Wall clock time and date at job start Tue Mar 31 2020 17:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34235 * 116.99506 * 2 1 4 4 O 1.20816 * 120.00224 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99633 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47347 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99669 * 275.00116 * 6 5 3 8 8 H 1.08001 * 120.00063 * 142.17806 * 7 6 5 9 9 C 1.38813 * 120.00286 * 322.17325 * 7 6 5 10 10 N 1.31609 * 120.00124 * 155.30058 * 9 7 6 11 11 Si 1.86806 * 119.99682 * 335.30311 * 9 7 6 12 12 H 1.48506 * 109.47061 * 95.64034 * 11 9 7 13 13 H 1.48502 * 109.46915 * 215.63750 * 11 9 7 14 14 H 1.48496 * 109.47144 * 335.63874 * 11 9 7 15 15 S 1.65591 * 120.00160 * 94.99663 * 6 5 3 16 16 O 1.42097 * 104.27918 * 330.68607 * 15 6 5 17 17 O 1.42098 * 104.27966 * 202.83190 * 15 6 5 18 18 C 1.81400 * 104.45203 * 86.76029 * 15 6 5 19 19 C 1.52992 * 109.47388 * 180.02562 * 18 15 6 20 20 C 1.53004 * 109.47434 * 179.97438 * 19 18 15 21 21 N 1.46898 * 109.47453 * 179.97438 * 20 19 18 22 22 C 1.48538 * 110.99466 * 52.60797 * 21 20 19 23 23 C 1.54943 * 103.22242 * 159.72239 * 22 21 20 24 24 C 1.54591 * 102.91936 * 322.58039 * 23 22 21 25 25 C 1.47895 * 110.99874 * 170.00093 * 21 20 19 26 26 H 1.08991 * 109.47070 * 299.99918 * 1 2 3 27 27 H 1.08999 * 109.46952 * 60.00008 * 1 2 3 28 28 H 1.09000 * 109.46865 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47379 * 59.99625 * 5 3 2 30 30 H 1.09004 * 109.46939 * 299.99920 * 5 3 2 31 31 H 0.96998 * 120.00034 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.46818 * 300.00234 * 18 15 6 33 33 H 1.08993 * 109.46883 * 59.99619 * 18 15 6 34 34 H 1.09003 * 109.47241 * 299.99863 * 19 18 15 35 35 H 1.09002 * 109.47683 * 59.99778 * 19 18 15 36 36 H 1.08993 * 109.46940 * 300.00326 * 20 19 18 37 37 H 1.09005 * 109.46295 * 59.99821 * 20 19 18 38 38 H 1.09004 * 110.66629 * 278.14952 * 22 21 20 39 39 H 1.08988 * 110.66848 * 41.28509 * 22 21 20 40 40 H 1.09006 * 110.71900 * 204.22651 * 23 22 21 41 41 H 1.08993 * 110.72892 * 80.94408 * 23 22 21 42 42 H 1.08999 * 110.31084 * 263.04349 * 24 23 22 43 43 H 1.09002 * 110.30424 * 140.87824 * 24 23 22 44 44 H 1.09004 * 109.91845 * 333.51002 * 25 21 20 45 45 H 1.09003 * 109.91761 * 94.60935 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.0761 3.3665 -1.1809 8 1 3.7780 4.4034 -1.2280 9 6 4.5552 2.7298 -2.3175 10 7 4.2151 3.1691 -3.5106 11 14 5.6826 1.2493 -2.1536 12 1 4.8795 0.0033 -2.2420 13 1 6.6875 1.2690 -3.2468 14 1 6.3770 1.2987 -0.8419 15 16 4.3368 3.4375 1.4291 16 8 3.5235 2.7759 2.3882 17 8 4.1599 4.8189 1.1468 18 6 6.0891 3.0657 1.7154 19 6 6.5419 3.7183 3.0229 20 6 8.0197 3.4042 3.2647 21 7 8.4548 4.0313 4.5198 22 6 7.5539 3.6594 5.6408 23 6 8.4173 3.9384 6.8968 24 6 9.8307 3.5012 6.4487 25 6 9.8005 3.5582 4.9101 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9557 0.7810 -0.8908 30 1 3.9563 0.7807 0.8892 31 1 4.5502 2.7244 -4.3049 32 1 6.2251 1.9863 1.7823 33 1 6.6830 3.4562 0.8891 34 1 6.4058 4.7978 2.9564 35 1 5.9479 3.3275 3.8490 36 1 8.1555 2.3248 3.3313 37 1 8.6140 3.7948 2.4386 38 1 6.6613 4.2851 5.6408 39 1 7.2856 2.6045 5.5849 40 1 8.0768 3.3373 7.7400 41 1 8.4028 4.9991 7.1470 42 1 10.0372 2.4854 6.7856 43 1 10.5808 4.1896 6.8381 44 1 9.9789 2.5649 4.4981 45 1 10.5581 4.2524 4.5463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601349457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:06 Heat of formation + Delta-G solvation = -161.215093 kcal Electronic energy + Delta-G solvation = -28039.267335 eV Core-core repulsion = 23990.859557 eV Total energy + Delta-G solvation = -4048.407777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.41069 -39.96377 -38.10485 -37.92830 -36.94581 -36.74421 -35.66072 -34.03168 -31.91250 -30.24875 -29.80783 -27.91170 -26.84069 -26.00824 -23.45802 -22.48529 -21.72468 -21.36739 -20.22210 -19.30465 -18.87889 -18.67524 -17.60632 -17.42533 -17.20519 -17.12868 -16.95905 -16.59939 -16.34665 -15.86681 -15.10108 -14.92765 -14.75309 -14.60286 -14.38990 -14.17447 -14.11612 -13.72647 -13.58706 -13.21467 -13.03696 -13.00632 -12.95555 -12.92346 -12.65850 -12.60424 -12.48797 -12.26756 -12.24928 -12.04896 -11.86568 -11.76852 -11.76129 -11.69354 -11.42693 -11.30610 -10.90417 -10.13423 -9.40137 -8.53021 -6.15590 -0.54801 1.23434 1.28492 1.40809 1.53283 1.66933 2.03426 2.22743 2.74620 2.94239 3.19754 3.35214 3.67174 3.75554 3.80867 3.84865 3.90499 3.94491 4.07394 4.10578 4.16879 4.32803 4.34094 4.35185 4.37494 4.50031 4.64379 4.66523 4.70931 4.72643 4.86724 4.91748 4.96343 4.98308 5.03676 5.07567 5.20372 5.32044 5.37360 5.56085 5.93334 6.04258 6.20853 6.82062 6.90613 7.00696 8.60640 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.014384 B = 0.003602 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.102073 B = 7772.654113 C = 8648.704133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.443 3.557 4 O -0.526 6.526 5 C 0.112 3.888 6 N -0.843 5.843 7 C -0.304 4.304 8 H 0.059 0.941 9 C 0.022 3.978 10 N -0.887 5.887 11 Si 0.913 3.087 12 H -0.242 1.242 13 H -0.280 1.280 14 H -0.211 1.211 15 S 2.545 3.455 16 O -1.002 7.002 17 O -1.001 7.001 18 C -0.624 4.624 19 C -0.112 4.112 20 C 0.059 3.941 21 N -0.538 5.538 22 C 0.019 3.981 23 C -0.122 4.122 24 C -0.127 4.127 25 C 0.030 3.970 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.143 0.857 29 H 0.114 0.886 30 H 0.153 0.847 31 H 0.284 0.716 32 H 0.154 0.846 33 H 0.141 0.859 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.050 0.950 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.336 -10.281 14.630 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.284 3.716 4 O -0.414 6.414 5 C -0.016 4.016 6 N -0.668 5.668 7 C -0.442 4.442 8 H 0.077 0.923 9 C -0.186 4.186 10 N -0.524 5.524 11 Si 0.733 3.267 12 H -0.168 1.168 13 H -0.206 1.206 14 H -0.133 1.133 15 S 2.650 3.350 16 O -0.992 6.992 17 O -0.991 6.991 18 C -0.754 4.754 19 C -0.151 4.151 20 C -0.070 4.070 21 N -0.263 5.263 22 C -0.109 4.109 23 C -0.160 4.160 24 C -0.165 4.165 25 C -0.097 4.097 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.161 0.839 29 H 0.131 0.869 30 H 0.170 0.830 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.493 -8.892 14.998 19.852 hybrid contribution 0.169 -0.893 -0.927 1.298 sum 9.662 -9.785 14.071 19.674 Atomic orbital electron populations 1.23535 0.75339 1.05815 1.01983 1.86474 1.24775 1.32453 1.84264 1.24945 0.93553 0.81510 0.71603 1.90623 1.67431 1.37921 1.45403 1.21441 0.87053 0.85846 1.07227 1.52911 1.73444 1.18751 1.21722 1.18525 1.42514 0.97492 0.85685 0.92270 1.26422 0.96635 1.01897 0.93665 1.70000 1.39923 1.43249 0.99186 0.86337 0.79866 0.78736 0.81770 1.16772 1.20572 1.13279 1.08448 0.79508 0.74199 0.72871 1.93417 1.67538 1.75922 1.62336 1.93422 1.86817 1.35062 1.83843 1.30645 1.25833 1.12197 1.06735 1.21376 0.98463 1.01084 0.94179 1.22236 0.93889 0.97717 0.93177 1.64803 1.03165 1.55748 1.02566 1.23403 0.96944 0.99450 0.91067 1.22496 0.94583 1.02246 0.96674 1.22404 0.97683 1.02496 0.93919 1.22965 0.90921 0.99352 0.96493 0.92439 0.92957 0.83911 0.86877 0.82965 0.90586 0.82759 0.84082 0.91114 0.90341 0.92836 0.89837 0.90714 0.93103 0.89601 0.90972 0.90383 0.90076 0.93161 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.67 10.57 -51.46 -0.54 -13.22 16 3 C 0.44 19.21 7.99 71.23 0.57 19.78 16 4 O -0.53 -27.52 16.08 21.99 0.35 -27.17 16 5 C 0.11 4.39 4.82 85.63 0.41 4.81 16 6 N -0.84 -39.03 1.91 -347.17 -0.66 -39.69 16 7 C -0.30 -16.59 9.31 84.03 0.78 -15.80 16 8 H 0.06 3.83 7.52 -2.91 -0.02 3.81 16 9 C 0.02 1.14 5.28 84.86 0.45 1.59 16 10 N -0.89 -49.51 13.97 21.65 0.30 -49.20 16 11 Si 0.91 34.34 25.22 68.60 1.73 36.07 16 12 H -0.24 -8.23 6.66 99.48 0.66 -7.56 16 13 H -0.28 -10.57 7.11 99.48 0.71 -9.87 16 14 H -0.21 -6.45 7.11 99.48 0.71 -5.74 16 15 S 2.55 110.38 5.32 -56.49 -0.30 110.08 16 16 O -1.00 -45.12 17.11 -127.65 -2.18 -47.30 16 17 O -1.00 -53.16 16.84 -127.65 -2.15 -55.31 16 18 C -0.62 -18.67 6.18 71.98 0.44 -18.23 16 19 C -0.11 -3.08 4.88 30.59 0.15 -2.93 16 20 C 0.06 1.33 5.03 86.30 0.43 1.77 16 21 N -0.54 -11.80 5.40 -883.00 -4.76 -16.57 16 22 C 0.02 0.38 5.10 86.65 0.44 0.82 16 23 C -0.12 -1.85 7.06 31.80 0.22 -1.62 16 24 C -0.13 -1.70 6.93 31.47 0.22 -1.48 16 25 C 0.03 0.51 6.69 86.45 0.58 1.09 16 26 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 27 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 28 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.11 4.16 3.29 -2.39 -0.01 4.15 16 30 H 0.15 4.39 7.70 -2.39 -0.02 4.38 16 31 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.15 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.14 4.08 8.14 -2.39 -0.02 4.06 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 2.05 6.79 -2.39 -0.02 2.03 16 36 H 0.05 1.05 7.81 -2.39 -0.02 1.03 16 37 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.07 1.61 7.67 -2.39 -0.02 1.60 16 39 H 0.05 0.96 8.00 -2.39 -0.02 0.94 16 40 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 0.79 7.57 -2.38 -0.02 0.77 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -77.84 375.46 -1.38 -79.22 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.93 Total: 31.38 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.90 Total: -8.29 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -5.12 Total: -105.46 kcal Atomic # 8 Polarization: -138.47 SS G_CDS: -4.52 Total: -142.99 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 1.73 Total: 36.07 kcal Atomic # 16 Polarization: 110.38 SS G_CDS: -0.30 Total: 110.08 kcal Total: -77.84 -1.38 -79.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601349457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.995 kcal (2) G-P(sol) polarization free energy of solvation -77.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds