Wall clock time and date at job start Tue Mar 31 2020 17:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00175 * 2 1 4 4 C 1.53002 * 109.47157 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47271 * 67.04949 * 4 3 2 6 6 C 1.46893 * 111.00715 * 290.00695 * 5 4 3 7 7 C 1.50705 * 109.47038 * 299.68958 * 6 5 4 8 8 H 1.08002 * 119.99625 * 354.88051 * 7 6 5 9 9 C 1.37877 * 119.99986 * 174.87954 * 7 6 5 10 10 N 1.31506 * 120.00384 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99772 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46964 * 60.00039 * 11 9 7 13 13 H 1.48495 * 109.47130 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47037 * 300.00310 * 11 9 7 15 15 C 1.46906 * 111.00030 * 53.96124 * 5 4 3 16 16 C 1.50701 * 109.46760 * 66.03855 * 15 5 4 17 17 N 1.30105 * 124.95638 * 275.26847 * 16 15 5 18 18 C 1.35781 * 109.64511 * 180.15075 * 17 16 15 19 19 C 1.39746 * 133.59757 * 179.91564 * 18 17 16 20 20 C 1.36600 * 119.88462 * 179.70882 * 19 18 17 21 21 C 1.38783 * 120.66808 * 359.95544 * 20 19 18 22 22 N 1.48021 * 119.76976 * 180.02562 * 21 20 19 23 23 O 1.21799 * 119.99502 * 180.02562 * 22 21 20 24 24 O 1.21800 * 120.00280 * 0.02562 * 22 21 20 25 25 C 1.37845 * 120.45375 * 0.04569 * 21 20 19 26 26 C 1.38841 * 119.68918 * 359.97438 * 25 21 20 27 27 N 1.36044 * 124.94746 * 95.00882 * 16 15 5 28 28 H 0.96994 * 126.34696 * 359.97343 * 27 16 15 29 29 H 1.08994 * 109.47352 * 300.01079 * 1 2 3 30 30 H 1.09003 * 109.46805 * 60.00061 * 1 2 3 31 31 H 1.08999 * 109.47190 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47532 * 59.99529 * 3 2 1 33 33 H 1.09005 * 109.46951 * 299.99706 * 3 2 1 34 34 H 1.09001 * 109.46631 * 307.05303 * 4 3 2 35 35 H 1.08998 * 109.46846 * 187.05823 * 4 3 2 36 36 H 1.09001 * 109.47298 * 59.68621 * 6 5 4 37 37 H 1.09004 * 109.47807 * 179.68956 * 6 5 4 38 38 H 0.96997 * 120.00546 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.46741 * 306.04576 * 15 5 4 40 40 H 1.08993 * 109.47493 * 186.03907 * 15 5 4 41 41 H 1.07996 * 120.05810 * 359.66272 * 19 18 17 42 42 H 1.08005 * 119.66483 * 179.97438 * 20 19 18 43 43 H 1.07996 * 120.15901 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9815 0.6073 -1.2743 6 6 3.6018 -0.8082 -1.3730 7 6 4.2442 -1.5801 -0.2493 8 1 4.9369 -1.0877 0.4171 9 6 3.9477 -2.9149 -0.0721 10 7 3.1038 -3.5144 -0.8832 11 14 4.7446 -3.8718 1.3203 12 1 4.3839 -3.2487 2.6190 13 1 4.2628 -5.2762 1.2950 14 1 6.2201 -3.8511 1.1542 15 6 3.4557 1.3739 -2.4119 16 6 4.0620 2.7535 -2.4111 17 7 3.6144 3.7641 -1.7248 18 6 4.3907 4.8536 -1.9574 19 6 4.3645 6.1720 -1.4948 20 6 5.3115 7.0608 -1.9183 21 6 6.3041 6.6685 -2.8054 22 7 7.3206 7.6480 -3.2508 23 8 8.1933 7.3083 -4.0296 24 8 7.2844 8.7935 -2.8385 25 6 6.3495 5.3733 -3.2748 26 6 5.3951 4.4561 -2.8558 27 7 5.1603 3.1225 -3.1242 28 1 5.6819 2.5538 -3.7118 29 1 -0.3634 0.5140 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 3.8484 0.5387 0.8211 35 1 3.9781 2.1726 0.1269 36 1 2.5178 -0.8994 -1.3031 37 1 3.9392 -1.2093 -2.3287 38 1 2.8949 -4.4533 -0.7584 39 1 2.3719 1.4533 -2.3265 40 1 3.7107 0.8655 -3.3417 41 1 3.5965 6.4879 -0.8043 42 1 5.2876 8.0790 -1.5589 43 1 7.1238 5.0733 -3.9654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614261514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:09 Heat of formation + Delta-G solvation = 24.754752 kcal Electronic energy + Delta-G solvation = -28512.627217 eV Core-core repulsion = 24369.132497 eV Total energy + Delta-G solvation = -4143.494720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.68584 -43.07696 -39.84106 -38.69797 -37.67351 -37.26385 -34.66576 -34.53353 -32.08165 -31.67010 -30.60276 -29.67140 -27.56339 -27.06109 -26.16652 -24.38235 -23.96060 -23.27602 -22.51142 -21.15416 -20.56077 -19.74971 -18.77108 -18.60921 -18.42196 -17.91863 -17.52980 -17.29345 -16.85587 -16.48414 -16.12963 -15.84058 -15.49102 -15.45653 -15.24626 -14.69382 -14.53817 -13.97535 -13.60945 -13.35398 -13.14660 -13.08433 -12.92279 -12.84766 -12.69886 -12.61929 -12.50507 -12.40682 -12.33999 -12.28774 -12.13669 -11.86854 -11.69878 -11.34979 -11.18734 -10.55459 -10.30015 -9.89762 -9.69283 -8.92161 -8.06834 -6.10119 -1.35661 -0.16405 0.21798 0.28907 1.32920 1.44215 1.45012 1.51903 1.63119 2.35112 2.47716 2.75564 3.04776 3.19425 3.28916 3.47381 3.53315 3.62534 3.80647 3.82926 4.12612 4.19443 4.23415 4.37997 4.44406 4.56838 4.58113 4.59566 4.65736 4.68553 4.78617 4.88242 4.89702 5.00888 5.13417 5.19866 5.39924 5.40810 5.71302 5.72998 6.06004 6.14523 6.29019 6.48720 6.50131 6.52959 6.64692 7.03034 7.54817 9.03802 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018155 B = 0.002627 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.943568 B =10656.201374 C =11464.978147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.389 6.389 3 C 0.034 3.966 4 C 0.069 3.931 5 N -0.533 5.533 6 C 0.199 3.801 7 C -0.504 4.504 8 H 0.050 0.950 9 C 0.013 3.987 10 N -0.926 5.926 11 Si 0.949 3.051 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.113 3.887 16 C 0.343 3.657 17 N -0.507 5.507 18 C 0.082 3.918 19 C -0.055 4.055 20 C -0.070 4.070 21 C -0.049 4.049 22 N 0.037 4.963 23 O -0.191 6.191 24 O -0.165 6.165 25 C -0.018 4.018 26 C 0.029 3.971 27 N -0.569 5.569 28 H 0.443 0.557 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.028 0.972 37 H -0.001 1.001 38 H 0.258 0.742 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.175 0.825 42 H 0.177 0.823 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 18.017 -3.952 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.308 6.308 3 C -0.044 4.044 4 C -0.059 4.059 5 N -0.257 5.257 6 C 0.074 3.926 7 C -0.542 4.542 8 H 0.069 0.931 9 C -0.185 4.185 10 N -0.567 5.567 11 Si 0.775 3.225 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.016 4.016 16 C 0.075 3.925 17 N -0.228 5.228 18 C -0.040 4.040 19 C -0.075 4.075 20 C -0.092 4.092 21 C -0.134 4.134 22 N 0.552 4.448 23 O -0.401 6.401 24 O -0.382 6.382 25 C -0.039 4.039 26 C -0.083 4.083 27 N -0.179 5.179 28 H 0.286 0.714 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.192 0.808 42 H 0.195 0.805 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.387 17.208 -3.285 17.574 hybrid contribution 0.554 -0.841 -0.282 1.046 sum -0.832 16.367 -3.567 16.772 Atomic orbital electron populations 1.22776 0.81675 1.02317 1.00238 1.88357 1.19733 1.27696 1.94990 1.23210 0.95638 0.84912 1.00646 1.22095 0.91424 0.99341 0.93040 1.62257 1.58669 1.04074 1.00707 1.19694 0.96426 0.81402 0.95057 1.21233 1.24707 0.94646 1.13655 0.93143 1.25554 0.95888 0.98720 0.98370 1.70032 1.35979 1.11376 1.39302 0.85760 0.78857 0.77568 0.80270 1.20110 1.21296 1.19878 1.20770 0.98113 0.85131 0.97607 1.23761 0.84673 0.96276 0.87747 1.70613 1.29460 0.98146 1.24631 1.19852 0.92662 0.95167 0.96329 1.20178 0.99364 0.87995 0.99961 1.20590 0.91292 1.02694 0.94612 1.20644 0.95550 0.89376 1.07812 1.43680 1.00845 1.01705 0.98544 1.94537 1.30350 1.84263 1.30936 1.94515 1.80267 1.04358 1.59016 1.19658 0.97166 0.88962 0.98152 1.18410 1.00296 0.86166 1.03429 1.43077 1.25928 1.08540 1.40401 0.71398 0.93235 0.93511 0.90850 0.92814 0.92200 0.91636 0.89706 0.95413 0.98272 0.93269 0.90540 0.87384 0.80768 0.80530 0.81546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.39 -15.24 7.58 -148.98 -1.13 -16.37 16 3 C 0.03 1.10 5.69 71.98 0.41 1.51 16 4 C 0.07 2.48 5.38 86.31 0.46 2.95 16 5 N -0.53 -19.79 4.74 -905.37 -4.29 -24.08 16 6 C 0.20 9.44 4.29 85.56 0.37 9.81 16 7 C -0.50 -26.86 8.21 25.60 0.21 -26.65 16 8 H 0.05 2.70 6.99 -2.91 -0.02 2.68 16 9 C 0.01 0.70 5.46 84.66 0.46 1.16 16 10 N -0.93 -53.25 13.29 21.45 0.28 -52.97 16 11 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 13 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 15 C 0.11 3.21 5.23 85.56 0.45 3.66 16 16 C 0.34 8.50 6.87 137.92 0.95 9.45 16 17 N -0.51 -12.96 10.33 -179.96 -1.86 -14.82 16 18 C 0.08 1.82 7.23 39.45 0.29 2.11 16 19 C -0.06 -0.92 10.05 22.25 0.22 -0.69 16 20 C -0.07 -1.11 9.47 22.02 0.21 -0.90 16 21 C -0.05 -0.95 6.85 36.41 0.25 -0.70 16 22 N 0.04 0.88 4.45 -46.37 -0.21 0.67 16 23 O -0.19 -4.86 18.43 18.89 0.35 -4.51 16 24 O -0.17 -3.99 18.42 18.89 0.35 -3.64 16 25 C -0.02 -0.33 9.57 22.32 0.21 -0.12 16 26 C 0.03 0.59 7.31 38.86 0.28 0.87 16 27 N -0.57 -11.33 6.23 -179.23 -1.12 -12.45 16 28 H 0.44 6.48 8.96 -92.71 -0.83 5.65 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.79 5.80 -2.38 -0.01 1.78 16 34 H 0.07 2.75 6.33 -2.39 -0.02 2.74 16 35 H 0.08 2.78 6.84 -2.39 -0.02 2.76 16 36 H 0.03 1.44 5.29 -2.39 -0.01 1.43 16 37 H 0.00 -0.04 8.05 -2.38 -0.02 -0.06 16 38 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 39 H 0.08 2.20 5.71 -2.38 -0.01 2.18 16 40 H 0.11 2.73 8.01 -2.39 -0.02 2.71 16 41 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 42 H 0.18 2.04 7.58 -2.91 -0.02 2.02 16 43 H 0.17 2.53 7.59 -2.91 -0.02 2.51 16 Total: -1.00 -66.09 363.04 0.67 -65.42 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.24 Total: 12.60 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 6.02 Total: 4.49 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -7.19 Total: -103.65 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.43 Total: -24.52 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -66.09 0.67 -65.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614261514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.176 kcal (2) G-P(sol) polarization free energy of solvation -66.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds