Wall clock time and date at job start Tue Mar 31 2020 18:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48504 * 109.46917 * 269.99837 * 3 2 1 5 5 H 1.48506 * 109.47282 * 29.99382 * 3 2 1 6 6 H 1.48498 * 109.47590 * 149.99589 * 3 2 1 7 7 C 1.37879 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47324 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47291 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47149 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00053 * 180.02562 * 12 11 10 14 14 O 1.21351 * 119.99952 * 359.97438 * 13 12 11 15 15 C 1.49454 * 119.99903 * 180.02562 * 13 12 11 16 16 O 1.21351 * 120.00145 * 359.97438 * 15 13 12 17 17 N 1.34775 * 119.99903 * 180.02562 * 15 13 12 18 18 C 1.47069 * 136.05946 * 0.04255 * 17 15 13 19 19 C 1.53490 * 87.98738 * 152.84638 * 18 17 15 20 20 C 1.47063 * 136.05811 * 180.02562 * 17 15 13 21 21 H 1.08998 * 113.47368 * 92.31108 * 20 17 15 22 22 C 1.50706 * 113.46527 * 321.92991 * 20 17 15 23 23 C 1.38249 * 119.97326 * 339.77998 * 22 20 17 24 24 C 1.38194 * 120.02362 * 180.23554 * 23 22 20 25 25 C 1.38460 * 119.97497 * 359.48860 * 24 23 22 26 26 F 1.35104 * 120.02799 * 180.23537 * 25 24 23 27 27 C 1.38467 * 119.94915 * 0.26132 * 25 24 23 28 28 C 1.38197 * 119.97169 * 359.97438 * 27 25 24 29 29 H 0.97002 * 120.00086 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47261 * 60.00225 * 9 7 2 31 31 H 1.09001 * 109.47595 * 299.99868 * 9 7 2 32 32 H 1.09004 * 109.46668 * 59.99985 * 10 9 7 33 33 H 1.09001 * 109.46777 * 300.00492 * 10 9 7 34 34 H 1.09004 * 109.47224 * 60.00390 * 11 10 9 35 35 H 1.08994 * 109.47428 * 300.00315 * 11 10 9 36 36 H 0.96999 * 120.00156 * 0.02562 * 12 11 10 37 37 H 1.09001 * 113.46585 * 267.63155 * 18 17 15 38 38 H 1.09001 * 113.46486 * 38.06181 * 18 17 15 39 39 H 1.09001 * 114.21090 * 272.48549 * 19 18 17 40 40 H 1.09005 * 114.20638 * 139.65184 * 19 18 17 41 41 H 1.07998 * 119.98556 * 359.97438 * 23 22 20 42 42 H 1.08002 * 120.01531 * 179.77412 * 24 23 22 43 43 H 1.07998 * 120.01335 * 180.02562 * 27 25 24 44 44 H 1.08004 * 119.98594 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9831 -7.3713 0.0005 14 8 0.7900 -7.5930 0.0013 15 6 2.9543 -8.5072 0.0004 16 8 4.1474 -8.2855 0.0000 17 7 2.5050 -9.7779 -0.0002 18 6 1.1899 -10.4362 -0.0017 19 6 1.8497 -11.6325 -0.7012 20 6 3.1142 -11.1164 0.0000 21 1 3.2566 -11.5285 0.9989 22 6 4.3541 -11.2116 -0.8515 23 6 4.5841 -10.2767 -1.8436 24 6 5.7182 -10.3658 -2.6282 25 6 6.6296 -11.3858 -2.4134 26 9 7.7410 -11.4711 -3.1767 27 6 6.4007 -12.3186 -1.4161 28 6 5.2634 -12.2303 -0.6359 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 2.8719 -3.6043 0.8906 33 1 2.8720 -3.6043 -0.8894 34 1 0.8534 -5.0451 -0.8886 35 1 0.8539 -5.0446 0.8913 36 1 3.3860 -5.9234 0.0002 37 1 0.8192 -10.6675 0.9969 38 1 0.4501 -9.9264 -0.6189 39 1 1.8779 -11.5550 -1.7881 40 1 1.5062 -12.6037 -0.3450 41 1 3.8751 -9.4788 -2.0082 42 1 5.8959 -9.6374 -3.4056 43 1 7.1111 -13.1144 -1.2474 44 1 5.0845 -12.9581 0.1418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597255859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:56 Heat of formation + Delta-G solvation = -75.830251 kcal Electronic energy + Delta-G solvation = -27433.142184 eV Core-core repulsion = 23265.365809 eV Total energy + Delta-G solvation = -4167.776375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.94048 -42.23754 -40.77271 -39.33628 -38.77905 -37.10696 -35.25672 -33.07322 -32.35439 -32.04382 -30.93733 -28.95023 -26.74886 -26.03239 -24.37402 -24.10686 -22.96067 -22.39772 -22.11616 -20.29295 -19.05267 -18.73456 -18.49987 -18.15877 -17.71989 -17.18552 -16.98436 -16.67276 -16.62669 -16.40730 -16.06588 -15.73592 -15.41280 -14.78993 -14.70525 -14.44725 -14.36054 -14.29140 -14.22498 -13.80128 -13.74151 -13.55429 -13.44538 -12.92153 -12.81134 -12.77513 -12.57682 -12.42653 -12.37471 -12.00483 -11.73012 -11.71671 -11.56446 -11.25111 -10.60676 -10.56471 -10.33660 -10.10002 -9.96818 -9.53017 -8.21132 -6.32050 0.04412 0.25177 0.31539 1.12029 1.40803 1.41599 1.52753 2.08604 2.30689 2.41425 2.60918 3.12665 3.22983 3.25986 3.40818 3.60203 3.71741 3.91497 4.01226 4.05224 4.14661 4.25374 4.28150 4.33355 4.41742 4.49299 4.61527 4.76535 4.85303 4.88366 4.90852 4.96927 5.00747 5.11874 5.13695 5.20185 5.21292 5.25494 5.48647 5.49613 5.68180 5.82357 5.87936 6.03927 6.21803 6.33658 6.60808 6.84548 6.89883 7.37242 8.90744 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.002071 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.084073 B =13513.884821 C =14962.354048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.106 4.106 11 C 0.130 3.870 12 N -0.690 5.690 13 C 0.502 3.498 14 O -0.541 6.541 15 C 0.532 3.468 16 O -0.537 6.537 17 N -0.623 5.623 18 C 0.097 3.903 19 C -0.123 4.123 20 C 0.172 3.828 21 H 0.141 0.859 22 C -0.112 4.112 23 C -0.068 4.068 24 C -0.170 4.170 25 C 0.079 3.921 26 F -0.151 7.151 27 C -0.154 4.154 28 C -0.067 4.067 29 H 0.264 0.736 30 H -0.004 1.004 31 H -0.003 1.003 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.417 0.583 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.140 0.860 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.159 0.841 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -32.981 -0.569 33.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.144 4.144 11 C 0.007 3.993 12 N -0.342 5.342 13 C 0.282 3.718 14 O -0.419 6.419 15 C 0.316 3.684 16 O -0.414 6.414 17 N -0.358 5.358 18 C -0.024 4.024 19 C -0.160 4.160 20 C 0.071 3.929 21 H 0.158 0.842 22 C -0.112 4.112 23 C -0.086 4.086 24 C -0.189 4.189 25 C 0.060 3.940 26 F -0.129 7.129 27 C -0.173 4.173 28 C -0.085 4.085 29 H 0.073 0.927 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.254 0.746 37 H 0.132 0.868 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.158 0.842 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.177 0.823 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.617 -32.664 -0.591 33.546 hybrid contribution 0.792 1.854 -0.383 2.052 sum 8.409 -30.810 -0.974 31.952 Atomic orbital electron populations 1.70093 1.07769 1.27811 1.51572 1.25981 0.95780 1.03398 0.94781 0.85443 0.78658 0.78462 0.78450 1.19846 1.20839 1.18723 1.21662 0.93657 0.92145 1.50598 0.91893 1.18927 0.94307 0.92526 0.95444 1.21638 0.98643 0.91995 1.02089 1.21449 0.91516 0.84456 1.01903 1.45907 1.12167 1.04696 1.71423 1.20343 0.88597 0.84594 0.78220 1.90720 1.16895 1.84957 1.49337 1.19528 0.87634 0.82981 0.78261 1.90793 1.16574 1.84142 1.49907 1.49757 1.13578 1.03052 1.69460 1.23369 0.85595 0.90452 1.03007 1.23556 0.91866 0.99674 1.00912 1.22172 0.91785 0.78785 1.00203 0.84167 1.20079 0.97604 0.96542 0.97012 1.20738 0.96193 0.97559 0.94144 1.21204 0.95590 0.99322 1.02744 1.18016 0.84339 0.98180 0.93441 1.91473 1.50791 1.96099 1.74586 1.21420 1.00354 0.99852 0.95673 1.21158 0.91078 0.97510 0.98739 0.92749 0.98524 0.98460 0.91585 0.91614 0.91813 0.91742 0.74566 0.86829 0.90296 0.88917 0.84223 0.87462 0.85165 0.82311 0.80785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.11 -4.13 5.27 30.59 0.16 -3.97 16 11 C 0.13 4.49 5.67 86.38 0.49 4.98 16 12 N -0.69 -20.77 5.55 -464.42 -2.58 -23.34 16 13 C 0.50 14.99 7.89 87.27 0.69 15.68 16 14 O -0.54 -17.98 15.20 -3.25 -0.05 -18.03 16 15 C 0.53 13.90 6.76 87.27 0.59 14.49 16 16 O -0.54 -16.05 15.06 -3.25 -0.05 -16.10 16 17 N -0.62 -11.56 3.14 -839.61 -2.64 -14.20 16 18 C 0.10 1.17 7.61 83.17 0.63 1.80 16 19 C -0.12 -0.72 8.02 30.93 0.25 -0.48 16 20 C 0.17 1.87 4.26 41.05 0.17 2.04 16 21 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 22 C -0.11 -1.66 5.10 -19.86 -0.10 -1.76 16 23 C -0.07 -1.40 7.85 22.26 0.17 -1.23 16 24 C -0.17 -3.59 10.03 22.31 0.22 -3.37 16 25 C 0.08 1.55 7.30 22.38 0.16 1.71 16 26 F -0.15 -3.25 17.27 44.97 0.78 -2.48 16 27 C -0.15 -2.10 10.03 22.31 0.22 -1.87 16 28 C -0.07 -0.71 9.73 22.26 0.22 -0.49 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.42 11.52 7.94 -92.71 -0.74 10.78 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.26 7.39 -2.39 -0.02 1.24 16 39 H 0.09 0.74 8.11 -2.39 -0.02 0.72 16 40 H 0.14 -0.20 8.14 -2.38 -0.02 -0.22 16 41 H 0.11 2.56 6.01 -2.91 -0.02 2.54 16 42 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 43 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 44 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 Total: -1.00 -74.32 378.39 2.80 -71.52 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.29 Total: 13.62 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 4.73 Total: -0.84 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -4.93 Total: -93.84 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.10 Total: -34.13 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -74.32 2.80 -71.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597255859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.306 kcal (2) G-P(sol) polarization free energy of solvation -74.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds