Wall clock time and date at job start Tue Mar 31 2020 18:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00323 * 2 1 4 4 H 1.48496 * 109.47406 * 270.00353 * 3 2 1 5 5 H 1.48505 * 109.47232 * 30.00552 * 3 2 1 6 6 H 1.48505 * 109.46918 * 150.00175 * 3 2 1 7 7 C 1.38817 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99841 * 194.68868 * 7 2 1 9 9 N 1.36934 * 120.00158 * 14.67885 * 7 2 1 10 10 C 1.46962 * 120.59717 * 206.93209 * 9 7 2 11 11 C 1.53375 * 108.63601 * 235.20565 * 10 9 7 12 12 N 1.46962 * 108.63348 * 310.57964 * 11 10 9 13 13 C 1.34786 * 120.58687 * 235.19972 * 12 11 10 14 14 O 1.21279 * 120.00350 * 4.06321 * 13 12 11 15 15 C 1.50696 * 119.99558 * 184.05961 * 13 12 11 16 16 H 1.08996 * 109.69629 * 308.63361 * 15 13 12 17 17 C 1.53406 * 109.69675 * 69.18580 * 15 13 12 18 18 O 1.42834 * 108.37584 * 184.40747 * 17 15 13 19 19 C 1.35847 * 117.84664 * 310.74738 * 18 17 15 20 20 C 1.39104 * 118.47015 * 197.26954 * 19 18 17 21 21 C 1.38193 * 120.19595 * 180.28909 * 20 19 18 22 22 F 1.35096 * 120.04891 * 179.97438 * 21 20 19 23 23 C 1.38521 * 119.90086 * 359.71800 * 21 20 19 24 24 C 1.38073 * 119.95686 * 0.45891 * 23 21 20 25 25 C 1.38394 * 121.80140 * 17.37821 * 19 18 17 26 26 C 1.50775 * 121.39945 * 359.35761 * 25 19 18 27 27 C 1.46958 * 118.81650 * 55.47892 * 12 11 10 28 28 C 1.46968 * 120.59187 * 26.91584 * 9 7 2 29 29 H 0.97001 * 119.99915 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.60973 * 115.46554 * 10 9 7 31 31 H 1.09000 * 109.74943 * 355.03272 * 10 9 7 32 32 H 1.08995 * 109.61174 * 190.82859 * 11 10 9 33 33 H 1.09002 * 109.74626 * 70.40623 * 11 10 9 34 34 H 1.09007 * 109.68509 * 64.68790 * 17 15 13 35 35 H 1.08998 * 109.68630 * 304.13117 * 17 15 13 36 36 H 1.07996 * 119.90207 * 0.26517 * 20 19 18 37 37 H 1.08002 * 120.02490 * 180.18349 * 23 21 20 38 38 H 1.08002 * 119.82278 * 179.73991 * 24 23 21 39 39 H 1.09003 * 109.43552 * 137.94311 * 26 25 19 40 40 H 1.08996 * 109.43798 * 257.81886 * 26 25 19 41 41 H 1.08995 * 109.61122 * 64.26543 * 27 12 11 42 42 H 1.09007 * 109.61092 * 184.77923 * 27 12 11 43 43 H 1.09000 * 109.60810 * 244.53727 * 28 9 7 44 44 H 1.09004 * 109.61291 * 5.04617 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0637 -1.2177 0.2366 9 7 1.3590 -2.3686 -0.3016 10 6 1.8383 -3.6518 0.2309 11 6 2.0740 -4.6117 -0.9419 12 7 0.8831 -4.6025 -1.8029 13 6 0.2422 -5.7506 -2.0993 14 8 0.6023 -6.7936 -1.5959 15 6 -0.9220 -5.7382 -3.0561 16 1 -1.6420 -4.9798 -2.7488 17 6 -0.4226 -5.4326 -4.4740 18 8 -1.5556 -5.3256 -5.3372 19 6 -2.4854 -6.3149 -5.2893 20 6 -3.3851 -6.4309 -6.3439 21 6 -4.3495 -7.4205 -6.3291 22 9 -5.2221 -7.5302 -7.3546 23 6 -4.4169 -8.3032 -5.2636 24 6 -3.5268 -8.1868 -4.2145 25 6 -2.5573 -7.1974 -4.2257 26 6 -1.5940 -7.1135 -3.0688 27 6 0.4071 -3.3201 -2.3399 28 6 0.1680 -2.3596 -1.1626 29 1 -0.4850 0.8401 0.0004 30 1 1.0895 -4.0718 0.9024 31 1 2.7718 -3.5001 0.7728 32 1 2.2430 -5.6191 -0.5618 33 1 2.9423 -4.2866 -1.5151 34 1 0.2253 -6.2394 -4.8170 35 1 0.1293 -4.4927 -4.4743 36 1 -3.3299 -5.7453 -7.1765 37 1 -5.1679 -9.0792 -5.2514 38 1 -3.5839 -8.8735 -3.3829 39 1 -2.1355 -7.2611 -2.1345 40 1 -0.8337 -7.8875 -3.1730 41 1 1.1588 -2.9023 -3.0096 42 1 -0.5252 -3.4744 -2.8833 43 1 -0.6997 -2.6875 -0.5902 44 1 -0.0010 -1.3521 -1.5428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:06 Heat of formation + Delta-G solvation = -61.345193 kcal Electronic energy + Delta-G solvation = -28961.936737 eV Core-core repulsion = 24794.788481 eV Total energy + Delta-G solvation = -4167.148255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.14440 -41.22314 -39.61038 -37.56501 -36.97511 -34.37894 -33.98559 -31.68183 -30.74537 -30.58648 -30.01431 -27.11953 -25.92356 -24.78416 -23.57694 -23.18526 -22.78643 -21.21986 -20.00463 -18.76231 -18.56984 -17.66460 -17.17785 -16.44612 -16.22274 -15.90310 -15.62286 -15.46708 -15.25348 -14.97739 -14.77516 -14.53341 -14.04694 -13.87759 -13.75334 -13.47619 -13.38678 -13.32976 -13.21818 -13.07881 -12.43491 -11.94985 -11.78586 -11.66955 -11.46000 -11.29434 -11.11139 -10.91497 -10.88299 -10.78071 -10.55622 -10.29396 -10.09838 -9.93671 -9.53059 -9.02442 -8.68340 -8.46460 -8.38647 -6.81351 -5.91449 -3.37383 0.83748 0.99632 2.68425 2.86014 3.20816 3.29958 3.32237 3.37630 3.38510 4.09881 4.32577 4.34451 4.38131 4.41688 4.60087 4.72935 4.75581 4.91511 5.07408 5.14330 5.21763 5.27816 5.27962 5.32944 5.64958 5.65521 5.73005 5.76549 5.79597 5.83805 5.87696 5.92040 6.00688 6.07590 6.13900 6.24779 6.32294 6.43441 6.68672 6.81563 7.07848 7.11649 7.42768 7.63564 7.74803 8.28464 8.34594 9.05176 9.67049 10.22358 11.15553 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.002714 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.404844 B =10314.354640 C =11227.394697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.131 3.869 11 C 0.095 3.905 12 N -0.593 5.593 13 C 0.519 3.481 14 O -0.552 6.552 15 C -0.148 4.148 16 H 0.113 0.887 17 C 0.072 3.928 18 O -0.304 6.304 19 C 0.160 3.840 20 C -0.185 4.185 21 C 0.127 3.873 22 F -0.137 7.137 23 C -0.185 4.185 24 C -0.054 4.054 25 C -0.163 4.163 26 C -0.058 4.058 27 C 0.072 3.928 28 C 0.155 3.845 29 H 0.256 0.744 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.023 0.977 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 -14.040 -10.966 18.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.029 4.029 12 N -0.324 5.324 13 C 0.306 3.694 14 O -0.431 6.431 15 C -0.169 4.169 16 H 0.131 0.869 17 C -0.003 4.003 18 O -0.217 6.217 19 C 0.114 3.886 20 C -0.204 4.204 21 C 0.108 3.892 22 F -0.115 7.115 23 C -0.204 4.204 24 C -0.072 4.072 25 C -0.164 4.164 26 C -0.096 4.096 27 C -0.052 4.052 28 C 0.028 3.972 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.139 0.861 36 H 0.161 0.839 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.041 0.959 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.489 -14.226 -10.816 18.695 hybrid contribution 0.205 0.917 0.023 0.939 sum -5.284 -13.310 -10.793 17.932 Atomic orbital electron populations 1.69950 1.05253 1.25738 1.54053 1.25071 0.95418 0.98522 1.00709 0.86205 0.79017 0.83278 0.77749 1.21329 1.21675 1.20413 1.19251 0.92064 0.84234 1.42723 0.91304 1.44008 1.31524 1.01774 1.54146 1.21287 0.98494 0.87082 0.92707 1.22240 0.86157 1.01183 0.93318 1.48109 1.28988 1.06786 1.48548 1.20028 0.83465 0.83681 0.82261 1.90650 1.67109 1.31235 1.54115 1.21978 0.98270 1.00805 0.95875 0.86900 1.23083 0.85860 1.04656 0.86728 1.86056 1.31684 1.42842 1.61095 1.18333 0.89771 0.88211 0.92285 1.20407 0.97982 1.01841 1.00216 1.17233 0.89468 0.96590 0.85936 1.91508 1.67203 1.95538 1.57277 1.21004 1.03079 1.01716 0.94593 1.20753 0.92472 0.96348 0.97618 1.19973 1.00841 0.98804 0.96751 1.20321 0.96997 0.96104 0.96145 1.22960 0.98683 0.84156 0.99412 1.21372 0.88461 0.98916 0.88452 0.93389 0.95824 0.91462 0.89918 0.91756 0.90840 0.86142 0.83877 0.84559 0.84497 0.89188 0.88759 0.91435 0.90788 0.95894 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.74 10.92 55.49 0.61 -24.13 16 2 C 0.00 0.03 5.00 -17.43 -0.09 -0.06 16 3 Si 0.91 20.65 29.58 -169.99 -5.03 15.62 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.25 -6.51 9.61 -15.06 -0.14 -6.66 16 8 H 0.07 1.74 7.87 -52.49 -0.41 1.33 16 9 N -0.59 -13.83 2.98 -171.76 -0.51 -14.34 16 10 C 0.13 2.62 6.67 -3.60 -0.02 2.60 16 11 C 0.09 1.63 6.60 -3.60 -0.02 1.60 16 12 N -0.59 -9.79 2.94 -172.22 -0.51 -10.29 16 13 C 0.52 8.10 6.99 -10.98 -0.08 8.03 16 14 O -0.55 -9.98 15.15 5.56 0.08 -9.90 16 15 C -0.15 -1.85 1.87 -91.53 -0.17 -2.02 16 16 H 0.11 1.43 7.08 -51.93 -0.37 1.06 16 17 C 0.07 0.81 5.95 37.37 0.22 1.03 16 18 O -0.30 -3.67 10.27 -19.26 -0.20 -3.87 16 19 C 0.16 1.87 6.47 -39.20 -0.25 1.62 16 20 C -0.19 -2.03 9.91 -39.28 -0.39 -2.41 16 21 C 0.13 1.34 7.30 -39.49 -0.29 1.05 16 22 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 23 C -0.18 -1.70 10.03 -39.54 -0.40 -2.09 16 24 C -0.05 -0.50 9.66 -39.54 -0.38 -0.88 16 25 C -0.16 -1.77 5.75 -104.42 -0.60 -2.37 16 26 C -0.06 -0.67 4.75 -27.81 -0.13 -0.80 16 27 C 0.07 1.19 5.28 -3.37 -0.02 1.17 16 28 C 0.15 3.35 5.53 -3.36 -0.02 3.33 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 32 H 0.08 1.38 6.99 -51.93 -0.36 1.02 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.12 1.28 6.23 -51.93 -0.32 0.96 16 36 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.12 7.56 -51.93 -0.39 0.73 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.04 5.01 -51.92 -0.26 0.77 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.11 2.65 5.78 -51.93 -0.30 2.35 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -29.40 353.59 -8.74 -38.14 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.77 Total: 1.76 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.78 Total: 3.12 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.41 Total: -48.77 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.11 Total: -13.77 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.40 -8.74 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.206 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds