Wall clock time and date at job start Tue Mar 31 2020 17:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00103 * 2 1 4 4 O 1.20826 * 120.00198 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00051 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.46714 * 179.97438 * 5 3 2 7 7 C 1.36773 * 119.99865 * 264.31158 * 6 5 3 8 8 H 1.08002 * 119.99854 * 133.77343 * 7 6 5 9 9 C 1.39114 * 120.00476 * 313.76902 * 7 6 5 10 10 N 1.31316 * 120.00225 * 168.34371 * 9 7 6 11 11 Si 1.86798 * 119.99737 * 348.33951 * 9 7 6 12 12 H 1.48501 * 109.46813 * 95.31669 * 11 9 7 13 13 H 1.48500 * 109.47167 * 215.31709 * 11 9 7 14 14 H 1.48500 * 109.47503 * 335.31935 * 11 9 7 15 15 C 1.34774 * 120.00094 * 84.31977 * 6 5 3 16 16 O 1.21576 * 119.99977 * 4.88820 * 15 6 5 17 17 C 1.47959 * 120.00191 * 184.88074 * 15 6 5 18 18 C 1.39356 * 120.05826 * 180.21487 * 17 15 6 19 19 N 1.32158 * 120.05595 * 180.02562 * 18 17 15 20 20 C 1.31957 * 120.17541 * 0.02562 * 19 18 17 21 21 C 1.39651 * 120.11594 * 359.97438 * 20 19 18 22 22 N 1.38968 * 120.03106 * 179.97438 * 21 20 19 23 23 C 1.47840 * 110.99975 * 118.92265 * 22 21 20 24 24 C 1.54907 * 104.79915 * 146.36538 * 23 22 21 25 25 C 1.55142 * 101.65097 * 322.93122 * 24 23 22 26 26 C 1.47440 * 111.00317 * 239.76497 * 22 21 20 27 27 N 1.32351 * 119.94198 * 0.27868 * 21 20 19 28 28 H 1.09008 * 109.47274 * 300.00080 * 1 2 3 29 29 H 1.09002 * 109.47489 * 59.99815 * 1 2 3 30 30 H 1.09005 * 109.47547 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46949 * 59.99776 * 5 3 2 32 32 H 1.08997 * 109.46835 * 299.99828 * 5 3 2 33 33 H 0.96999 * 120.00054 * 180.02562 * 10 9 7 34 34 H 1.08004 * 119.97061 * 0.04880 * 18 17 15 35 35 H 1.08006 * 119.94244 * 179.97438 * 20 19 18 36 36 H 1.09005 * 110.37656 * 27.53257 * 23 22 21 37 37 H 1.09000 * 110.37499 * 265.19983 * 23 22 21 38 38 H 1.09004 * 110.99135 * 204.84174 * 24 23 22 39 39 H 1.08995 * 110.99022 * 81.01883 * 24 23 22 40 40 H 1.08998 * 110.70449 * 154.03673 * 25 24 23 41 41 H 1.09000 * 110.70643 * 277.26845 * 25 24 23 42 42 H 1.09005 * 109.88852 * 117.33426 * 26 22 21 43 43 H 1.09002 * 109.88763 * 356.15316 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.2876 3.3019 -1.1800 8 1 3.8921 4.2846 -1.3905 9 6 5.1083 2.6691 -2.1081 10 7 5.2195 3.1527 -3.3238 11 14 6.0523 1.1314 -1.6247 12 1 5.2795 -0.0710 -2.0276 13 1 7.3707 1.1245 -2.3082 14 1 6.2573 1.1181 -0.1539 15 6 4.0623 3.3589 1.1602 16 8 3.8772 2.7836 2.2151 17 6 4.3763 4.8048 1.1512 18 6 4.4645 5.5074 2.3515 19 7 4.7445 6.7989 2.3435 20 6 4.9410 7.4279 1.2002 21 6 4.8544 6.7310 -0.0069 22 7 5.0612 7.3952 -1.2099 23 6 6.2142 6.8249 -1.9386 24 6 5.8421 6.9606 -3.4362 25 6 4.3178 6.6735 -3.4076 26 6 3.8697 7.3071 -2.0738 27 7 4.5694 5.4385 -0.0045 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9557 0.7808 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 5.7914 2.7112 -3.9710 34 1 4.3042 4.9958 3.2891 35 1 5.1692 8.4836 1.1980 36 1 6.3489 5.7759 -1.6746 37 1 7.1194 7.3913 -1.7196 38 1 6.3679 6.2192 -4.0379 39 1 6.0427 7.9688 -3.7985 40 1 3.8192 7.1541 -4.2493 41 1 4.1277 5.6002 -3.4075 42 1 3.4674 8.3041 -2.2535 43 1 3.1141 6.6799 -1.6006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601203742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:03 Heat of formation + Delta-G solvation = -18.053142 kcal Electronic energy + Delta-G solvation = -30561.555367 eV Core-core repulsion = 26416.204358 eV Total energy + Delta-G solvation = -4145.351010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93808 -40.07383 -38.72666 -37.96578 -36.03318 -35.09928 -33.70004 -32.23962 -32.08854 -29.17249 -28.75481 -28.47094 -26.79061 -25.45710 -24.25853 -23.46978 -21.28710 -20.65313 -20.49702 -19.57589 -18.18973 -17.52019 -17.36395 -16.55693 -16.40118 -16.12422 -15.84599 -15.50976 -15.20490 -15.00022 -14.57249 -14.26133 -13.75365 -13.31676 -13.22684 -13.05831 -12.89229 -12.68011 -12.60141 -12.35618 -12.18392 -11.92867 -11.68305 -11.61049 -11.37431 -11.01961 -10.81055 -10.69510 -10.62031 -10.47556 -10.45382 -10.12526 -10.02492 -9.95331 -9.54528 -9.25625 -8.73998 -8.66825 -8.25671 -7.76923 -6.53499 -4.21142 0.93748 1.53753 2.72061 2.87881 2.91421 3.10643 3.12886 3.50631 3.89680 3.94466 4.02827 4.35131 4.65884 4.69349 4.91962 5.03827 5.22454 5.26870 5.28259 5.33496 5.36417 5.52508 5.54541 5.65414 5.69806 5.74221 5.80793 5.81161 5.90943 6.02383 6.11398 6.29614 6.44022 6.48255 6.52039 6.66310 6.72721 6.94510 7.05793 7.16616 7.47921 7.69727 7.84663 8.20024 8.24294 8.42088 8.75578 9.09358 9.34354 10.50575 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.005653 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.008085 B = 4952.103126 C = 5941.635776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.452 3.548 4 O -0.490 6.490 5 C 0.105 3.895 6 N -0.425 5.425 7 C -0.314 4.314 8 H 0.144 0.856 9 C 0.068 3.932 10 N -0.845 5.845 11 Si 0.854 3.146 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.258 1.258 15 C 0.537 3.463 16 O -0.584 6.584 17 C 0.073 3.927 18 C 0.081 3.919 19 N -0.445 5.445 20 C 0.075 3.925 21 C 0.226 3.774 22 N -0.475 5.475 23 C 0.048 3.952 24 C -0.116 4.116 25 C -0.139 4.139 26 C 0.053 3.947 27 N -0.381 5.381 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.276 0.724 34 H 0.175 0.825 35 H 0.168 0.832 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 2.012 0.461 2.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.292 3.708 4 O -0.375 6.375 5 C -0.020 4.020 6 N -0.144 5.144 7 C -0.443 4.443 8 H 0.161 0.839 9 C -0.140 4.140 10 N -0.480 5.480 11 Si 0.680 3.320 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.182 1.182 15 C 0.326 3.674 16 O -0.468 6.468 17 C -0.069 4.069 18 C -0.079 4.079 19 N -0.158 5.158 20 C -0.087 4.087 21 C -0.007 4.007 22 N -0.199 5.199 23 C -0.078 4.078 24 C -0.154 4.154 25 C -0.178 4.178 26 C -0.074 4.074 27 N -0.102 5.102 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.192 0.808 35 H 0.186 0.814 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.125 0.875 42 H 0.089 0.911 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.306 2.518 0.906 2.978 hybrid contribution 0.171 -1.608 -0.343 1.653 sum -1.135 0.910 0.563 1.559 Atomic orbital electron populations 1.23157 0.77307 1.02960 1.02318 1.86513 1.22822 1.34263 1.84844 1.24572 0.92646 0.81286 0.72279 1.90629 1.66603 1.36258 1.43995 1.21454 0.87038 0.88327 1.05191 1.43344 1.55714 1.07976 1.07326 1.20003 1.28056 1.04634 0.91581 0.83929 1.25463 0.95945 0.97520 0.95095 1.69529 1.36091 1.39825 1.02560 0.87239 0.80791 0.83444 0.80493 1.19606 1.20669 1.18217 1.17781 0.80754 0.85345 0.83475 1.90668 1.56088 1.69002 1.31018 1.21892 0.99472 0.95884 0.89685 1.23615 0.94825 0.90209 0.99246 1.68518 1.09748 1.08985 1.28598 1.23608 0.96537 1.01255 0.87327 1.21458 0.96543 0.89199 0.93500 1.61806 1.05906 1.49764 1.02432 1.23093 0.91818 0.99956 0.92964 1.22521 0.96735 1.00683 0.95430 1.22826 0.95150 1.04234 0.95549 1.22767 0.91469 1.00056 0.93069 1.69732 1.05437 1.07366 1.27618 0.92256 0.92147 0.88604 0.87226 0.86911 0.91356 0.80841 0.81445 0.90631 0.91097 0.90411 0.92146 0.92054 0.87510 0.91060 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.51 10.56 -39.24 -0.41 -6.92 16 3 C 0.45 9.50 7.99 36.01 0.29 9.79 16 4 O -0.49 -11.60 16.05 -18.75 -0.30 -11.90 16 5 C 0.10 2.23 4.40 -5.19 -0.02 2.20 16 6 N -0.42 -10.02 1.61 -117.14 -0.19 -10.21 16 7 C -0.31 -7.67 8.17 -15.02 -0.12 -7.79 16 8 H 0.14 3.74 5.87 -52.49 -0.31 3.43 16 9 C 0.07 1.62 5.39 -17.45 -0.09 1.53 16 10 N -0.84 -20.35 13.66 55.50 0.76 -19.59 16 11 Si 0.85 18.41 24.81 -169.99 -4.22 14.20 16 12 H -0.27 -5.54 6.86 56.52 0.39 -5.15 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.26 -5.66 7.01 56.52 0.40 -5.26 16 15 C 0.54 12.65 7.42 -12.28 -0.09 12.56 16 16 O -0.58 -14.12 15.98 5.30 0.08 -14.04 16 17 C 0.07 1.58 6.65 -82.87 -0.55 1.03 16 18 C 0.08 1.55 10.76 -17.00 -0.18 1.36 16 19 N -0.44 -7.85 10.48 -12.52 -0.13 -7.99 16 20 C 0.08 1.25 11.16 -16.97 -0.19 1.06 16 21 C 0.23 4.15 5.15 -154.90 -0.80 3.36 16 22 N -0.48 -7.96 5.16 -169.85 -0.88 -8.84 16 23 C 0.05 0.80 6.63 -2.30 -0.02 0.79 16 24 C -0.12 -1.79 7.08 -24.59 -0.17 -1.96 16 25 C -0.14 -2.33 6.94 -24.91 -0.17 -2.50 16 26 C 0.05 0.88 6.71 -2.84 -0.02 0.86 16 27 N -0.38 -8.07 5.20 -8.83 -0.05 -8.11 16 28 H 0.06 0.80 8.13 -51.92 -0.42 0.38 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.11 2.28 3.99 -51.93 -0.21 2.07 16 32 H 0.11 2.24 7.53 -51.93 -0.39 1.85 16 33 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 34 H 0.17 3.04 7.64 -52.48 -0.40 2.64 16 35 H 0.17 2.25 8.06 -52.48 -0.42 1.82 16 36 H 0.08 1.53 7.32 -51.93 -0.38 1.15 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.11 2.20 7.85 -51.93 -0.41 1.79 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.06 1.14 7.27 -51.93 -0.38 0.76 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -28.09 358.46 -6.44 -34.53 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.43 Total: 9.62 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: -1.08 Total: 23.84 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.48 Total: -54.73 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.63 Total: -32.86 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -4.22 Total: 14.20 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.09 -6.44 -34.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601203742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.477 kcal (2) G-P(sol) polarization free energy of solvation -28.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds