -0.40 -1.95 16 25 C 0.10 1.00 7.30 -39.42 -0.29 0.72 16 26 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 27 C -0.16 -1.26 10.03 -39.51 -0.40 -1.65 16 28 C -0.08 -0.54 9.73 -39.59 -0.39 -0.93 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.41 5.64 7.94 -40.82 -0.32 5.32 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.80 7.39 -51.93 -0.38 0.42 16 39 H 0.10 0.51 8.11 -51.93 -0.42 0.09 16 40 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.13 1.42 6.01 -52.49 -0.32 1.11 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -33.20 378.39 -9.12 -42.32 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.06 Total: 0.82 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.78 Total: -4.52 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.16 Total: -43.30 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.17 Total: -16.02 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.20 -9.12 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597255859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.744 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds