Wall clock time and date at job start Tue Mar 31 2020 18:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00323 * 2 1 4 4 H 1.48496 * 109.47406 * 270.00353 * 3 2 1 5 5 H 1.48505 * 109.47232 * 30.00552 * 3 2 1 6 6 H 1.48505 * 109.46918 * 150.00175 * 3 2 1 7 7 C 1.38817 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99841 * 194.68868 * 7 2 1 9 9 N 1.36934 * 120.00158 * 14.67885 * 7 2 1 10 10 C 1.46962 * 120.59717 * 206.93209 * 9 7 2 11 11 C 1.53375 * 108.63601 * 235.20565 * 10 9 7 12 12 N 1.46962 * 108.63348 * 310.57964 * 11 10 9 13 13 C 1.34786 * 120.58687 * 235.19972 * 12 11 10 14 14 O 1.21279 * 120.00350 * 4.06321 * 13 12 11 15 15 C 1.50696 * 119.99558 * 184.05961 * 13 12 11 16 16 H 1.08996 * 109.69629 * 308.63361 * 15 13 12 17 17 C 1.53406 * 109.69675 * 69.18580 * 15 13 12 18 18 O 1.42834 * 108.37584 * 184.40747 * 17 15 13 19 19 C 1.35847 * 117.84664 * 310.74738 * 18 17 15 20 20 C 1.39104 * 118.47015 * 197.26954 * 19 18 17 21 21 C 1.38193 * 120.19595 * 180.28909 * 20 19 18 22 22 F 1.35096 * 120.04891 * 179.97438 * 21 20 19 23 23 C 1.38521 * 119.90086 * 359.71800 * 21 20 19 24 24 C 1.38073 * 119.95686 * 0.45891 * 23 21 20 25 25 C 1.38394 * 121.80140 * 17.37821 * 19 18 17 26 26 C 1.50775 * 121.39945 * 359.35761 * 25 19 18 27 27 C 1.46958 * 118.81650 * 55.47892 * 12 11 10 28 28 C 1.46968 * 120.59187 * 26.91584 * 9 7 2 29 29 H 0.97001 * 119.99915 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.60973 * 115.46554 * 10 9 7 31 31 H 1.09000 * 109.74943 * 355.03272 * 10 9 7 32 32 H 1.08995 * 109.61174 * 190.82859 * 11 10 9 33 33 H 1.09002 * 109.74626 * 70.40623 * 11 10 9 34 34 H 1.09007 * 109.68509 * 64.68790 * 17 15 13 35 35 H 1.08998 * 109.68630 * 304.13117 * 17 15 13 36 36 H 1.07996 * 119.90207 * 0.26517 * 20 19 18 37 37 H 1.08002 * 120.02490 * 180.18349 * 23 21 20 38 38 H 1.08002 * 119.82278 * 179.73991 * 24 23 21 39 39 H 1.09003 * 109.43552 * 137.94311 * 26 25 19 40 40 H 1.08996 * 109.43798 * 257.81886 * 26 25 19 41 41 H 1.08995 * 109.61122 * 64.26543 * 27 12 11 42 42 H 1.09007 * 109.61092 * 184.77923 * 27 12 11 43 43 H 1.09000 * 109.60810 * 244.53727 * 28 9 7 44 44 H 1.09004 * 109.61291 * 5.04617 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0637 -1.2177 0.2366 9 7 1.3590 -2.3686 -0.3016 10 6 1.8383 -3.6518 0.2309 11 6 2.0740 -4.6117 -0.9419 12 7 0.8831 -4.6025 -1.8029 13 6 0.2422 -5.7506 -2.0993 14 8 0.6023 -6.7936 -1.5959 15 6 -0.9220 -5.7382 -3.0561 16 1 -1.6420 -4.9798 -2.7488 17 6 -0.4226 -5.4326 -4.4740 18 8 -1.5556 -5.3256 -5.3372 19 6 -2.4854 -6.3149 -5.2893 20 6 -3.3851 -6.4309 -6.3439 21 6 -4.3495 -7.4205 -6.3291 22 9 -5.2221 -7.5302 -7.3546 23 6 -4.4169 -8.3032 -5.2636 24 6 -3.5268 -8.1868 -4.2145 25 6 -2.5573 -7.1974 -4.2257 26 6 -1.5940 -7.1135 -3.0688 27 6 0.4071 -3.3201 -2.3399 28 6 0.1680 -2.3596 -1.1626 29 1 -0.4850 0.8401 0.0004 30 1 1.0895 -4.0718 0.9024 31 1 2.7718 -3.5001 0.7728 32 1 2.2430 -5.6191 -0.5618 33 1 2.9423 -4.2866 -1.5151 34 1 0.2253 -6.2394 -4.8170 35 1 0.1293 -4.4927 -4.4743 36 1 -3.3299 -5.7453 -7.1765 37 1 -5.1679 -9.0792 -5.2514 38 1 -3.5839 -8.8735 -3.3829 39 1 -2.1355 -7.2611 -2.1345 40 1 -0.8337 -7.8875 -3.1730 41 1 1.1588 -2.9023 -3.0096 42 1 -0.5252 -3.4744 -2.8833 43 1 -0.6997 -2.6875 -0.5902 44 1 -0.0010 -1.3521 -1.5428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599538746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:05 Heat of formation + Delta-G solvation = -77.107365 kcal Electronic energy + Delta-G solvation = -28962.620236 eV Core-core repulsion = 24794.788481 eV Total energy + Delta-G solvation = -4167.831754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.95569 -42.18850 -40.81250 -38.54424 -38.36521 -35.68835 -35.31691 -33.29280 -32.00750 -31.52506 -31.23991 -28.75265 -26.79431 -26.09247 -25.03700 -24.35884 -23.91299 -22.48032 -21.22668 -20.11050 -19.41119 -19.03521 -18.11928 -17.93475 -17.22743 -16.97442 -16.72560 -16.57080 -16.45816 -16.13577 -15.99573 -15.51640 -15.45770 -15.26426 -15.09132 -14.93016 -14.65310 -14.48603 -14.18709 -14.02174 -13.80572 -13.31819 -13.10996 -12.76158 -12.69478 -12.59586 -12.50087 -12.29176 -12.22296 -12.02722 -11.91038 -11.87336 -11.75071 -11.63887 -10.86141 -10.59008 -9.87740 -9.80958 -9.28148 -8.67519 -7.87403 -5.36530 0.04019 0.22286 1.45048 1.50339 1.51384 1.59348 1.87348 2.07878 2.49826 2.51686 3.26283 3.27516 3.31861 3.41638 3.51640 3.58266 3.73696 3.85170 3.96471 4.07422 4.20847 4.22430 4.28068 4.34294 4.37983 4.42997 4.44359 4.57978 4.63756 4.73172 4.80768 4.86412 4.90554 5.00386 5.02307 5.07296 5.15755 5.24295 5.34958 5.51373 5.61089 5.66692 5.67526 6.23445 6.35858 6.41628 7.05342 7.11379 7.79012 8.30545 9.16695 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019367 B = 0.002714 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.404844 B =10314.354640 C =11227.394697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.969 3.031 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.260 4.260 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.131 3.869 11 C 0.105 3.895 12 N -0.598 5.598 13 C 0.523 3.477 14 O -0.574 6.574 15 C -0.142 4.142 16 H 0.113 0.887 17 C 0.076 3.924 18 O -0.312 6.312 19 C 0.142 3.858 20 C -0.193 4.193 21 C 0.117 3.883 22 F -0.141 7.141 23 C -0.178 4.178 24 C -0.051 4.051 25 C -0.168 4.168 26 C -0.053 4.053 27 C 0.091 3.909 28 C 0.159 3.841 29 H 0.251 0.749 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.102 0.898 43 H -0.003 1.003 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 -15.205 -11.934 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.196 1.196 7 C -0.390 4.390 8 H 0.089 0.911 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.019 4.019 12 N -0.329 5.329 13 C 0.312 3.688 14 O -0.454 6.454 15 C -0.164 4.164 16 H 0.131 0.869 17 C 0.000 4.000 18 O -0.225 6.225 19 C 0.096 3.904 20 C -0.213 4.213 21 C 0.098 3.902 22 F -0.119 7.119 23 C -0.197 4.197 24 C -0.069 4.069 25 C -0.169 4.169 26 C -0.090 4.090 27 C -0.033 4.033 28 C 0.032 3.968 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.165 0.835 37 H 0.178 0.822 38 H 0.180 0.820 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.015 0.985 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.358 -15.421 -11.798 20.142 hybrid contribution 0.127 1.195 0.373 1.258 sum -5.231 -14.226 -11.425 18.981 Atomic orbital electron populations 1.70112 1.06518 1.25943 1.55519 1.25765 0.96104 1.01347 1.01160 0.85236 0.77894 0.79444 0.77644 1.20881 1.22532 1.19613 1.19554 0.92370 0.85267 1.41837 0.91107 1.44271 1.31732 1.02307 1.54954 1.21366 0.98098 0.86302 0.93790 1.22050 0.86886 1.00489 0.92433 1.48141 1.29019 1.07074 1.48697 1.20459 0.83524 0.82827 0.82028 1.90641 1.67831 1.31938 1.55038 1.21949 0.96877 1.01723 0.95808 0.86897 1.23094 0.85825 1.05335 0.85711 1.86043 1.31979 1.43284 1.61225 1.18489 0.90186 0.88722 0.92964 1.20521 0.98132 1.02244 1.00363 1.17412 0.89478 0.96985 0.86346 1.91498 1.67302 1.95576 1.57552 1.21294 1.03150 1.01551 0.93698 1.21042 0.91542 0.96020 0.98260 1.20013 1.01285 0.99330 0.96311 1.20262 0.96990 0.95137 0.96622 1.22689 1.00423 0.82986 0.97173 1.21195 0.87214 0.98793 0.89574 0.93941 0.97380 0.90851 0.89270 0.90625 0.90074 0.85466 0.83474 0.82181 0.82037 0.88882 0.89120 0.90412 0.88041 0.98517 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.16 10.92 21.65 0.24 -51.93 16 2 C -0.05 -2.55 5.00 84.86 0.42 -2.13 16 3 Si 0.97 42.63 29.58 68.60 2.03 44.66 16 4 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.26 -13.41 9.61 84.04 0.81 -12.60 16 8 H 0.07 3.55 7.87 -2.91 -0.02 3.52 16 9 N -0.61 -28.62 2.98 -697.33 -2.08 -30.69 16 10 C 0.13 5.19 6.67 86.42 0.58 5.77 16 11 C 0.11 3.47 6.60 86.42 0.57 4.04 16 12 N -0.60 -18.92 2.94 -817.16 -2.40 -21.32 16 13 C 0.52 15.53 6.99 87.65 0.61 16.14 16 14 O -0.57 -19.92 15.15 -3.03 -0.05 -19.97 16 15 C -0.14 -3.32 1.87 -11.38 -0.02 -3.34 16 16 H 0.11 2.67 7.08 -2.39 -0.02 2.66 16 17 C 0.08 1.56 5.95 72.12 0.43 1.99 16 18 O -0.31 -7.09 10.27 -91.83 -0.94 -8.03 16 19 C 0.14 3.12 6.47 22.52 0.15 3.26 16 20 C -0.19 -4.01 9.91 22.47 0.22 -3.78 16 21 C 0.12 2.27 7.30 22.33 0.16 2.43 16 22 F -0.14 -2.86 17.27 44.97 0.78 -2.08 16 23 C -0.18 -2.81 10.03 22.30 0.22 -2.58 16 24 C -0.05 -0.80 9.66 22.30 0.22 -0.59 16 25 C -0.17 -3.34 5.75 -19.73 -0.11 -3.46 16 26 C -0.05 -1.11 4.75 29.89 0.14 -0.97 16 27 C 0.09 2.90 5.28 86.57 0.46 3.35 16 28 C 0.16 6.95 5.53 86.56 0.48 7.43 16 29 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 2.76 7.94 -2.39 -0.02 2.75 16 32 H 0.09 2.85 6.99 -2.39 -0.02 2.84 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.13 2.43 6.23 -2.39 -0.01 2.41 16 36 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 37 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 1.99 7.56 -2.39 -0.02 1.97 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.10 2.67 5.01 -2.38 -0.01 2.66 16 43 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.08 4.10 5.78 -2.39 -0.01 4.09 16 Total: -1.00 -63.06 353.59 3.94 -59.12 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.03 Total: 15.28 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 5.33 Total: 14.96 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -4.24 Total: -103.94 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.99 Total: -28.00 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -63.06 3.94 -59.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.989 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds