Wall clock time and date at job start Tue Mar 31 2020 17:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34235 * 116.99506 * 2 1 4 4 O 1.20816 * 120.00224 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99633 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47347 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99669 * 275.00116 * 6 5 3 8 8 H 1.08001 * 120.00063 * 142.17806 * 7 6 5 9 9 C 1.38813 * 120.00286 * 322.17325 * 7 6 5 10 10 N 1.31609 * 120.00124 * 155.30058 * 9 7 6 11 11 Si 1.86806 * 119.99682 * 335.30311 * 9 7 6 12 12 H 1.48506 * 109.47061 * 95.64034 * 11 9 7 13 13 H 1.48502 * 109.46915 * 215.63750 * 11 9 7 14 14 H 1.48496 * 109.47144 * 335.63874 * 11 9 7 15 15 S 1.65591 * 120.00160 * 94.99663 * 6 5 3 16 16 O 1.42097 * 104.27918 * 330.68607 * 15 6 5 17 17 O 1.42098 * 104.27966 * 202.83190 * 15 6 5 18 18 C 1.81400 * 104.45203 * 86.76029 * 15 6 5 19 19 C 1.52992 * 109.47388 * 180.02562 * 18 15 6 20 20 C 1.53004 * 109.47434 * 179.97438 * 19 18 15 21 21 N 1.46898 * 109.47453 * 179.97438 * 20 19 18 22 22 C 1.48538 * 110.99466 * 52.60797 * 21 20 19 23 23 C 1.54943 * 103.22242 * 159.72239 * 22 21 20 24 24 C 1.54591 * 102.91936 * 322.58039 * 23 22 21 25 25 C 1.47895 * 110.99874 * 170.00093 * 21 20 19 26 26 H 1.08991 * 109.47070 * 299.99918 * 1 2 3 27 27 H 1.08999 * 109.46952 * 60.00008 * 1 2 3 28 28 H 1.09000 * 109.46865 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47379 * 59.99625 * 5 3 2 30 30 H 1.09004 * 109.46939 * 299.99920 * 5 3 2 31 31 H 0.96998 * 120.00034 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.46818 * 300.00234 * 18 15 6 33 33 H 1.08993 * 109.46883 * 59.99619 * 18 15 6 34 34 H 1.09003 * 109.47241 * 299.99863 * 19 18 15 35 35 H 1.09002 * 109.47683 * 59.99778 * 19 18 15 36 36 H 1.08993 * 109.46940 * 300.00326 * 20 19 18 37 37 H 1.09005 * 109.46295 * 59.99821 * 20 19 18 38 38 H 1.09004 * 110.66629 * 278.14952 * 22 21 20 39 39 H 1.08988 * 110.66848 * 41.28509 * 22 21 20 40 40 H 1.09006 * 110.71900 * 204.22651 * 23 22 21 41 41 H 1.08993 * 110.72892 * 80.94408 * 23 22 21 42 42 H 1.08999 * 110.31084 * 263.04349 * 24 23 22 43 43 H 1.09002 * 110.30424 * 140.87824 * 24 23 22 44 44 H 1.09004 * 109.91845 * 333.51002 * 25 21 20 45 45 H 1.09003 * 109.91761 * 94.60935 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.0761 3.3665 -1.1809 8 1 3.7780 4.4034 -1.2280 9 6 4.5552 2.7298 -2.3175 10 7 4.2151 3.1691 -3.5106 11 14 5.6826 1.2493 -2.1536 12 1 4.8795 0.0033 -2.2420 13 1 6.6875 1.2690 -3.2468 14 1 6.3770 1.2987 -0.8419 15 16 4.3368 3.4375 1.4291 16 8 3.5235 2.7759 2.3882 17 8 4.1599 4.8189 1.1468 18 6 6.0891 3.0657 1.7154 19 6 6.5419 3.7183 3.0229 20 6 8.0197 3.4042 3.2647 21 7 8.4548 4.0313 4.5198 22 6 7.5539 3.6594 5.6408 23 6 8.4173 3.9384 6.8968 24 6 9.8307 3.5012 6.4487 25 6 9.8005 3.5582 4.9101 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9557 0.7810 -0.8908 30 1 3.9563 0.7807 0.8892 31 1 4.5502 2.7244 -4.3049 32 1 6.2251 1.9863 1.7823 33 1 6.6830 3.4562 0.8891 34 1 6.4058 4.7978 2.9564 35 1 5.9479 3.3275 3.8490 36 1 8.1555 2.3248 3.3313 37 1 8.6140 3.7948 2.4386 38 1 6.6613 4.2851 5.6408 39 1 7.2856 2.6045 5.5849 40 1 8.0768 3.3373 7.7400 41 1 8.4028 4.9991 7.1470 42 1 10.0372 2.4854 6.7856 43 1 10.5808 4.1896 6.8381 44 1 9.9789 2.5649 4.4981 45 1 10.5581 4.2524 4.5463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601349457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:07 Heat of formation + Delta-G solvation = -136.002900 kcal Electronic energy + Delta-G solvation = -28038.174052 eV Core-core repulsion = 23990.859557 eV Total energy + Delta-G solvation = -4047.314495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.79307 -39.11406 -36.49171 -35.95230 -35.22885 -34.77278 -34.49996 -32.27464 -30.88175 -29.03523 -28.70322 -26.51997 -25.63656 -24.25293 -22.38080 -20.97047 -20.88120 -20.39774 -18.42787 -17.55043 -17.19826 -16.97398 -16.24613 -16.22106 -15.83291 -15.61011 -15.53322 -15.24184 -14.94797 -14.34995 -14.13610 -13.37420 -13.31113 -13.20040 -13.08999 -12.95367 -12.73911 -12.57815 -12.11697 -11.91868 -11.69919 -11.62363 -11.57703 -11.38843 -11.28768 -11.23157 -11.11604 -10.95949 -10.89260 -10.78521 -10.61714 -10.53021 -10.33245 -10.29316 -9.94830 -9.69391 -9.21098 -8.52819 -8.34801 -6.78491 -4.23450 1.22213 2.83311 2.89370 2.99719 3.06250 3.18945 3.72233 3.84896 3.89974 4.45317 4.51964 4.53479 4.75232 4.89461 4.94532 5.11002 5.16127 5.17038 5.28547 5.33143 5.35753 5.38694 5.45946 5.48906 5.51974 5.57557 5.61130 5.64422 5.69934 5.75092 5.80016 5.82203 5.90196 5.92084 6.01374 6.18343 6.31495 6.55694 6.77331 6.92305 6.93676 7.29210 8.16428 8.44795 8.74569 8.78077 10.28399 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.003602 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.102073 B = 7772.654113 C = 8648.704133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.371 6.371 3 C 0.449 3.551 4 O -0.476 6.476 5 C 0.129 3.871 6 N -0.821 5.821 7 C -0.256 4.256 8 H 0.126 0.874 9 C 0.065 3.935 10 N -0.816 5.816 11 Si 0.858 3.142 12 H -0.263 1.263 13 H -0.276 1.276 14 H -0.252 1.252 15 S 2.505 3.495 16 O -0.993 6.993 17 O -0.956 6.956 18 C -0.660 4.660 19 C -0.104 4.104 20 C 0.054 3.946 21 N -0.520 5.520 22 C 0.027 3.973 23 C -0.124 4.124 24 C -0.131 4.131 25 C 0.034 3.966 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.283 0.717 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.043 0.957 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 -6.922 11.403 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 C 0.288 3.712 4 O -0.359 6.359 5 C 0.000 4.000 6 N -0.645 5.645 7 C -0.401 4.401 8 H 0.143 0.857 9 C -0.151 4.151 10 N -0.451 5.451 11 Si 0.683 3.317 12 H -0.190 1.190 13 H -0.202 1.202 14 H -0.176 1.176 15 S 2.607 3.393 16 O -0.983 6.983 17 O -0.946 6.946 18 C -0.781 4.781 19 C -0.143 4.143 20 C -0.074 4.074 21 N -0.244 5.244 22 C -0.100 4.100 23 C -0.162 4.162 24 C -0.169 4.169 25 C -0.094 4.094 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.652 -5.520 11.910 14.717 hybrid contribution 1.125 -1.985 -0.347 2.307 sum 7.777 -7.504 11.564 15.827 Atomic orbital electron populations 1.23141 0.77428 1.02778 1.02434 1.86487 1.22747 1.34456 1.85157 1.24414 0.92576 0.81333 0.72913 1.90639 1.66270 1.36138 1.42839 1.20898 0.87828 0.86623 1.04637 1.53370 1.70149 1.17912 1.23077 1.19316 1.38062 0.99683 0.83067 0.85704 1.25798 0.95908 0.98340 0.95038 1.69866 1.37339 1.39822 0.98117 0.87203 0.82009 0.82453 0.80041 1.18968 1.20203 1.17560 1.11860 0.77607 0.75786 0.74016 1.93392 1.66025 1.75970 1.62907 1.93430 1.85214 1.32798 1.83192 1.31072 1.33639 1.08748 1.04635 1.21258 0.96062 1.01723 0.95282 1.22332 0.96176 0.96601 0.92333 1.64830 1.01888 1.55148 1.02562 1.23321 0.96966 0.99491 0.90253 1.22491 0.94537 1.02044 0.97164 1.22396 0.97924 1.01430 0.95152 1.22880 0.92257 0.99029 0.95254 0.92199 0.92114 0.88777 0.88126 0.87454 0.90676 0.87236 0.85789 0.90051 0.91295 0.94528 0.90158 0.89603 0.93508 0.91101 0.90655 0.91657 0.91051 0.93855 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.74 10.57 -39.27 -0.41 -7.16 16 3 C 0.45 9.76 7.99 36.00 0.29 10.05 16 4 O -0.48 -11.94 16.08 -18.74 -0.30 -12.24 16 5 C 0.13 2.64 4.82 -5.20 -0.03 2.62 16 6 N -0.82 -19.02 1.91 -61.09 -0.12 -19.13 16 7 C -0.26 -6.56 9.31 -15.06 -0.14 -6.70 16 8 H 0.13 3.59 7.52 -52.49 -0.39 3.19 16 9 C 0.06 1.58 5.28 -17.43 -0.09 1.49 16 10 N -0.82 -21.10 13.97 55.49 0.78 -20.33 16 11 Si 0.86 17.29 25.22 -169.99 -4.29 13.01 16 12 H -0.26 -5.00 6.66 56.52 0.38 -4.62 16 13 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 14 H -0.25 -4.64 7.11 56.52 0.40 -4.24 16 15 S 2.50 55.77 5.32 -107.50 -0.57 55.20 16 16 O -0.99 -23.36 17.11 -57.54 -0.98 -24.34 16 17 O -0.96 -24.66 16.84 -57.54 -0.97 -25.62 16 18 C -0.66 -11.41 6.18 37.15 0.23 -11.18 16 19 C -0.10 -1.64 4.88 -26.73 -0.13 -1.77 16 20 C 0.05 0.74 5.03 -3.82 -0.02 0.72 16 21 N -0.52 -6.61 5.40 -230.45 -1.24 -7.85 16 22 C 0.03 0.32 5.10 -1.89 -0.01 0.31 16 23 C -0.12 -1.14 7.06 -24.87 -0.18 -1.32 16 24 C -0.13 -1.13 6.93 -25.38 -0.18 -1.30 16 25 C 0.03 0.35 6.69 -2.76 -0.02 0.33 16 26 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 27 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.10 1.97 3.29 -51.93 -0.17 1.80 16 30 H 0.11 1.79 7.70 -51.93 -0.40 1.39 16 31 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.11 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.04 6.79 -51.93 -0.35 0.69 16 36 H 0.04 0.47 7.81 -51.93 -0.41 0.07 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.02 7.67 -51.93 -0.40 0.62 16 39 H 0.05 0.54 8.00 -51.94 -0.42 0.12 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.44 7.57 -51.93 -0.39 0.04 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -32.14 375.46 -8.82 -40.96 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.16 Total: 7.03 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 0.80 Total: -5.17 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.58 Total: -47.32 kcal Atomic # 8 Polarization: -66.69 SS G_CDS: -2.67 Total: -69.36 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -4.29 Total: 13.01 kcal Atomic # 16 Polarization: 55.77 SS G_CDS: -0.57 Total: 55.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.14 -8.82 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601349457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.044 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds