Wall clock time and date at job start Tue Mar 31 2020 18:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00507 * 2 1 4 4 H 1.48501 * 109.47392 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47032 * 300.00160 * 3 2 1 6 6 H 1.48500 * 109.47033 * 60.00203 * 3 2 1 7 7 C 1.37883 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00437 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47086 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46842 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46731 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99697 * 180.02562 * 12 11 10 14 14 O 1.21344 * 120.00022 * 359.97438 * 13 12 11 15 15 C 1.49454 * 120.00022 * 180.02562 * 13 12 11 16 16 O 1.21350 * 119.99644 * 359.97438 * 15 13 12 17 17 N 1.34770 * 120.00125 * 179.97438 * 15 13 12 18 18 C 1.47068 * 136.05888 * 359.94991 * 17 15 13 19 19 C 1.53613 * 88.00442 * 207.10413 * 18 17 15 20 20 C 1.47068 * 136.05347 * 179.97438 * 17 15 13 21 21 H 1.08999 * 113.46659 * 267.68198 * 20 17 15 22 22 C 1.50696 * 113.46931 * 38.06936 * 20 17 15 23 23 C 1.38248 * 119.97128 * 199.58453 * 22 20 17 24 24 C 1.38196 * 120.02483 * 179.97438 * 23 22 20 25 25 C 1.38458 * 119.97492 * 0.02562 * 24 23 22 26 26 F 1.35104 * 120.02786 * 179.97438 * 25 24 23 27 27 C 1.38465 * 119.94675 * 0.24873 * 25 24 23 28 28 C 1.38196 * 119.97501 * 359.51590 * 27 25 24 29 29 H 0.97006 * 119.99535 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47055 * 59.99739 * 9 7 2 31 31 H 1.09004 * 109.47425 * 299.99856 * 9 7 2 32 32 H 1.08998 * 109.47422 * 59.99920 * 10 9 7 33 33 H 1.09001 * 109.47095 * 299.99266 * 10 9 7 34 34 H 1.09001 * 109.47301 * 60.00313 * 11 10 9 35 35 H 1.08996 * 109.47432 * 299.99939 * 11 10 9 36 36 H 0.96996 * 120.00489 * 359.97438 * 12 11 10 37 37 H 1.08994 * 113.46512 * 321.93860 * 18 17 15 38 38 H 1.09000 * 113.46721 * 92.31350 * 18 17 15 39 39 H 1.09004 * 114.23475 * 220.40964 * 19 18 17 40 40 H 1.08997 * 114.20303 * 87.55040 * 19 18 17 41 41 H 1.08002 * 119.98915 * 359.97438 * 23 22 20 42 42 H 1.07995 * 120.01604 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.01064 * 179.75151 * 27 25 24 44 44 H 1.07993 * 119.98761 * 180.20627 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4800 -4.9871 -0.0020 12 7 2.4320 -6.1007 -0.0024 13 6 1.9826 -7.3714 -0.0034 14 8 0.7896 -7.5930 -0.0035 15 6 2.9537 -8.5074 -0.0032 16 8 4.1468 -8.2857 -0.0026 17 7 2.5044 -9.7780 -0.0037 18 6 1.1892 -10.4362 -0.0036 19 6 1.8489 -11.6347 0.6950 20 6 3.1137 -11.1166 -0.0042 21 1 3.2567 -11.5280 -1.0034 22 6 4.3527 -11.2123 0.8482 23 6 5.2526 -12.2420 0.6453 24 6 6.3895 -12.3306 1.4260 25 6 6.6268 -11.3879 2.4120 26 9 7.7377 -11.4738 3.1761 27 6 5.7219 -10.3603 2.6180 28 6 4.5882 -10.2710 1.8328 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5562 -0.8919 31 1 0.6239 -2.5575 0.8880 32 1 2.8711 -3.6049 0.8890 33 1 2.8724 -3.6041 -0.8910 34 1 0.8537 -5.0447 -0.8923 35 1 0.8530 -5.0450 0.8877 36 1 3.3856 -5.9236 -0.0026 37 1 0.4491 -9.9267 0.6133 38 1 0.8188 -10.6660 -1.0026 39 1 1.5063 -12.6055 0.3368 40 1 1.8760 -11.5590 1.7820 41 1 5.0671 -12.9775 -0.1235 42 1 7.0926 -13.1348 1.2672 43 1 5.9040 -9.6267 3.3895 44 1 3.8839 -9.4677 1.9911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597255860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:00 Heat of formation + Delta-G solvation = -55.028682 kcal Electronic energy + Delta-G solvation = -27432.891219 eV Core-core repulsion = 23266.016868 eV Total energy + Delta-G solvation = -4166.874351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.17829 -41.44339 -39.75962 -38.55056 -37.85840 -35.61271 -33.37459 -31.66964 -31.39970 -31.26363 -30.20455 -27.23443 -26.04918 -24.71030 -23.46219 -22.96409 -22.28545 -21.21186 -20.70958 -19.31224 -18.19525 -17.90975 -17.22843 -17.02687 -16.43132 -16.31543 -15.89879 -15.82708 -15.47371 -15.02825 -14.68207 -14.45134 -14.41639 -13.90253 -13.86908 -13.75293 -13.55682 -13.43069 -13.05658 -12.80818 -12.33679 -12.30651 -12.01903 -11.90645 -11.82183 -11.64959 -11.35142 -11.08990 -10.94384 -10.78411 -10.59232 -9.92891 -9.77279 -9.45416 -9.36828 -9.24893 -9.13814 -9.00497 -8.84865 -8.39985 -6.04558 -4.07432 0.71973 0.91395 1.37908 2.03689 3.13454 3.19225 3.29041 3.36598 3.38955 3.41479 3.86888 3.93280 4.18256 4.32732 4.35558 4.43515 4.50349 4.57803 4.73999 4.87093 4.91764 4.99138 5.17726 5.24424 5.31599 5.43965 5.54587 5.56555 5.59448 5.66092 5.67653 5.77665 5.89051 6.05024 6.12927 6.24174 6.51417 6.52702 6.68487 6.92750 7.11505 7.23971 7.59843 7.65761 7.71064 7.93851 8.02878 8.35124 8.99255 9.57063 11.06746 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002071 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.227423 B =13515.990724 C =14965.806482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.692 5.692 13 C 0.503 3.497 14 O -0.522 6.522 15 C 0.532 3.468 16 O -0.511 6.511 17 N -0.621 5.621 18 C 0.106 3.894 19 C -0.147 4.147 20 C 0.176 3.824 21 H 0.110 0.890 22 C -0.107 4.107 23 C -0.077 4.077 24 C -0.158 4.158 25 C 0.101 3.899 26 F -0.141 7.141 27 C -0.152 4.152 28 C -0.049 4.049 29 H 0.261 0.739 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.411 0.589 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -30.583 1.685 31.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.007 4.007 12 N -0.344 5.344 13 C 0.283 3.717 14 O -0.398 6.398 15 C 0.317 3.683 16 O -0.386 6.386 17 N -0.358 5.358 18 C -0.017 4.017 19 C -0.184 4.184 20 C 0.074 3.926 21 H 0.127 0.873 22 C -0.108 4.108 23 C -0.096 4.096 24 C -0.177 4.177 25 C 0.082 3.918 26 F -0.119 7.119 27 C -0.171 4.171 28 C -0.068 4.068 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.668 -30.216 1.708 30.990 hybrid contribution 1.145 1.201 0.015 1.660 sum 7.814 -29.015 1.723 30.098 Atomic orbital electron populations 1.69974 1.06058 1.26612 1.50647 1.25031 0.94876 0.99356 0.95241 0.86516 0.80088 0.83672 0.77605 1.19726 1.20989 1.20981 1.21235 0.93087 0.90858 1.50836 0.92523 1.19037 0.93793 0.90801 0.97709 1.21930 0.99879 0.92940 1.01315 1.21841 0.91696 0.84669 1.02490 1.46082 1.12233 1.04894 1.71201 1.19903 0.88384 0.84247 0.79167 1.90736 1.15945 1.84591 1.48559 1.19994 0.88539 0.82283 0.77521 1.90809 1.16097 1.83640 1.48043 1.49492 1.11443 1.03184 1.71659 1.23093 0.86884 0.90031 1.01670 1.23613 0.94333 0.98947 1.01551 1.21701 0.91650 0.80700 0.98597 0.87260 1.19818 0.96700 0.96608 0.97703 1.20740 0.92519 0.97641 0.98667 1.21064 0.99604 1.00050 0.96936 1.17764 0.84448 0.97171 0.92436 1.91505 1.50373 1.96021 1.74032 1.21156 0.95011 0.98688 1.02262 1.20793 0.96202 0.97001 0.92758 0.92968 0.96194 0.96199 0.92434 0.92436 0.91130 0.91100 0.75349 0.88553 0.88994 0.88321 0.88237 0.84809 0.84645 0.84659 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.11 1.95 5.67 -4.04 -0.02 1.93 16 12 N -0.69 -10.31 5.55 -60.73 -0.34 -10.64 16 13 C 0.50 7.44 7.89 -11.58 -0.09 7.35 16 14 O -0.52 -8.57 15.20 5.50 0.08 -8.49 16 15 C 0.53 6.99 6.75 -11.59 -0.08 6.91 16 16 O -0.51 -7.60 15.02 5.50 0.08 -7.52 16 17 N -0.62 -6.22 3.15 -179.08 -0.56 -6.78 16 18 C 0.11 0.75 7.62 -8.43 -0.06 0.69 16 19 C -0.15 -0.69 8.02 -26.14 -0.21 -0.90 16 20 C 0.18 1.25 4.25 -73.52 -0.31 0.93 16 21 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 22 C -0.11 -0.92 5.11 -104.62 -0.53 -1.45 16 23 C -0.08 -0.54 9.73 -39.59 -0.39 -0.93 16 24 C -0.16 -1.26 10.03 -39.52 -0.40 -1.65 16 25 C 0.10 1.00 7.30 -39.42 -0.29 0.71 16 26 F -0.14 -1.51 17.27 2.25 0.04 -1.47 16 27 C -0.15 -1.55 10.03 -39.51 -0.40 -1.95 16 28 C -0.05 -0.51 7.84 -39.59 -0.31 -0.82 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.41 5.64 7.94 -40.82 -0.32 5.31 16 37 H 0.10 0.80 7.39 -51.93 -0.38 0.42 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.10 0.51 8.11 -51.93 -0.42 0.09 16 41 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 44 H 0.13 1.43 5.95 -52.49 -0.31 1.12 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -33.22 378.29 -9.12 -42.33 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.06 Total: 0.80 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.78 Total: -4.53 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.16 Total: -43.28 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.17 Total: -16.01 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.22 -9.12 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597255860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.694 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds