Wall clock time and date at job start Tue Mar 31 2020 17:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00103 * 2 1 4 4 O 1.20826 * 120.00198 * 0.02562 * 3 2 1 5 5 C 1.50708 * 120.00051 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.46714 * 179.97438 * 5 3 2 7 7 C 1.36773 * 119.99865 * 264.31158 * 6 5 3 8 8 H 1.08002 * 119.99854 * 133.77343 * 7 6 5 9 9 C 1.39114 * 120.00476 * 313.76902 * 7 6 5 10 10 N 1.31316 * 120.00225 * 168.34371 * 9 7 6 11 11 Si 1.86798 * 119.99737 * 348.33951 * 9 7 6 12 12 H 1.48501 * 109.46813 * 95.31669 * 11 9 7 13 13 H 1.48500 * 109.47167 * 215.31709 * 11 9 7 14 14 H 1.48500 * 109.47503 * 335.31935 * 11 9 7 15 15 C 1.34774 * 120.00094 * 84.31977 * 6 5 3 16 16 O 1.21576 * 119.99977 * 4.88820 * 15 6 5 17 17 C 1.47959 * 120.00191 * 184.88074 * 15 6 5 18 18 C 1.39356 * 120.05826 * 180.21487 * 17 15 6 19 19 N 1.32158 * 120.05595 * 180.02562 * 18 17 15 20 20 C 1.31957 * 120.17541 * 0.02562 * 19 18 17 21 21 C 1.39651 * 120.11594 * 359.97438 * 20 19 18 22 22 N 1.38968 * 120.03106 * 179.97438 * 21 20 19 23 23 C 1.47840 * 110.99975 * 118.92265 * 22 21 20 24 24 C 1.54907 * 104.79915 * 146.36538 * 23 22 21 25 25 C 1.55142 * 101.65097 * 322.93122 * 24 23 22 26 26 C 1.47440 * 111.00317 * 239.76497 * 22 21 20 27 27 N 1.32351 * 119.94198 * 0.27868 * 21 20 19 28 28 H 1.09008 * 109.47274 * 300.00080 * 1 2 3 29 29 H 1.09002 * 109.47489 * 59.99815 * 1 2 3 30 30 H 1.09005 * 109.47547 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46949 * 59.99776 * 5 3 2 32 32 H 1.08997 * 109.46835 * 299.99828 * 5 3 2 33 33 H 0.96999 * 120.00054 * 180.02562 * 10 9 7 34 34 H 1.08004 * 119.97061 * 0.04880 * 18 17 15 35 35 H 1.08006 * 119.94244 * 179.97438 * 20 19 18 36 36 H 1.09005 * 110.37656 * 27.53257 * 23 22 21 37 37 H 1.09000 * 110.37499 * 265.19983 * 23 22 21 38 38 H 1.09004 * 110.99135 * 204.84174 * 24 23 22 39 39 H 1.08995 * 110.99022 * 81.01883 * 24 23 22 40 40 H 1.08998 * 110.70449 * 154.03673 * 25 24 23 41 41 H 1.09000 * 110.70643 * 277.26845 * 25 24 23 42 42 H 1.09005 * 109.88852 * 117.33426 * 26 22 21 43 43 H 1.09002 * 109.88763 * 356.15316 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9816 2.6797 -0.0011 7 6 4.2876 3.3019 -1.1800 8 1 3.8921 4.2846 -1.3905 9 6 5.1083 2.6691 -2.1081 10 7 5.2195 3.1527 -3.3238 11 14 6.0523 1.1314 -1.6247 12 1 5.2795 -0.0710 -2.0276 13 1 7.3707 1.1245 -2.3082 14 1 6.2573 1.1181 -0.1539 15 6 4.0623 3.3589 1.1602 16 8 3.8772 2.7836 2.2151 17 6 4.3763 4.8048 1.1512 18 6 4.4645 5.5074 2.3515 19 7 4.7445 6.7989 2.3435 20 6 4.9410 7.4279 1.2002 21 6 4.8544 6.7310 -0.0069 22 7 5.0612 7.3952 -1.2099 23 6 6.2142 6.8249 -1.9386 24 6 5.8421 6.9606 -3.4362 25 6 4.3178 6.6735 -3.4076 26 6 3.8697 7.3071 -2.0738 27 7 4.5694 5.4385 -0.0045 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.9557 0.7808 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 5.7914 2.7112 -3.9710 34 1 4.3042 4.9958 3.2891 35 1 5.1692 8.4836 1.1980 36 1 6.3489 5.7759 -1.6746 37 1 7.1194 7.3913 -1.7196 38 1 6.3679 6.2192 -4.0379 39 1 6.0427 7.9688 -3.7985 40 1 3.8192 7.1541 -4.2493 41 1 4.1277 5.6002 -3.4075 42 1 3.4674 8.3041 -2.2535 43 1 3.1141 6.6799 -1.6006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601203742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:02 Heat of formation + Delta-G solvation = -35.865041 kcal Electronic energy + Delta-G solvation = -30562.327749 eV Core-core repulsion = 26416.204358 eV Total energy + Delta-G solvation = -4146.123391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.46278 -41.67830 -40.36260 -39.40132 -37.64149 -36.87336 -35.20248 -33.97522 -33.62324 -30.72914 -30.20125 -29.81008 -28.10880 -27.20670 -25.85095 -24.95179 -22.83435 -21.98779 -21.92336 -21.29113 -19.88819 -19.11829 -18.96285 -18.11360 -17.84714 -17.59711 -17.37272 -17.13068 -16.81045 -16.51583 -16.13029 -15.97928 -15.31272 -14.82712 -14.67750 -14.59516 -14.36960 -14.24133 -14.15526 -13.84949 -13.62619 -13.51374 -13.14328 -13.03031 -12.89982 -12.65315 -12.28915 -12.21251 -11.99365 -11.91529 -11.86990 -11.85265 -11.67412 -11.37547 -11.33383 -10.99264 -10.29368 -10.15516 -9.85765 -9.41580 -8.34183 -6.07678 -0.57626 0.04659 1.05672 1.17573 1.29388 1.37795 1.41806 1.87571 2.16901 2.27956 2.60708 2.75875 2.99401 3.24225 3.28739 3.57278 3.77092 3.84125 3.87114 3.95737 4.05366 4.16482 4.21045 4.27270 4.27663 4.35149 4.47050 4.50579 4.61899 4.71260 4.75983 4.98443 5.10955 5.16198 5.18161 5.19425 5.26480 5.31478 5.57233 5.77135 5.98933 6.07915 6.22698 6.51236 6.63394 6.71188 6.96310 7.25383 7.52751 8.70464 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.005653 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.008085 B = 4952.103126 C = 5941.635776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.456 3.544 4 O -0.524 6.524 5 C 0.098 3.902 6 N -0.435 5.435 7 C -0.318 4.318 8 H 0.120 0.880 9 C 0.040 3.960 10 N -0.865 5.865 11 Si 0.893 3.107 12 H -0.250 1.250 13 H -0.282 1.282 14 H -0.265 1.265 15 C 0.529 3.471 16 O -0.599 6.599 17 C 0.041 3.959 18 C 0.089 3.911 19 N -0.442 5.442 20 C 0.100 3.900 21 C 0.214 3.786 22 N -0.459 5.459 23 C 0.049 3.951 24 C -0.105 4.105 25 C -0.137 4.137 26 C 0.057 3.943 27 N -0.402 5.402 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.142 0.858 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.277 0.723 34 H 0.185 0.815 35 H 0.210 0.790 36 H 0.033 0.967 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 3.034 0.664 3.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.298 3.702 4 O -0.412 6.412 5 C -0.027 4.027 6 N -0.153 5.153 7 C -0.447 4.447 8 H 0.137 0.863 9 C -0.166 4.166 10 N -0.501 5.501 11 Si 0.718 3.282 12 H -0.175 1.175 13 H -0.208 1.208 14 H -0.189 1.189 15 C 0.319 3.681 16 O -0.484 6.484 17 C -0.101 4.101 18 C -0.070 4.070 19 N -0.155 5.155 20 C -0.063 4.063 21 C -0.020 4.020 22 N -0.182 5.182 23 C -0.077 4.077 24 C -0.143 4.143 25 C -0.175 4.175 26 C -0.070 4.070 27 N -0.122 5.122 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.202 0.798 35 H 0.227 0.773 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.121 0.879 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.062 3.482 1.110 3.806 hybrid contribution 0.012 -1.838 -0.379 1.876 sum -1.050 1.644 0.732 2.084 Atomic orbital electron populations 1.23579 0.74669 1.05965 1.02263 1.86484 1.25269 1.32123 1.84002 1.24433 0.92576 0.81700 0.71507 1.90611 1.67265 1.37559 1.45813 1.21543 0.87743 0.87435 1.05943 1.43392 1.56135 1.08772 1.07025 1.19706 1.28777 1.04227 0.92008 0.86315 1.25820 0.96319 0.99494 0.94993 1.69608 1.36686 1.40784 1.03023 0.86618 0.79932 0.81985 0.79654 1.17534 1.20843 1.18937 1.18201 0.80177 0.86375 0.83315 1.90623 1.56819 1.69694 1.31302 1.21822 1.02088 0.95374 0.90800 1.23734 0.93867 0.90694 0.98730 1.68659 1.09889 1.08122 1.28863 1.24225 0.93365 1.02646 0.86064 1.21832 0.96709 0.88563 0.94941 1.62017 1.05813 1.48502 1.01915 1.23081 0.92863 0.97884 0.93907 1.22481 0.95322 1.02090 0.94381 1.22715 0.96597 1.01617 0.96613 1.22794 0.90726 1.00974 0.92511 1.69585 1.05563 1.09022 1.28019 0.92281 0.92345 0.84034 0.86772 0.85657 0.91257 0.79790 0.77327 0.94842 0.88601 0.91669 0.88825 0.89725 0.92061 0.87858 0.95403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.51 10.56 -51.37 -0.54 -13.06 16 3 C 0.46 19.38 7.99 71.24 0.57 19.95 16 4 O -0.52 -25.50 16.05 21.96 0.35 -25.15 16 5 C 0.10 4.21 4.40 85.64 0.38 4.59 16 6 N -0.43 -21.14 1.61 -642.79 -1.03 -22.17 16 7 C -0.32 -16.23 8.17 84.13 0.69 -15.55 16 8 H 0.12 6.62 5.87 -2.91 -0.02 6.60 16 9 C 0.04 1.97 5.39 84.98 0.46 2.42 16 10 N -0.87 -43.19 13.66 21.69 0.30 -42.90 16 11 Si 0.89 38.18 24.81 68.60 1.70 39.88 16 12 H -0.25 -9.82 6.86 99.48 0.68 -9.14 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.26 -11.55 7.01 99.48 0.70 -10.85 16 15 C 0.53 25.68 7.42 86.82 0.64 26.32 16 16 O -0.60 -29.57 15.98 -3.95 -0.06 -29.64 16 17 C 0.04 1.79 6.65 41.78 0.28 2.07 16 18 C 0.09 3.34 10.76 84.91 0.91 4.26 16 19 N -0.44 -14.80 10.48 -193.51 -2.03 -16.83 16 20 C 0.10 3.08 11.16 85.02 0.95 4.03 16 21 C 0.21 7.71 5.15 133.22 0.69 8.40 16 22 N -0.46 -14.72 5.16 -691.29 -3.57 -18.29 16 23 C 0.05 1.60 6.63 86.77 0.58 2.18 16 24 C -0.10 -3.11 7.08 31.98 0.23 -2.89 16 25 C -0.14 -4.56 6.94 31.77 0.22 -4.34 16 26 C 0.06 1.84 6.71 86.65 0.58 2.42 16 27 N -0.40 -17.45 5.20 -181.84 -0.95 -18.40 16 28 H 0.06 1.53 8.13 -2.38 -0.02 1.51 16 29 H 0.06 1.53 8.13 -2.39 -0.02 1.52 16 30 H 0.14 2.32 8.14 -2.38 -0.02 2.31 16 31 H 0.11 4.75 3.99 -2.39 -0.01 4.74 16 32 H 0.13 5.00 7.53 -2.39 -0.02 4.98 16 33 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 34 H 0.19 6.41 7.64 -2.91 -0.02 6.39 16 35 H 0.21 4.65 8.06 -2.91 -0.02 4.63 16 36 H 0.03 1.39 7.32 -2.38 -0.02 1.37 16 37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 2.64 7.85 -2.39 -0.02 2.63 16 42 H 0.10 2.70 8.14 -2.38 -0.02 2.69 16 43 H 0.03 1.08 7.27 -2.39 -0.02 1.06 16 Total: -1.00 -63.68 358.46 3.55 -60.13 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 1.02 Total: 30.64 kcal Atomic # 6 Polarization: 47.42 SS G_CDS: 8.36 Total: 55.79 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -7.28 Total: -118.58 kcal Atomic # 8 Polarization: -67.59 SS G_CDS: -0.25 Total: -67.84 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.70 Total: 39.88 kcal Total: -63.68 3.55 -60.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601203742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.263 kcal (2) G-P(sol) polarization free energy of solvation -63.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds