Wall clock time and date at job start Tue Mar 31 2020 18:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00507 * 2 1 4 4 H 1.48501 * 109.47392 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47032 * 300.00160 * 3 2 1 6 6 H 1.48500 * 109.47033 * 60.00203 * 3 2 1 7 7 C 1.37883 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00437 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47086 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46842 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46731 * 179.97438 * 11 10 9 13 13 C 1.34779 * 119.99697 * 180.02562 * 12 11 10 14 14 O 1.21344 * 120.00022 * 359.97438 * 13 12 11 15 15 C 1.49454 * 120.00022 * 180.02562 * 13 12 11 16 16 O 1.21350 * 119.99644 * 359.97438 * 15 13 12 17 17 N 1.34770 * 120.00125 * 179.97438 * 15 13 12 18 18 C 1.47068 * 136.05888 * 359.94991 * 17 15 13 19 19 C 1.53613 * 88.00442 * 207.10413 * 18 17 15 20 20 C 1.47068 * 136.05347 * 179.97438 * 17 15 13 21 21 H 1.08999 * 113.46659 * 267.68198 * 20 17 15 22 22 C 1.50696 * 113.46931 * 38.06936 * 20 17 15 23 23 C 1.38248 * 119.97128 * 199.58453 * 22 20 17 24 24 C 1.38196 * 120.02483 * 179.97438 * 23 22 20 25 25 C 1.38458 * 119.97492 * 0.02562 * 24 23 22 26 26 F 1.35104 * 120.02786 * 179.97438 * 25 24 23 27 27 C 1.38465 * 119.94675 * 0.24873 * 25 24 23 28 28 C 1.38196 * 119.97501 * 359.51590 * 27 25 24 29 29 H 0.97006 * 119.99535 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47055 * 59.99739 * 9 7 2 31 31 H 1.09004 * 109.47425 * 299.99856 * 9 7 2 32 32 H 1.08998 * 109.47422 * 59.99920 * 10 9 7 33 33 H 1.09001 * 109.47095 * 299.99266 * 10 9 7 34 34 H 1.09001 * 109.47301 * 60.00313 * 11 10 9 35 35 H 1.08996 * 109.47432 * 299.99939 * 11 10 9 36 36 H 0.96996 * 120.00489 * 359.97438 * 12 11 10 37 37 H 1.08994 * 113.46512 * 321.93860 * 18 17 15 38 38 H 1.09000 * 113.46721 * 92.31350 * 18 17 15 39 39 H 1.09004 * 114.23475 * 220.40964 * 19 18 17 40 40 H 1.08997 * 114.20303 * 87.55040 * 19 18 17 41 41 H 1.08002 * 119.98915 * 359.97438 * 23 22 20 42 42 H 1.07995 * 120.01604 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.01064 * 179.75151 * 27 25 24 44 44 H 1.07993 * 119.98761 * 180.20627 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4800 -4.9871 -0.0020 12 7 2.4320 -6.1007 -0.0024 13 6 1.9826 -7.3714 -0.0034 14 8 0.7896 -7.5930 -0.0035 15 6 2.9537 -8.5074 -0.0032 16 8 4.1468 -8.2857 -0.0026 17 7 2.5044 -9.7780 -0.0037 18 6 1.1892 -10.4362 -0.0036 19 6 1.8489 -11.6347 0.6950 20 6 3.1137 -11.1166 -0.0042 21 1 3.2567 -11.5280 -1.0034 22 6 4.3527 -11.2123 0.8482 23 6 5.2526 -12.2420 0.6453 24 6 6.3895 -12.3306 1.4260 25 6 6.6268 -11.3879 2.4120 26 9 7.7377 -11.4738 3.1761 27 6 5.7219 -10.3603 2.6180 28 6 4.5882 -10.2710 1.8328 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5562 -0.8919 31 1 0.6239 -2.5575 0.8880 32 1 2.8711 -3.6049 0.8890 33 1 2.8724 -3.6041 -0.8910 34 1 0.8537 -5.0447 -0.8923 35 1 0.8530 -5.0450 0.8877 36 1 3.3856 -5.9236 -0.0026 37 1 0.4491 -9.9267 0.6133 38 1 0.8188 -10.6660 -1.0026 39 1 1.5063 -12.6055 0.3368 40 1 1.8760 -11.5590 1.7820 41 1 5.0671 -12.9775 -0.1235 42 1 7.0926 -13.1348 1.2672 43 1 5.9040 -9.6267 3.3895 44 1 3.8839 -9.4677 1.9911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597255860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:59 Heat of formation + Delta-G solvation = -75.820612 kcal Electronic energy + Delta-G solvation = -27433.792824 eV Core-core repulsion = 23266.016868 eV Total energy + Delta-G solvation = -4167.775957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.93999 -42.23775 -40.77179 -39.33480 -38.77899 -37.10741 -35.25793 -33.07387 -32.35604 -32.04338 -30.93503 -28.95112 -26.74724 -26.03528 -24.37720 -24.10268 -22.96314 -22.39851 -22.11674 -20.29347 -19.05503 -18.73491 -18.50289 -18.16017 -17.71911 -17.18727 -16.98526 -16.67479 -16.62579 -16.40485 -16.07038 -15.73525 -15.41090 -14.79331 -14.70611 -14.44601 -14.35433 -14.29944 -14.22096 -13.79601 -13.74572 -13.55631 -13.44522 -12.92051 -12.81351 -12.79798 -12.58121 -12.40361 -12.37096 -12.00244 -11.73499 -11.71713 -11.56918 -11.23451 -10.60711 -10.57234 -10.33688 -10.10021 -9.96742 -9.52913 -8.21425 -6.32199 0.04593 0.25130 0.31537 1.11876 1.40279 1.40830 1.53853 2.08484 2.30754 2.41317 2.60815 3.12495 3.22930 3.26020 3.40542 3.60223 3.71769 3.91489 4.01117 4.05169 4.14672 4.25432 4.28070 4.33425 4.41776 4.49301 4.61527 4.76574 4.85303 4.88344 4.90921 4.96970 5.00772 5.11851 5.13778 5.20203 5.21283 5.25552 5.48707 5.49719 5.68127 5.82355 5.87982 6.03887 6.21741 6.33568 6.60749 6.84611 6.89814 7.37145 8.90677 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.002071 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.227423 B =13515.990724 C =14965.806482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.130 3.870 12 N -0.690 5.690 13 C 0.502 3.498 14 O -0.541 6.541 15 C 0.532 3.468 16 O -0.537 6.537 17 N -0.623 5.623 18 C 0.097 3.903 19 C -0.122 4.122 20 C 0.172 3.828 21 H 0.141 0.859 22 C -0.112 4.112 23 C -0.067 4.067 24 C -0.154 4.154 25 C 0.079 3.921 26 F -0.151 7.151 27 C -0.170 4.170 28 C -0.068 4.068 29 H 0.264 0.736 30 H -0.003 1.003 31 H -0.003 1.003 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.417 0.583 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.130 0.870 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.859 -33.014 0.560 33.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.144 4.144 11 C 0.007 3.993 12 N -0.342 5.342 13 C 0.282 3.718 14 O -0.419 6.419 15 C 0.316 3.684 16 O -0.414 6.414 17 N -0.358 5.358 18 C -0.024 4.024 19 C -0.160 4.160 20 C 0.071 3.929 21 H 0.158 0.842 22 C -0.112 4.112 23 C -0.085 4.085 24 C -0.173 4.173 25 C 0.060 3.940 26 F -0.130 7.130 27 C -0.189 4.189 28 C -0.087 4.087 29 H 0.072 0.928 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.254 0.746 37 H 0.097 0.903 38 H 0.132 0.868 39 H 0.158 0.842 40 H 0.111 0.889 41 H 0.192 0.808 42 H 0.177 0.823 43 H 0.148 0.852 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.603 -32.700 0.588 33.577 hybrid contribution 0.784 1.864 0.371 2.056 sum 8.387 -30.836 0.959 31.971 Atomic orbital electron populations 1.70102 1.07770 1.27742 1.51652 1.25983 0.95783 1.03407 0.94799 0.85390 0.79085 0.78793 0.77719 1.18563 1.20444 1.20469 1.21692 0.93653 0.92135 1.50467 0.91901 1.18932 0.94313 0.92537 0.95456 1.21638 0.98640 0.91994 1.02090 1.21452 0.91516 0.84454 1.01904 1.45908 1.12166 1.04694 1.71427 1.20341 0.88595 0.84595 0.78221 1.90718 1.16896 1.84956 1.49331 1.19525 0.87637 0.82980 0.78265 1.90794 1.16572 1.84142 1.49906 1.49745 1.13587 1.03059 1.69453 1.23388 0.85581 0.90443 1.03020 1.23576 0.91843 0.99641 1.00931 1.22167 0.91787 0.78782 1.00212 0.84168 1.20078 0.97652 0.96442 0.97076 1.21155 0.91143 0.97498 0.98682 1.21418 1.00303 0.99748 0.95821 1.18016 0.84385 0.98084 0.93503 1.91473 1.50839 1.96136 1.74502 1.21207 0.95644 0.99274 1.02745 1.20743 0.96176 0.97601 0.94132 0.92753 0.98454 0.98507 0.91630 0.91568 0.91752 0.91799 0.74565 0.90298 0.86834 0.84200 0.88919 0.80762 0.82302 0.85183 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.31 4.97 29.85 0.15 1.45 16 10 C -0.11 -4.13 5.27 30.60 0.16 -3.97 16 11 C 0.13 4.49 5.67 86.38 0.49 4.98 16 12 N -0.69 -20.76 5.55 -464.40 -2.58 -23.34 16 13 C 0.50 14.99 7.89 87.27 0.69 15.68 16 14 O -0.54 -17.98 15.20 -3.23 -0.05 -18.03 16 15 C 0.53 13.90 6.75 87.27 0.59 14.49 16 16 O -0.54 -16.04 15.02 -3.25 -0.05 -16.09 16 17 N -0.62 -11.57 3.15 -838.84 -2.64 -14.21 16 18 C 0.10 1.16 7.62 83.22 0.63 1.80 16 19 C -0.12 -0.72 8.02 30.98 0.25 -0.47 16 20 C 0.17 1.87 4.25 41.06 0.17 2.04 16 21 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 22 C -0.11 -1.66 5.11 -19.86 -0.10 -1.76 16 23 C -0.07 -0.70 9.73 22.26 0.22 -0.48 16 24 C -0.15 -2.09 10.03 22.31 0.22 -1.87 16 25 C 0.08 1.55 7.30 22.38 0.16 1.71 16 26 F -0.15 -3.26 17.27 44.97 0.78 -2.48 16 27 C -0.17 -3.60 10.03 22.31 0.22 -3.38 16 28 C -0.07 -1.41 7.84 22.26 0.17 -1.24 16 29 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 30 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.42 11.52 7.94 -92.71 -0.74 10.78 16 37 H 0.08 1.26 7.39 -2.39 -0.02 1.24 16 38 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.14 -0.21 8.14 -2.38 -0.02 -0.23 16 40 H 0.09 0.73 8.11 -2.39 -0.02 0.71 16 41 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 42 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 43 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.11 2.57 5.95 -2.91 -0.02 2.55 16 Total: -1.00 -74.38 378.29 2.79 -71.59 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.29 Total: 13.51 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 4.73 Total: -0.83 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -4.93 Total: -93.84 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.10 Total: -34.12 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -74.38 2.79 -71.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597255860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.235 kcal (2) G-P(sol) polarization free energy of solvation -74.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds