Wall clock time and date at job start Tue Mar 31 2020 17:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00175 * 2 1 4 4 C 1.53002 * 109.47157 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47271 * 67.04949 * 4 3 2 6 6 C 1.46893 * 111.00715 * 290.00695 * 5 4 3 7 7 C 1.50705 * 109.47038 * 299.68958 * 6 5 4 8 8 H 1.08002 * 119.99625 * 354.88051 * 7 6 5 9 9 C 1.37877 * 119.99986 * 174.87954 * 7 6 5 10 10 N 1.31506 * 120.00384 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99772 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46964 * 60.00039 * 11 9 7 13 13 H 1.48495 * 109.47130 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47037 * 300.00310 * 11 9 7 15 15 C 1.46906 * 111.00030 * 53.96124 * 5 4 3 16 16 C 1.50701 * 109.46760 * 66.03855 * 15 5 4 17 17 N 1.30105 * 124.95638 * 275.26847 * 16 15 5 18 18 C 1.35781 * 109.64511 * 180.15075 * 17 16 15 19 19 C 1.39746 * 133.59757 * 179.91564 * 18 17 16 20 20 C 1.36600 * 119.88462 * 179.70882 * 19 18 17 21 21 C 1.38783 * 120.66808 * 359.95544 * 20 19 18 22 22 N 1.48021 * 119.76976 * 180.02562 * 21 20 19 23 23 O 1.21799 * 119.99502 * 180.02562 * 22 21 20 24 24 O 1.21800 * 120.00280 * 0.02562 * 22 21 20 25 25 C 1.37845 * 120.45375 * 0.04569 * 21 20 19 26 26 C 1.38841 * 119.68918 * 359.97438 * 25 21 20 27 27 N 1.36044 * 124.94746 * 95.00882 * 16 15 5 28 28 H 0.96994 * 126.34696 * 359.97343 * 27 16 15 29 29 H 1.08994 * 109.47352 * 300.01079 * 1 2 3 30 30 H 1.09003 * 109.46805 * 60.00061 * 1 2 3 31 31 H 1.08999 * 109.47190 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47532 * 59.99529 * 3 2 1 33 33 H 1.09005 * 109.46951 * 299.99706 * 3 2 1 34 34 H 1.09001 * 109.46631 * 307.05303 * 4 3 2 35 35 H 1.08998 * 109.46846 * 187.05823 * 4 3 2 36 36 H 1.09001 * 109.47298 * 59.68621 * 6 5 4 37 37 H 1.09004 * 109.47807 * 179.68956 * 6 5 4 38 38 H 0.96997 * 120.00546 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.46741 * 306.04576 * 15 5 4 40 40 H 1.08993 * 109.47493 * 186.03907 * 15 5 4 41 41 H 1.07996 * 120.05810 * 359.66272 * 19 18 17 42 42 H 1.08005 * 119.66483 * 179.97438 * 20 19 18 43 43 H 1.07996 * 120.15901 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9815 0.6073 -1.2743 6 6 3.6018 -0.8082 -1.3730 7 6 4.2442 -1.5801 -0.2493 8 1 4.9369 -1.0877 0.4171 9 6 3.9477 -2.9149 -0.0721 10 7 3.1038 -3.5144 -0.8832 11 14 4.7446 -3.8718 1.3203 12 1 4.3839 -3.2487 2.6190 13 1 4.2628 -5.2762 1.2950 14 1 6.2201 -3.8511 1.1542 15 6 3.4557 1.3739 -2.4119 16 6 4.0620 2.7535 -2.4111 17 7 3.6144 3.7641 -1.7248 18 6 4.3907 4.8536 -1.9574 19 6 4.3645 6.1720 -1.4948 20 6 5.3115 7.0608 -1.9183 21 6 6.3041 6.6685 -2.8054 22 7 7.3206 7.6480 -3.2508 23 8 8.1933 7.3083 -4.0296 24 8 7.2844 8.7935 -2.8385 25 6 6.3495 5.3733 -3.2748 26 6 5.3951 4.4561 -2.8558 27 7 5.1603 3.1225 -3.1242 28 1 5.6819 2.5538 -3.7118 29 1 -0.3634 0.5140 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8484 0.5387 0.8211 35 1 3.9781 2.1726 0.1269 36 1 2.5178 -0.8994 -1.3031 37 1 3.9392 -1.2093 -2.3287 38 1 2.8949 -4.4533 -0.7584 39 1 2.3719 1.4533 -2.3265 40 1 3.7107 0.8655 -3.3417 41 1 3.5965 6.4879 -0.8043 42 1 5.2876 8.0790 -1.5589 43 1 7.1238 5.0733 -3.9654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614261514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:10 Heat of formation + Delta-G solvation = 44.324629 kcal Electronic energy + Delta-G solvation = -28511.778604 eV Core-core repulsion = 24369.132497 eV Total energy + Delta-G solvation = -4142.646106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.77929 -42.12997 -38.53649 -37.71367 -36.70199 -35.84879 -33.68510 -32.65802 -31.03848 -30.80026 -29.18629 -28.26454 -26.23475 -25.86738 -24.79061 -23.15703 -22.75396 -22.29327 -21.36384 -19.80156 -19.65715 -18.78643 -17.84297 -17.67004 -17.13932 -16.39999 -16.19243 -15.92196 -15.69624 -15.26496 -14.77008 -14.62685 -14.45221 -14.13060 -14.04978 -13.56949 -13.38373 -12.47782 -12.35351 -12.21248 -12.03683 -11.71467 -11.66863 -11.55822 -11.37374 -11.30018 -11.28557 -11.13879 -11.10747 -10.78407 -10.71315 -10.42902 -10.19797 -9.96237 -9.26462 -9.06760 -8.99064 -8.82568 -8.40911 -7.38485 -6.00652 -3.99213 -0.42990 0.65665 1.13054 1.19097 2.29509 2.51419 3.20563 3.32967 3.37044 3.39901 3.68332 4.03231 4.31192 4.34489 4.44084 4.49147 4.61529 4.72242 4.89824 4.96097 5.26185 5.36175 5.37248 5.47541 5.48626 5.61000 5.66191 5.73061 5.77724 5.79971 5.88873 5.99298 6.06954 6.10036 6.18737 6.27719 6.68843 6.88994 7.09992 7.46000 7.50199 7.53320 7.70334 7.79478 7.90231 8.12843 8.46047 9.04461 9.62471 11.10579 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.002627 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.943568 B =10656.201374 C =11464.978147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.028 3.972 4 C 0.063 3.937 5 N -0.527 5.527 6 C 0.183 3.817 7 C -0.498 4.498 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.892 3.108 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.279 1.279 15 C 0.107 3.893 16 C 0.353 3.647 17 N -0.494 5.494 18 C 0.103 3.897 19 C -0.062 4.062 20 C -0.077 4.077 21 C -0.043 4.043 22 N 0.037 4.963 23 O -0.171 6.171 24 O -0.162 6.162 25 C -0.023 4.023 26 C 0.031 3.969 27 N -0.580 5.580 28 H 0.432 0.568 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.019 0.981 38 H 0.259 0.741 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 16.364 -4.274 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C -0.051 4.051 4 C -0.066 4.066 5 N -0.252 5.252 6 C 0.060 3.940 7 C -0.537 4.537 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.535 5.535 11 Si 0.721 3.279 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.205 1.205 15 C -0.023 4.023 16 C 0.086 3.914 17 N -0.215 5.215 18 C -0.019 4.019 19 C -0.082 4.082 20 C -0.100 4.100 21 C -0.128 4.128 22 N 0.554 4.446 23 O -0.385 6.385 24 O -0.377 6.377 25 C -0.044 4.044 26 C -0.081 4.081 27 N -0.190 5.190 28 H 0.273 0.727 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.170 0.830 42 H 0.173 0.827 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -1.459 15.543 -3.581 16.017 hybrid contribution 0.578 -0.461 -0.173 0.759 sum -0.881 15.082 -3.754 15.567 Atomic orbital electron populations 1.22668 0.83527 1.02221 0.98420 1.88438 1.17499 1.25997 1.94673 1.23242 0.96807 0.85637 0.99373 1.22224 0.90180 0.99739 0.94436 1.62486 1.57954 1.05744 0.99017 1.20107 0.97845 0.78844 0.97231 1.20917 1.25246 0.94246 1.13275 0.92451 1.24845 0.95220 0.97635 0.96241 1.69923 1.34561 1.11255 1.37739 0.86661 0.79550 0.78882 0.82841 1.20375 1.21485 1.20452 1.20881 0.98075 0.84539 0.98770 1.24289 0.83631 0.97003 0.86473 1.70698 1.28809 0.97586 1.24399 1.19493 0.92384 0.94539 0.95500 1.19921 0.99041 0.89060 1.00162 1.20344 0.92278 1.01759 0.95569 1.20465 0.95600 0.89490 1.07280 1.43472 1.00732 1.01555 0.98795 1.94537 1.29553 1.84171 1.30199 1.94528 1.80211 1.03879 1.59119 1.19550 0.97215 0.89346 0.98310 1.18354 1.00199 0.86112 1.03398 1.43190 1.26575 1.08410 1.40797 0.72727 0.95253 0.95260 0.89987 0.94317 0.93499 0.88446 0.91090 0.93836 0.96276 0.93104 0.90505 0.88703 0.83033 0.82652 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.35 -6.83 7.58 -35.23 -0.27 -7.10 16 3 C 0.03 0.46 5.69 37.16 0.21 0.68 16 4 C 0.06 1.13 5.38 -3.83 -0.02 1.11 16 5 N -0.53 -9.81 4.74 -237.52 -1.13 -10.94 16 6 C 0.18 4.26 4.29 -4.98 -0.02 4.24 16 7 C -0.50 -13.07 8.21 -34.44 -0.28 -13.35 16 8 H 0.06 1.51 6.99 -52.49 -0.37 1.15 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -25.31 13.29 55.43 0.74 -24.58 16 11 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.11 1.56 5.23 -4.97 -0.03 1.54 16 16 C 0.35 4.63 6.87 -154.82 -1.06 3.57 16 17 N -0.49 -6.78 10.33 -8.23 -0.09 -6.86 16 18 C 0.10 1.26 7.23 -84.70 -0.61 0.65 16 19 C -0.06 -0.60 10.05 -39.61 -0.40 -1.00 16 20 C -0.08 -0.73 9.47 -39.97 -0.38 -1.11 16 21 C -0.04 -0.47 6.85 -79.89 -0.55 -1.02 16 22 N 0.04 0.46 4.45 33.99 0.15 0.61 16 23 O -0.17 -2.27 18.43 -29.46 -0.54 -2.82 16 24 O -0.16 -2.09 18.42 -29.46 -0.54 -2.64 16 25 C -0.02 -0.23 9.57 -39.50 -0.38 -0.61 16 26 C 0.03 0.35 7.31 -83.99 -0.61 -0.27 16 27 N -0.58 -6.26 6.23 -8.00 -0.05 -6.31 16 28 H 0.43 3.50 8.96 -40.82 -0.37 3.13 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.74 5.80 -51.93 -0.30 0.44 16 34 H 0.10 2.02 6.33 -51.93 -0.33 1.69 16 35 H 0.07 1.20 6.84 -51.93 -0.36 0.84 16 36 H 0.04 1.10 5.29 -51.93 -0.27 0.82 16 37 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.08 1.14 5.71 -51.93 -0.30 0.84 16 40 H 0.09 1.23 8.01 -51.93 -0.42 0.81 16 41 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.16 1.16 7.58 -52.48 -0.40 0.76 16 43 H 0.15 1.31 7.59 -52.49 -0.40 0.91 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -30.75 363.04 -9.56 -40.31 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.17 Total: 1.19 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -3.12 Total: -2.43 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.37 Total: -48.07 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.35 Total: -12.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.75 -9.56 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614261514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.636 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds